Wall clock time and date at job start Mon Mar 30 2020 07:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99906 * 2 1 4 4 C 1.52990 * 109.47606 * 66.04529 * 3 2 1 5 5 O 1.42904 * 109.47140 * 64.99805 * 4 3 2 6 6 C 1.42893 * 114.00380 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47421 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00094 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99938 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99925 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00334 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46831 * 90.00141 * 11 9 7 13 13 H 1.48497 * 109.47440 * 210.00157 * 11 9 7 14 14 H 1.48501 * 109.47189 * 330.00530 * 11 9 7 15 15 C 1.46895 * 110.99962 * 236.04256 * 2 1 3 16 16 H 1.09010 * 110.51705 * 66.05428 * 15 2 1 17 17 C 1.54847 * 110.46679 * 303.49091 * 15 2 1 18 18 C 1.56746 * 102.80837 * 202.95666 * 17 15 2 19 19 C 1.54179 * 103.40455 * 38.31907 * 18 17 15 20 20 H 1.08999 * 111.46102 * 98.24172 * 19 18 17 21 21 C 1.54344 * 108.84414 * 221.57511 * 19 18 17 22 22 C 1.55065 * 103.91614 * 139.88452 * 21 19 18 23 23 C 1.55058 * 102.11170 * 319.97733 * 22 21 19 24 24 C 1.54185 * 110.46651 * 188.60729 * 15 2 1 25 25 H 1.08995 * 111.45857 * 20.62420 * 24 15 2 26 26 H 1.08995 * 109.47051 * 178.38797 * 1 2 3 27 27 H 1.09005 * 109.46974 * 298.38796 * 1 2 3 28 28 H 1.09000 * 109.46938 * 58.38353 * 1 2 3 29 29 H 1.09001 * 109.47052 * 186.05136 * 3 2 1 30 30 H 1.08998 * 109.46770 * 306.03898 * 3 2 1 31 31 H 1.08997 * 109.47674 * 184.99893 * 4 3 2 32 32 H 1.09005 * 109.47415 * 305.00264 * 4 3 2 33 33 H 1.09005 * 109.47259 * 300.00390 * 6 5 4 34 34 H 1.09004 * 109.47274 * 59.99786 * 6 5 4 35 35 H 0.96998 * 120.00199 * 180.02562 * 10 9 7 36 36 H 1.08996 * 110.75956 * 321.46082 * 17 15 2 37 37 H 1.09001 * 110.75773 * 84.65708 * 17 15 2 38 38 H 1.08997 * 111.37294 * 279.68094 * 18 17 15 39 39 H 1.08998 * 110.41246 * 156.49872 * 18 17 15 40 40 H 1.08995 * 110.54124 * 21.27836 * 21 19 18 41 41 H 1.09005 * 110.53850 * 258.49301 * 21 19 18 42 42 H 1.09002 * 110.90454 * 78.18110 * 22 21 19 43 43 H 1.09000 * 110.89990 * 201.76661 * 22 21 19 44 44 H 1.09004 * 110.53490 * 158.63203 * 23 22 21 45 45 H 1.09002 * 110.53415 * 281.41235 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0576 1.3181 5 8 2.2956 1.3977 2.3978 6 6 2.0215 1.9629 3.6812 7 6 2.7697 1.1937 4.7392 8 1 3.3927 0.3571 4.4595 9 6 2.6590 1.5580 6.0644 10 7 3.3124 0.8869 6.9876 11 14 1.5820 3.0054 6.5483 12 1 0.2032 2.5267 6.8222 13 1 2.1344 3.6476 7.7680 14 1 1.5520 3.9927 5.4394 15 6 1.9954 -0.7660 -1.1375 16 1 1.7455 -0.2743 -2.0777 17 6 1.4421 -2.2121 -1.1189 18 6 2.5081 -3.0028 -1.9528 19 6 3.8439 -2.3646 -1.5221 20 1 4.3429 -2.9610 -0.7584 21 6 4.7352 -2.1841 -2.7693 22 6 5.4012 -0.8004 -2.5546 23 6 4.2333 0.0357 -1.9704 24 6 3.5220 -0.9406 -1.0097 25 1 3.8546 -0.8011 0.0189 26 1 -0.3633 -1.0272 -0.0289 27 1 -0.3633 0.4886 0.9041 28 1 -0.3633 0.5387 -0.8751 29 1 3.0797 1.3445 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 1.9439 3.1012 1.2830 32 1 0.5532 2.0059 1.4691 33 1 2.3416 3.0048 3.6954 34 1 0.9512 1.9091 3.8809 35 1 3.2342 1.1429 7.9199 36 1 1.3872 -2.5917 -0.0987 37 1 0.4650 -2.2581 -1.5998 38 1 2.3512 -2.8726 -3.0235 39 1 2.4886 -4.0604 -1.6896 40 1 4.1291 -2.1803 -3.6751 41 1 5.4903 -2.9688 -2.8165 42 1 6.2234 -0.8708 -1.8424 43 1 5.7433 -0.3824 -3.5013 44 1 4.6160 0.8983 -1.4248 45 1 3.5563 0.3532 -2.7634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707941234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:31 Heat of formation + Delta-G solvation = -77.779081 kcal Electronic energy + Delta-G solvation = -21333.858522 eV Core-core repulsion = 18349.615182 eV Total energy + Delta-G solvation = -2984.243339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95280 -38.86996 -37.25714 -34.88268 -34.12715 -31.33388 -30.62979 -29.38457 -27.75960 -26.81912 -25.12240 -23.93924 -22.19053 -21.82531 -20.82876 -19.65970 -19.02477 -17.88238 -17.39954 -16.71856 -16.39536 -16.35897 -15.64107 -15.39479 -15.06812 -14.72527 -14.60390 -14.36926 -14.11754 -13.72510 -13.39159 -13.22179 -13.13630 -12.79865 -12.69706 -12.61235 -12.34723 -11.85382 -11.82053 -11.70531 -11.63671 -11.60119 -11.55160 -11.44187 -11.32626 -11.25747 -10.99056 -10.91204 -10.28019 -9.09364 -8.36787 -6.44268 1.31949 1.35547 1.46466 2.29379 2.95423 2.96127 3.15144 3.53103 3.57252 3.75969 4.12547 4.15873 4.26356 4.31713 4.38178 4.40094 4.46409 4.50681 4.53708 4.57950 4.64142 4.67415 4.69122 4.73950 4.79857 4.85397 4.88966 4.97662 5.02578 5.04753 5.08073 5.10415 5.11917 5.21614 5.28217 5.39210 5.44116 5.45216 5.52977 5.58782 5.95312 6.22451 6.34505 6.59992 6.82239 7.20522 8.80768 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.004229 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.248161 B = 6619.356541 C = 6897.392502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.065 3.935 4 C 0.052 3.948 5 O -0.392 6.392 6 C 0.180 3.820 7 C -0.542 4.542 8 H 0.026 0.974 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.957 3.043 12 H -0.260 1.260 13 H -0.272 1.272 14 H -0.246 1.246 15 C 0.089 3.911 16 H 0.056 0.944 17 C -0.117 4.117 18 C -0.108 4.108 19 C -0.097 4.097 20 H 0.062 0.938 21 C -0.112 4.112 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.089 4.089 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.009 0.991 34 H 0.006 0.994 35 H 0.273 0.727 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 -1.987 -23.875 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.062 4.062 4 C -0.025 4.025 5 O -0.311 6.311 6 C 0.104 3.896 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.185 4.185 10 N -0.583 5.583 11 Si 0.778 3.222 12 H -0.184 1.184 13 H -0.197 1.197 14 H -0.170 1.170 15 C -0.018 4.018 16 H 0.074 0.926 17 C -0.155 4.155 18 C -0.146 4.146 19 C -0.116 4.116 20 H 0.081 0.919 21 C -0.149 4.149 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.108 4.108 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.024 0.976 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.786 -2.388 -23.287 23.713 hybrid contribution -0.487 0.939 0.454 1.151 sum -4.272 -1.449 -22.833 23.274 Atomic orbital electron populations 1.22401 0.87006 1.02418 1.00445 1.61923 1.08299 1.13683 1.43714 1.22101 1.01104 0.88662 0.94356 1.22712 0.96416 0.95503 0.87836 1.87973 1.70530 1.57550 1.15049 1.20272 0.94513 0.93172 0.81667 1.21150 1.29159 1.15883 0.91801 0.95524 1.25848 0.97036 1.00147 0.95461 1.70039 1.43949 1.42575 1.01758 0.85592 0.78955 0.78842 0.78831 1.18417 1.19676 1.16976 1.22635 0.94199 0.94200 0.90801 0.92599 1.22884 0.98811 0.93676 1.00093 1.22744 0.92880 0.99035 0.99938 1.22387 0.96793 0.94935 0.97461 0.91915 1.22553 0.98457 0.96906 0.97011 1.22586 0.97045 0.95753 1.00841 1.22574 0.97700 0.97274 0.97984 1.22395 0.94285 0.95593 0.98531 0.93086 0.90733 0.92720 0.94322 0.90658 0.91485 0.92828 0.93448 0.97318 0.97635 0.91820 0.92640 0.90541 0.89641 0.91178 0.90104 0.91291 0.92473 0.90211 0.92883 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.09 127.69 1.16 1.80 16 2 N -0.55 -16.50 4.55 -890.99 -4.06 -20.56 16 3 C 0.07 1.93 5.14 86.30 0.44 2.37 16 4 C 0.05 1.86 5.99 71.98 0.43 2.29 16 5 O -0.39 -19.24 10.27 -148.98 -1.53 -20.77 16 6 C 0.18 9.43 4.76 71.24 0.34 9.77 16 7 C -0.54 -34.35 9.99 25.60 0.26 -34.09 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 9 C 0.01 0.78 5.47 84.66 0.46 1.24 16 10 N -0.94 -60.90 13.96 21.45 0.30 -60.60 16 11 Si 0.96 44.51 27.47 68.60 1.88 46.40 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 14 H -0.25 -10.58 6.54 99.48 0.65 -9.92 16 15 C 0.09 2.17 2.14 45.95 0.10 2.27 16 16 H 0.06 1.20 7.27 -2.38 -0.02 1.18 16 17 C -0.12 -2.56 5.10 32.54 0.17 -2.39 16 18 C -0.11 -1.96 6.50 32.30 0.21 -1.75 16 19 C -0.10 -2.08 3.69 -9.35 -0.03 -2.11 16 20 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.11 -1.87 6.34 31.76 0.20 -1.67 16 22 C -0.12 -2.27 6.92 32.01 0.22 -2.05 16 23 C -0.12 -2.50 5.63 31.75 0.18 -2.32 16 24 C -0.09 -2.29 2.50 -9.35 -0.02 -2.31 16 25 H 0.05 1.77 7.97 -2.39 -0.02 1.75 16 26 H 0.07 1.76 6.63 -2.39 -0.02 1.74 16 27 H 0.05 1.55 6.44 -2.38 -0.02 1.54 16 28 H 0.04 0.80 8.13 -2.39 -0.02 0.78 16 29 H 0.08 2.35 5.61 -2.39 -0.01 2.34 16 30 H 0.07 1.56 8.11 -2.39 -0.02 1.54 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.58 6.37 -2.38 -0.02 1.57 16 33 H 0.01 0.46 7.20 -2.38 -0.02 0.44 16 34 H 0.01 0.30 7.57 -2.38 -0.02 0.28 16 35 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.39 7.82 -2.39 -0.02 1.37 16 38 H 0.09 1.23 7.22 -2.39 -0.02 1.21 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.12 7.24 -2.39 -0.02 1.10 16 41 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.05 1.24 7.34 -2.39 -0.02 1.23 16 45 H 0.08 1.39 7.28 -2.39 -0.02 1.38 16 Total: -1.00 -72.28 337.82 1.58 -70.69 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.88 Total: 13.79 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 4.11 Total: -28.95 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -3.76 Total: -81.16 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.53 Total: -20.77 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -72.28 1.58 -70.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707941234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.086 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds