Wall clock time and date at job start Mon Mar 30 2020 08:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00084 * 2 1 4 4 C 1.53004 * 109.46872 * 66.04380 * 3 2 1 5 5 C 1.53007 * 109.46648 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46717 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46634 * 179.97438 * 6 5 4 8 8 H 1.07991 * 120.00055 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99509 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99908 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00195 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47200 * 90.00124 * 11 9 7 13 13 H 1.48505 * 109.47162 * 210.00184 * 11 9 7 14 14 H 1.48503 * 109.47132 * 330.00325 * 11 9 7 15 15 C 1.46901 * 110.99863 * 236.04346 * 2 1 3 16 16 H 1.09001 * 109.46874 * 63.95570 * 15 2 1 17 17 C 1.53000 * 109.46769 * 183.95290 * 15 2 1 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 15 2 19 19 C 1.53006 * 109.47127 * 300.00449 * 18 17 15 20 20 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 21 21 C 1.52996 * 109.46975 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47092 * 60.00174 * 20 19 18 23 23 C 1.52996 * 109.47195 * 303.95371 * 15 2 1 24 24 H 1.08999 * 109.47597 * 183.95328 * 1 2 3 25 25 H 1.09000 * 109.47264 * 303.95931 * 1 2 3 26 26 H 1.09008 * 109.47100 * 63.95253 * 1 2 3 27 27 H 1.08992 * 109.46888 * 186.04385 * 3 2 1 28 28 H 1.09005 * 109.46697 * 306.04718 * 3 2 1 29 29 H 1.08992 * 109.47368 * 299.99711 * 4 3 2 30 30 H 1.08996 * 109.47017 * 60.00510 * 4 3 2 31 31 H 1.08992 * 109.47038 * 299.99959 * 5 4 3 32 32 H 1.09005 * 109.46771 * 60.00429 * 5 4 3 33 33 H 1.08996 * 109.47353 * 300.00394 * 6 5 4 34 34 H 1.09005 * 109.46899 * 60.00814 * 6 5 4 35 35 H 0.97003 * 120.00318 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47398 * 300.00295 * 17 15 2 37 37 H 1.09001 * 109.47194 * 60.00475 * 17 15 2 38 38 H 1.08998 * 109.47533 * 59.99948 * 18 17 15 39 39 H 1.08996 * 109.47853 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 41 41 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 42 42 H 1.08996 * 109.47261 * 180.02562 * 21 20 19 43 43 H 1.09004 * 109.47368 * 299.99783 * 21 20 19 44 44 H 1.09001 * 109.47372 * 59.99628 * 21 20 19 45 45 H 1.09002 * 109.47067 * 299.99853 * 22 20 19 46 46 H 1.09000 * 109.47312 * 59.99880 * 22 20 19 47 47 H 1.09004 * 109.46930 * 179.97438 * 22 20 19 48 48 H 1.08992 * 109.47554 * 299.99900 * 23 15 2 49 49 H 1.09004 * 109.47108 * 60.00150 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1803 3.4857 1.3185 6 6 1.8157 4.1719 2.6365 7 6 2.3569 5.5784 2.6369 8 1 2.9056 5.9461 1.7825 9 6 2.1515 6.3956 3.7282 10 7 2.6234 7.6232 3.7285 11 14 1.2031 5.7593 5.2064 12 1 2.1460 5.1316 6.1667 13 1 0.5015 6.8886 5.8680 14 1 0.2078 4.7517 4.7596 15 6 1.9954 -0.7660 -1.1376 16 1 1.7043 -0.2799 -2.0688 17 6 3.5217 -0.8264 -1.0491 18 6 4.0700 -1.6237 -2.2342 19 6 3.5006 -3.0434 -2.2010 20 6 1.9744 -2.9830 -2.2894 21 6 1.4050 -4.4027 -2.2556 22 6 1.5659 -2.3002 -3.5963 23 6 1.4260 -2.1857 -1.1036 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3634 0.5741 0.8524 26 1 -0.3634 0.4513 -0.9234 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8310 29 1 0.5472 2.0845 1.4265 30 1 2.0658 1.5016 2.1492 31 1 3.2645 3.4582 1.2105 32 1 1.7463 4.0418 0.4875 33 1 0.7314 4.1993 2.7441 34 1 2.2495 3.6158 3.4677 35 1 2.4786 8.1983 4.4961 36 1 3.9273 0.1850 -1.0732 37 1 3.8127 -1.3125 -0.1180 38 1 3.7790 -1.1373 -3.1653 39 1 5.1573 -1.6671 -2.1711 40 1 3.7917 -3.5299 -1.2700 41 1 3.8909 -3.6113 -3.0456 42 1 0.3177 -4.3597 -2.3190 43 1 1.7956 -4.9711 -3.0997 44 1 1.6961 -4.8888 -1.3244 45 1 1.9715 -1.2887 -3.6200 46 1 1.9566 -2.8681 -4.4406 47 1 0.4785 -2.2575 -3.6595 48 1 1.7171 -2.6718 -0.1726 49 1 0.3387 -2.1427 -1.1666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708584202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:54:02 Heat of formation + Delta-G solvation = -38.133962 kcal Electronic energy + Delta-G solvation = -21153.648555 eV Core-core repulsion = 18306.957452 eV Total energy + Delta-G solvation = -2846.691103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.16426 -37.20861 -34.47744 -33.00845 -32.23123 -30.16812 -28.67634 -27.61691 -27.06322 -25.68276 -24.07610 -21.88819 -21.35733 -20.13435 -19.90049 -18.65376 -16.65403 -16.15696 -15.43720 -15.08793 -14.78660 -14.53645 -14.45482 -14.15349 -13.79239 -13.56186 -13.15984 -12.96584 -12.63711 -12.38673 -12.33701 -12.28195 -11.90682 -11.79057 -11.62445 -11.45923 -11.38042 -11.18011 -11.10542 -11.00213 -10.71986 -10.55192 -10.40173 -10.23917 -9.98588 -9.83105 -9.60614 -9.41799 -9.10485 -8.48967 -8.21977 -5.99774 -3.97086 3.34615 3.41442 3.46332 3.86202 4.41425 4.43419 4.49891 4.61753 4.85550 4.98999 5.09163 5.14276 5.18261 5.25065 5.31325 5.34376 5.37879 5.41302 5.45484 5.47127 5.56627 5.57971 5.65152 5.70283 5.74868 5.79166 5.81415 5.89380 5.94161 5.94890 6.02378 6.07105 6.10783 6.14717 6.16683 6.26331 6.34274 6.47148 6.72167 6.83408 6.97580 7.17983 7.23373 7.39529 7.52451 7.85865 8.59906 9.05723 9.63435 11.13901 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.003063 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.453177 B = 9139.548880 C = 9440.069167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.052 3.948 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.013 4.013 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.064 3.936 10 N -0.906 5.906 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.085 3.915 16 H 0.040 0.960 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.064 4.064 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.101 4.101 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.077 0.923 28 H 0.029 0.971 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.013 0.987 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -24.481 -13.787 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.139 4.139 6 C -0.051 4.051 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.137 4.137 10 N -0.546 5.546 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.023 4.023 16 H 0.058 0.942 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.145 4.145 20 C -0.065 4.065 21 C -0.198 4.198 22 C -0.203 4.203 23 C -0.139 4.139 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.039 0.961 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.771 -24.545 -13.248 27.949 hybrid contribution -0.777 0.294 0.108 0.838 sum -2.548 -24.251 -13.140 27.700 Atomic orbital electron populations 1.22461 0.87924 1.01762 1.00700 1.62050 1.07518 1.14314 1.42457 1.22294 1.00280 0.86949 0.98008 1.21701 1.00701 0.96769 0.96209 1.21422 0.99897 0.92789 0.99836 1.19564 0.96325 0.96142 0.93056 1.21200 1.35049 0.95808 1.03635 0.91152 1.25053 0.95402 0.94738 0.98473 1.69923 1.46548 1.07229 1.30871 0.86757 0.80774 0.78579 0.83054 1.20309 1.21487 1.19001 1.21655 0.95000 0.93893 0.91794 0.94223 1.21651 0.94271 1.00537 0.98831 1.21574 0.99917 0.95640 0.98678 1.21600 0.94276 0.96916 1.01712 1.20541 0.95394 0.95180 0.95368 1.21850 1.00657 0.95610 1.01634 1.21986 1.00996 1.00862 0.96423 1.21697 0.99795 0.94417 0.98002 0.91543 0.90875 0.96065 0.90518 0.95263 0.92647 0.91765 0.92918 0.93153 0.96822 0.97105 0.92828 0.91597 0.91079 0.91890 0.91883 0.91877 0.92240 0.92781 0.92796 0.92639 0.92047 0.92894 0.92950 0.91133 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.91 60.06 0.54 0.76 16 2 N -0.54 -6.86 4.63 -234.88 -1.09 -7.94 16 3 C 0.05 0.74 4.77 -3.82 -0.02 0.72 16 4 C -0.12 -1.93 5.15 -26.73 -0.14 -2.07 16 5 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 6 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 7 C -0.52 -15.24 9.66 -34.44 -0.33 -15.58 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 10 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 11 Si 0.88 22.30 27.47 -169.99 -4.67 17.64 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 15 C 0.08 0.91 1.67 -67.71 -0.11 0.80 16 16 H 0.04 0.45 6.43 -51.93 -0.33 0.11 16 17 C -0.12 -1.18 5.00 -26.73 -0.13 -1.32 16 18 C -0.12 -1.02 5.65 -26.73 -0.15 -1.17 16 19 C -0.11 -0.83 4.73 -26.73 -0.13 -0.96 16 20 C -0.06 -0.50 0.77 -154.48 -0.12 -0.62 16 21 C -0.14 -0.97 8.47 37.16 0.31 -0.66 16 22 C -0.15 -1.12 7.78 37.16 0.29 -0.83 16 23 C -0.10 -0.94 3.65 -26.71 -0.10 -1.04 16 24 H 0.07 0.68 6.24 -51.93 -0.32 0.36 16 25 H 0.07 0.91 6.30 -51.93 -0.33 0.58 16 26 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 27 H 0.08 1.07 5.83 -51.93 -0.30 0.77 16 28 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.05 0.91 6.47 -51.93 -0.34 0.58 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 34 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.07 0.73 6.20 -51.93 -0.32 0.40 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.58 6.35 -51.93 -0.33 0.25 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -30.54 355.91 -9.61 -40.15 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -9.55 Total: -4.62 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -0.44 Total: -22.78 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.31 Total: -35.75 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.54 -9.61 -40.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708584202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.016 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds