Wall clock time and date at job start Mon Mar 30 2020 08:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00084 * 2 1 4 4 C 1.53004 * 109.46872 * 66.04380 * 3 2 1 5 5 C 1.53007 * 109.46648 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46717 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46634 * 179.97438 * 6 5 4 8 8 H 1.07991 * 120.00055 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99509 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99908 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00195 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47200 * 90.00124 * 11 9 7 13 13 H 1.48505 * 109.47162 * 210.00184 * 11 9 7 14 14 H 1.48503 * 109.47132 * 330.00325 * 11 9 7 15 15 C 1.46901 * 110.99863 * 236.04346 * 2 1 3 16 16 H 1.09001 * 109.46874 * 63.95570 * 15 2 1 17 17 C 1.53000 * 109.46769 * 183.95290 * 15 2 1 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 15 2 19 19 C 1.53006 * 109.47127 * 300.00449 * 18 17 15 20 20 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 21 21 C 1.52996 * 109.46975 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47092 * 60.00174 * 20 19 18 23 23 C 1.52996 * 109.47195 * 303.95371 * 15 2 1 24 24 H 1.08999 * 109.47597 * 183.95328 * 1 2 3 25 25 H 1.09000 * 109.47264 * 303.95931 * 1 2 3 26 26 H 1.09008 * 109.47100 * 63.95253 * 1 2 3 27 27 H 1.08992 * 109.46888 * 186.04385 * 3 2 1 28 28 H 1.09005 * 109.46697 * 306.04718 * 3 2 1 29 29 H 1.08992 * 109.47368 * 299.99711 * 4 3 2 30 30 H 1.08996 * 109.47017 * 60.00510 * 4 3 2 31 31 H 1.08992 * 109.47038 * 299.99959 * 5 4 3 32 32 H 1.09005 * 109.46771 * 60.00429 * 5 4 3 33 33 H 1.08996 * 109.47353 * 300.00394 * 6 5 4 34 34 H 1.09005 * 109.46899 * 60.00814 * 6 5 4 35 35 H 0.97003 * 120.00318 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47398 * 300.00295 * 17 15 2 37 37 H 1.09001 * 109.47194 * 60.00475 * 17 15 2 38 38 H 1.08998 * 109.47533 * 59.99948 * 18 17 15 39 39 H 1.08996 * 109.47853 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 41 41 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 42 42 H 1.08996 * 109.47261 * 180.02562 * 21 20 19 43 43 H 1.09004 * 109.47368 * 299.99783 * 21 20 19 44 44 H 1.09001 * 109.47372 * 59.99628 * 21 20 19 45 45 H 1.09002 * 109.47067 * 299.99853 * 22 20 19 46 46 H 1.09000 * 109.47312 * 59.99880 * 22 20 19 47 47 H 1.09004 * 109.46930 * 179.97438 * 22 20 19 48 48 H 1.08992 * 109.47554 * 299.99900 * 23 15 2 49 49 H 1.09004 * 109.47108 * 60.00150 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1803 3.4857 1.3185 6 6 1.8157 4.1719 2.6365 7 6 2.3569 5.5784 2.6369 8 1 2.9056 5.9461 1.7825 9 6 2.1515 6.3956 3.7282 10 7 2.6234 7.6232 3.7285 11 14 1.2031 5.7593 5.2064 12 1 2.1460 5.1316 6.1667 13 1 0.5015 6.8886 5.8680 14 1 0.2078 4.7517 4.7596 15 6 1.9954 -0.7660 -1.1376 16 1 1.7043 -0.2799 -2.0688 17 6 3.5217 -0.8264 -1.0491 18 6 4.0700 -1.6237 -2.2342 19 6 3.5006 -3.0434 -2.2010 20 6 1.9744 -2.9830 -2.2894 21 6 1.4050 -4.4027 -2.2556 22 6 1.5659 -2.3002 -3.5963 23 6 1.4260 -2.1857 -1.1036 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3634 0.5741 0.8524 26 1 -0.3634 0.4513 -0.9234 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8310 29 1 0.5472 2.0845 1.4265 30 1 2.0658 1.5016 2.1492 31 1 3.2645 3.4582 1.2105 32 1 1.7463 4.0418 0.4875 33 1 0.7314 4.1993 2.7441 34 1 2.2495 3.6158 3.4677 35 1 2.4786 8.1983 4.4961 36 1 3.9273 0.1850 -1.0732 37 1 3.8127 -1.3125 -0.1180 38 1 3.7790 -1.1373 -3.1653 39 1 5.1573 -1.6671 -2.1711 40 1 3.7917 -3.5299 -1.2700 41 1 3.8909 -3.6113 -3.0456 42 1 0.3177 -4.3597 -2.3190 43 1 1.7956 -4.9711 -3.0997 44 1 1.6961 -4.8888 -1.3244 45 1 1.9715 -1.2887 -3.6200 46 1 1.9566 -2.8681 -4.4406 47 1 0.4785 -2.2575 -3.6595 48 1 1.7171 -2.6718 -0.1726 49 1 0.3387 -2.1427 -1.1666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708584202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:54:01 Heat of formation + Delta-G solvation = -54.749352 kcal Electronic energy + Delta-G solvation = -21154.369053 eV Core-core repulsion = 18306.957452 eV Total energy + Delta-G solvation = -2847.411601 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93632 -38.21406 -36.14979 -34.32547 -33.65305 -31.48199 -29.86975 -28.20442 -28.13584 -26.62652 -25.55305 -22.90308 -22.51899 -21.68511 -21.01617 -19.34111 -18.86272 -17.10136 -16.42994 -16.40169 -16.00075 -15.71373 -15.43274 -15.19751 -14.84296 -14.70977 -14.40138 -14.05734 -13.79266 -13.68745 -13.49565 -13.31398 -12.97692 -12.88672 -12.74688 -12.49287 -12.41122 -12.27517 -12.16282 -11.91175 -11.84812 -11.74769 -11.72303 -11.44326 -11.32004 -11.24631 -11.10242 -10.89626 -10.76656 -10.73676 -9.21840 -8.30033 -6.34114 1.35658 1.37373 1.50097 2.36305 2.90790 3.05250 3.71078 3.74610 3.94453 4.04246 4.11110 4.19337 4.27926 4.35784 4.46100 4.48609 4.52718 4.53033 4.56688 4.60719 4.66147 4.76105 4.81600 4.84063 4.85515 4.89055 4.99410 5.06475 5.10399 5.11038 5.14069 5.17315 5.18998 5.21166 5.23165 5.26516 5.32981 5.39297 5.48389 5.51211 5.57679 5.64396 5.65931 5.68417 6.15843 6.24505 6.29646 6.73994 7.30677 8.87009 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.003063 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.453177 B = 9139.548880 C = 9440.069167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.060 3.940 4 C -0.103 4.103 5 C -0.094 4.094 6 C -0.011 4.011 7 C -0.535 4.535 8 H 0.029 0.971 9 C 0.001 3.999 10 N -0.953 5.953 11 Si 0.954 3.046 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.247 1.247 15 C 0.086 3.914 16 H 0.036 0.964 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.105 4.105 20 C -0.062 4.062 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.096 4.096 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.077 0.923 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 -27.023 -13.700 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.068 4.068 4 C -0.141 4.141 5 C -0.132 4.132 6 C -0.048 4.048 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.196 4.196 10 N -0.594 5.594 11 Si 0.777 3.223 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.170 1.170 15 C -0.022 4.022 16 H 0.054 0.946 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.143 4.143 20 C -0.063 4.063 21 C -0.195 4.195 22 C -0.201 4.201 23 C -0.134 4.134 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.787 -27.108 -13.180 30.270 hybrid contribution -0.403 1.141 0.007 1.210 sum -3.190 -25.966 -13.173 29.291 Atomic orbital electron populations 1.22490 0.87252 1.02686 1.00426 1.62043 1.08222 1.13218 1.43609 1.22108 1.00437 0.87867 0.96396 1.21519 1.00681 0.94314 0.97598 1.21292 0.99737 0.94813 0.97401 1.19528 0.96155 0.93662 0.95501 1.21565 1.34823 0.98386 1.02505 0.95216 1.26079 0.96530 0.94818 1.02130 1.70077 1.48233 1.08863 1.32243 0.85600 0.79635 0.78476 0.78589 1.19073 1.20850 1.17019 1.21704 0.95230 0.94421 0.90823 0.94566 1.21632 0.94080 1.00145 0.99328 1.21551 1.00236 0.95895 0.97791 1.21591 0.94178 0.96382 1.02134 1.20532 0.95438 0.95571 0.94728 1.21825 1.00756 0.94889 1.02043 1.21969 1.01021 1.00488 0.96642 1.21654 0.99848 0.93443 0.98417 0.89983 0.91588 0.95927 0.90454 0.95563 0.92164 0.91837 0.93446 0.93743 0.96391 0.96461 0.92488 0.92712 0.91904 0.91725 0.91337 0.92056 0.91079 0.92607 0.91944 0.92622 0.92885 0.91973 0.92921 0.91826 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.91 127.69 1.14 1.56 16 2 N -0.55 -13.17 4.63 -897.02 -4.15 -17.32 16 3 C 0.06 1.64 4.77 86.30 0.41 2.05 16 4 C -0.10 -3.32 5.15 30.60 0.16 -3.16 16 5 C -0.09 -3.80 5.15 30.60 0.16 -3.65 16 6 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 7 C -0.53 -32.06 9.66 25.60 0.25 -31.82 16 8 H 0.03 1.95 7.99 -2.92 -0.02 1.93 16 9 C 0.00 0.05 5.47 84.66 0.46 0.51 16 10 N -0.95 -61.38 13.96 21.45 0.30 -61.08 16 11 Si 0.95 45.51 27.47 68.60 1.88 47.39 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 14 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 15 C 0.09 1.74 1.67 44.91 0.08 1.81 16 16 H 0.04 0.77 6.43 -2.39 -0.02 0.76 16 17 C -0.11 -2.25 5.00 30.59 0.15 -2.09 16 18 C -0.12 -1.81 5.65 30.60 0.17 -1.63 16 19 C -0.11 -1.42 4.73 30.60 0.14 -1.28 16 20 C -0.06 -0.85 0.77 -52.17 -0.04 -0.89 16 21 C -0.14 -1.59 8.47 71.98 0.61 -0.98 16 22 C -0.14 -1.93 7.78 71.98 0.56 -1.37 16 23 C -0.10 -1.62 3.65 30.61 0.11 -1.50 16 24 H 0.08 1.51 6.24 -2.39 -0.01 1.50 16 25 H 0.07 1.52 6.30 -2.39 -0.02 1.51 16 26 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.08 2.12 5.83 -2.39 -0.01 2.10 16 28 H 0.03 0.74 8.12 -2.38 -0.02 0.72 16 29 H 0.06 1.88 6.47 -2.39 -0.02 1.87 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 34 H 0.02 0.81 7.57 -2.38 -0.02 0.79 16 35 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 36 H 0.05 1.18 6.20 -2.39 -0.01 1.17 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 0.99 6.43 -2.39 -0.02 0.97 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.05 0.80 4.81 -2.39 -0.01 0.79 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.06 1.06 6.35 -2.38 -0.02 1.04 16 Total: -1.00 -65.71 355.91 3.33 -62.39 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.81 Total: 11.48 kcal Atomic # 6 Polarization: -47.33 SS G_CDS: 4.48 Total: -42.85 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -3.85 Total: -78.40 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.39 kcal Total: -65.71 3.33 -62.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708584202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.637 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds