Wall clock time and date at job start Mon Mar 30 2020 07:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99906 * 2 1 4 4 C 1.52990 * 109.47606 * 66.04529 * 3 2 1 5 5 O 1.42904 * 109.47140 * 64.99805 * 4 3 2 6 6 C 1.42893 * 114.00380 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47421 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00094 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99938 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99925 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00334 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46831 * 90.00141 * 11 9 7 13 13 H 1.48497 * 109.47440 * 210.00157 * 11 9 7 14 14 H 1.48501 * 109.47189 * 330.00530 * 11 9 7 15 15 C 1.46895 * 110.99962 * 236.04256 * 2 1 3 16 16 H 1.09010 * 110.51705 * 66.05428 * 15 2 1 17 17 C 1.54847 * 110.46679 * 303.49091 * 15 2 1 18 18 C 1.56746 * 102.80837 * 202.95666 * 17 15 2 19 19 C 1.54179 * 103.40455 * 38.31907 * 18 17 15 20 20 H 1.08999 * 111.46102 * 98.24172 * 19 18 17 21 21 C 1.54344 * 108.84414 * 221.57511 * 19 18 17 22 22 C 1.55065 * 103.91614 * 139.88452 * 21 19 18 23 23 C 1.55058 * 102.11170 * 319.97733 * 22 21 19 24 24 C 1.54185 * 110.46651 * 188.60729 * 15 2 1 25 25 H 1.08995 * 111.45857 * 20.62420 * 24 15 2 26 26 H 1.08995 * 109.47051 * 178.38797 * 1 2 3 27 27 H 1.09005 * 109.46974 * 298.38796 * 1 2 3 28 28 H 1.09000 * 109.46938 * 58.38353 * 1 2 3 29 29 H 1.09001 * 109.47052 * 186.05136 * 3 2 1 30 30 H 1.08998 * 109.46770 * 306.03898 * 3 2 1 31 31 H 1.08997 * 109.47674 * 184.99893 * 4 3 2 32 32 H 1.09005 * 109.47415 * 305.00264 * 4 3 2 33 33 H 1.09005 * 109.47259 * 300.00390 * 6 5 4 34 34 H 1.09004 * 109.47274 * 59.99786 * 6 5 4 35 35 H 0.96998 * 120.00199 * 180.02562 * 10 9 7 36 36 H 1.08996 * 110.75956 * 321.46082 * 17 15 2 37 37 H 1.09001 * 110.75773 * 84.65708 * 17 15 2 38 38 H 1.08997 * 111.37294 * 279.68094 * 18 17 15 39 39 H 1.08998 * 110.41246 * 156.49872 * 18 17 15 40 40 H 1.08995 * 110.54124 * 21.27836 * 21 19 18 41 41 H 1.09005 * 110.53850 * 258.49301 * 21 19 18 42 42 H 1.09002 * 110.90454 * 78.18110 * 22 21 19 43 43 H 1.09000 * 110.89990 * 201.76661 * 22 21 19 44 44 H 1.09004 * 110.53490 * 158.63203 * 23 22 21 45 45 H 1.09002 * 110.53415 * 281.41235 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0576 1.3181 5 8 2.2956 1.3977 2.3978 6 6 2.0215 1.9629 3.6812 7 6 2.7697 1.1937 4.7392 8 1 3.3927 0.3571 4.4595 9 6 2.6590 1.5580 6.0644 10 7 3.3124 0.8869 6.9876 11 14 1.5820 3.0054 6.5483 12 1 0.2032 2.5267 6.8222 13 1 2.1344 3.6476 7.7680 14 1 1.5520 3.9927 5.4394 15 6 1.9954 -0.7660 -1.1375 16 1 1.7455 -0.2743 -2.0777 17 6 1.4421 -2.2121 -1.1189 18 6 2.5081 -3.0028 -1.9528 19 6 3.8439 -2.3646 -1.5221 20 1 4.3429 -2.9610 -0.7584 21 6 4.7352 -2.1841 -2.7693 22 6 5.4012 -0.8004 -2.5546 23 6 4.2333 0.0357 -1.9704 24 6 3.5220 -0.9406 -1.0097 25 1 3.8546 -0.8011 0.0189 26 1 -0.3633 -1.0272 -0.0289 27 1 -0.3633 0.4886 0.9041 28 1 -0.3633 0.5387 -0.8751 29 1 3.0797 1.3445 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 1.9439 3.1012 1.2830 32 1 0.5532 2.0059 1.4691 33 1 2.3416 3.0048 3.6954 34 1 0.9512 1.9091 3.8809 35 1 3.2342 1.1429 7.9199 36 1 1.3872 -2.5917 -0.0987 37 1 0.4650 -2.2581 -1.5998 38 1 2.3512 -2.8726 -3.0235 39 1 2.4886 -4.0604 -1.6896 40 1 4.1291 -2.1803 -3.6751 41 1 5.4903 -2.9688 -2.8165 42 1 6.2234 -0.8708 -1.8424 43 1 5.7433 -0.3824 -3.5013 44 1 4.6160 0.8983 -1.4248 45 1 3.5563 0.3532 -2.7634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707941234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:32 Heat of formation + Delta-G solvation = -57.245208 kcal Electronic energy + Delta-G solvation = -21332.968106 eV Core-core repulsion = 18349.615182 eV Total energy + Delta-G solvation = -2983.352924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99770 -37.37854 -35.90206 -33.29149 -32.51954 -30.12342 -29.35313 -27.57133 -26.73746 -25.82696 -24.03855 -21.76655 -20.99354 -20.94755 -19.88796 -18.70459 -16.86348 -16.71403 -15.70500 -15.45458 -15.36899 -14.53220 -14.29912 -14.22577 -13.79699 -13.67064 -13.43453 -12.79962 -12.51179 -12.49332 -12.32744 -12.15756 -11.71490 -11.44877 -11.32528 -10.94196 -10.90556 -10.81559 -10.78721 -10.70974 -10.61936 -10.50711 -10.41958 -10.21546 -10.10151 -9.80136 -9.09674 -8.75526 -8.37264 -8.01616 -6.05685 -4.03610 3.28053 3.34755 3.36552 4.03229 4.40397 4.41764 4.45843 4.62363 4.73867 5.01232 5.12932 5.20855 5.25725 5.30989 5.37413 5.48683 5.50118 5.50887 5.60072 5.61381 5.66722 5.73444 5.74801 5.77344 5.87060 5.89224 5.89761 5.92575 5.97739 6.04691 6.13577 6.16543 6.20239 6.30952 6.33746 6.41456 6.56292 6.67878 7.07311 7.30801 7.38489 7.67286 8.13385 8.76240 9.08017 9.54448 11.07590 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.004229 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.248161 B = 6619.356541 C = 6897.392502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.520 5.520 3 C 0.059 3.941 4 C 0.062 3.938 5 O -0.363 6.363 6 C 0.168 3.832 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.086 3.914 16 H 0.040 0.960 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.093 4.093 20 H 0.079 0.921 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.086 4.086 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.016 0.984 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.037 0.963 33 H -0.001 1.001 34 H -0.005 1.005 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -3.397 -21.614 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.244 5.244 3 C -0.069 4.069 4 C -0.016 4.016 5 O -0.282 6.282 6 C 0.092 3.908 7 C -0.551 4.551 8 H 0.101 0.899 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.192 1.192 15 C -0.022 4.022 16 H 0.058 0.942 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.112 4.112 20 H 0.098 0.902 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.104 4.104 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.017 0.983 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.052 -3.787 -20.998 21.435 hybrid contribution -1.099 1.473 -0.246 1.854 sum -3.151 -2.314 -21.244 21.601 Atomic orbital electron populations 1.22431 0.87976 1.01801 1.00346 1.61982 1.07131 1.13453 1.41792 1.22181 1.01405 0.88141 0.95177 1.22348 0.96150 0.94637 0.88502 1.88008 1.69279 1.56302 1.14585 1.20573 0.94935 0.93714 0.81562 1.20900 1.28485 1.16280 0.89432 0.89917 1.24762 0.95622 0.96556 0.96056 1.69879 1.42373 1.40397 1.00967 0.86867 0.81153 0.83351 0.78456 1.20007 1.20861 1.19190 1.22598 0.94634 0.93854 0.91111 0.94206 1.22904 0.97367 0.94231 1.01033 1.22760 0.94513 0.99082 0.99131 1.22383 0.95629 0.96206 0.96933 0.90244 1.22583 0.98511 0.97082 0.97536 1.22580 0.97834 0.95508 1.00386 1.22612 0.97121 0.97986 0.98218 1.22463 0.93659 0.93736 1.00579 0.88456 0.91392 0.91032 0.96537 0.89656 0.94639 0.94383 0.94507 0.98338 0.98701 0.92473 0.90024 0.92292 0.91723 0.91798 0.91769 0.92102 0.91331 0.92052 0.91604 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.09 60.06 0.55 0.85 16 2 N -0.52 -7.86 4.55 -232.97 -1.06 -8.92 16 3 C 0.06 0.89 5.14 -3.83 -0.02 0.87 16 4 C 0.06 1.12 5.99 37.15 0.22 1.34 16 5 O -0.36 -8.71 10.27 -35.23 -0.36 -9.07 16 6 C 0.17 4.38 4.76 36.00 0.17 4.55 16 7 C -0.51 -15.60 9.99 -34.44 -0.34 -15.95 16 8 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 11 Si 0.87 21.80 27.47 -169.99 -4.67 17.14 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 15 C 0.09 1.09 2.14 -66.12 -0.14 0.95 16 16 H 0.04 0.49 7.27 -51.92 -0.38 0.11 16 17 C -0.12 -1.34 5.10 -23.73 -0.12 -1.47 16 18 C -0.12 -1.16 6.50 -24.09 -0.16 -1.32 16 19 C -0.09 -1.01 3.69 -88.39 -0.33 -1.34 16 20 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 21 C -0.12 -1.12 6.34 -24.94 -0.16 -1.27 16 22 C -0.13 -1.22 6.92 -24.55 -0.17 -1.39 16 23 C -0.12 -1.34 5.63 -24.94 -0.14 -1.48 16 24 C -0.09 -1.08 2.50 -88.39 -0.22 -1.30 16 25 H 0.10 1.54 7.97 -51.93 -0.41 1.13 16 26 H 0.07 0.84 6.63 -51.93 -0.34 0.49 16 27 H 0.07 1.05 6.44 -51.93 -0.33 0.71 16 28 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 29 H 0.09 1.32 5.61 -51.93 -0.29 1.02 16 30 H 0.04 0.46 8.11 -51.93 -0.42 0.04 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.64 6.37 -51.93 -0.33 0.31 16 33 H 0.00 -0.03 7.20 -51.93 -0.37 -0.40 16 34 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 35 H 0.27 7.70 8.31 -40.82 -0.34 7.37 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 38 H 0.06 0.58 7.22 -51.93 -0.37 0.20 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.56 7.24 -51.93 -0.38 0.18 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.76 7.34 -51.93 -0.38 0.38 16 45 H 0.06 0.64 7.28 -51.93 -0.38 0.26 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -31.88 337.82 -9.35 -41.23 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.17 Total: -3.18 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.96 Total: -14.91 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.29 Total: -36.29 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.36 Total: -9.07 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.88 -9.35 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707941234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.016 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds