Wall clock time and date at job start Mon Mar 30 2020 06:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.47250 * 2 1 4 4 C 1.46898 * 111.00046 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47186 * 34.99872 * 4 3 2 6 6 C 1.52998 * 109.47076 * 274.99489 * 4 3 2 7 7 C 1.53000 * 109.46897 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46997 * 60.00509 * 7 6 4 9 9 C 1.52998 * 109.46881 * 299.99500 * 8 7 6 10 10 H 1.09005 * 109.46941 * 180.02562 * 9 8 7 11 11 O 1.42901 * 109.47195 * 300.00241 * 9 8 7 12 12 C 1.42898 * 114.00140 * 265.18727 * 11 9 8 13 13 C 1.53002 * 109.47253 * 184.99081 * 12 11 9 14 14 C 1.50698 * 115.54868 * 185.81061 * 13 12 11 15 15 H 1.08001 * 120.00342 * 144.46371 * 14 13 12 16 16 C 1.37878 * 120.00255 * 324.46304 * 14 13 12 17 17 N 1.31511 * 119.99853 * 4.69082 * 16 14 13 18 18 Si 1.86793 * 120.00254 * 184.69622 * 16 14 13 19 19 H 1.48505 * 109.47257 * 89.99596 * 18 16 14 20 20 H 1.48500 * 109.47434 * 210.00106 * 18 16 14 21 21 H 1.48497 * 109.47286 * 329.99885 * 18 16 14 22 22 C 1.52997 * 117.50119 * 40.13681 * 13 12 11 23 23 C 1.52998 * 117.49687 * 331.47753 * 13 12 11 24 24 C 1.53000 * 109.46897 * 60.00438 * 9 8 7 25 25 H 1.08994 * 109.46984 * 60.00021 * 1 2 3 26 26 H 1.09002 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47025 * 300.00101 * 1 2 3 28 28 H 1.09000 * 109.47588 * 239.99408 * 2 1 3 29 29 H 1.09005 * 109.47510 * 119.99462 * 2 1 3 30 30 H 1.00897 * 110.99904 * 56.04222 * 3 2 1 31 31 H 1.09001 * 109.47426 * 300.00236 * 6 4 3 32 32 H 1.09005 * 109.46941 * 60.00070 * 6 4 3 33 33 H 1.08996 * 109.47307 * 299.99817 * 7 6 4 34 34 H 1.09002 * 109.46899 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46487 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.47310 * 59.99840 * 8 7 6 37 37 H 1.09006 * 109.47083 * 304.98465 * 12 11 9 38 38 H 1.09001 * 109.47685 * 64.98420 * 12 11 9 39 39 H 0.97001 * 120.00601 * 184.99693 * 17 16 14 40 40 H 1.09002 * 117.49576 * 0.02562 * 22 13 12 41 41 H 1.08998 * 117.50094 * 145.02238 * 22 13 12 42 42 H 1.08998 * 117.49772 * 214.98348 * 23 13 12 43 43 H 1.09003 * 117.49814 * 359.97438 * 23 13 12 44 44 H 1.09002 * 109.46899 * 179.97438 * 24 9 8 45 45 H 1.08996 * 109.47307 * 60.00183 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8741 0.5923 -0.5885 6 6 4.0007 1.3125 1.4379 7 6 5.5301 1.3539 1.4385 8 6 6.0048 2.6746 0.8291 9 6 5.4922 2.7864 -0.6082 10 1 5.8307 3.7271 -1.0425 11 8 5.9987 1.6960 -1.3806 12 6 7.1954 1.9997 -2.1000 13 6 7.5757 0.8095 -2.9831 14 6 8.8950 0.9286 -3.7016 15 1 9.5098 0.0533 -3.8504 16 6 9.3172 2.1551 -4.1691 17 7 8.6144 3.2356 -3.9082 18 14 10.8872 2.2819 -5.1732 19 1 10.5675 2.1208 -6.6144 20 1 11.5115 3.6107 -4.9501 21 1 11.8309 1.2150 -4.7533 22 6 6.4436 0.0732 -3.7022 23 6 7.1502 -0.5830 -2.5134 24 6 3.9628 2.7449 -0.6088 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6441 1.9013 0.7813 31 1 3.6148 2.1444 2.0270 32 1 3.6621 0.3718 1.8722 33 1 5.9164 0.5222 0.8494 34 1 5.8953 1.2738 2.4624 35 1 7.0944 2.7043 0.8300 36 1 5.6185 3.5063 1.4183 37 1 7.0309 2.8777 -2.7248 38 1 8.0019 2.2014 -1.3950 39 1 8.8708 4.0866 -4.2969 40 1 5.4279 0.4369 -3.5464 41 1 6.6531 -0.3255 -4.6947 42 1 7.8244 -1.4131 -2.7244 43 1 6.5998 -0.6513 -1.5750 44 1 3.5976 2.8250 -1.6327 45 1 3.5765 3.5766 -0.0197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712754271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:25 Heat of formation + Delta-G solvation = -42.745134 kcal Electronic energy + Delta-G solvation = -21634.144584 eV Core-core repulsion = 18651.420431 eV Total energy + Delta-G solvation = -2982.724153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.15364 -37.12337 -35.68497 -33.93981 -32.17392 -30.94661 -29.67605 -27.27260 -26.02105 -24.81921 -22.40863 -22.08505 -21.39786 -20.97295 -19.37435 -18.79897 -16.41027 -15.92210 -15.38784 -15.20779 -14.74178 -14.51639 -14.40357 -13.94135 -13.69712 -13.25771 -13.09875 -12.71439 -12.41565 -12.02570 -11.93850 -11.82051 -11.62446 -11.41797 -11.26614 -11.08321 -10.99616 -10.85150 -10.59354 -10.50008 -10.38403 -10.18210 -10.01228 -9.69046 -9.33704 -8.97561 -8.62699 -8.49144 -8.26358 -7.90842 -6.03064 -4.13761 3.26096 3.32945 3.36257 4.20679 4.33387 4.65719 4.96571 5.02626 5.04964 5.11713 5.21940 5.24237 5.43192 5.50357 5.59844 5.65626 5.70117 5.76442 5.81129 5.85601 5.88879 6.00808 6.06462 6.11123 6.21373 6.32161 6.39593 6.45947 6.48475 6.59566 6.65239 6.66919 6.71675 6.91271 7.05568 7.17194 7.20432 7.45148 7.48757 7.55316 7.62630 7.96259 8.27968 8.59796 8.87775 9.47668 10.93299 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027431 B = 0.004652 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.506825 B = 6016.836613 C = 6407.159587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 N -0.687 5.687 4 C 0.093 3.907 5 H 0.089 0.911 6 C -0.142 4.142 7 C -0.108 4.108 8 C -0.137 4.137 9 C 0.093 3.907 10 H 0.058 0.942 11 O -0.392 6.392 12 C 0.103 3.897 13 C 0.050 3.950 14 C -0.483 4.483 15 H 0.063 0.937 16 C 0.066 3.934 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.198 4.198 23 C -0.203 4.203 24 C -0.099 4.099 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.334 0.666 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.028 0.972 39 H 0.262 0.738 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 -1.096 10.037 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.317 5.317 4 C -0.017 4.017 5 H 0.107 0.893 6 C -0.181 4.181 7 C -0.146 4.146 8 C -0.175 4.175 9 C 0.034 3.966 10 H 0.076 0.924 11 O -0.312 6.312 12 C 0.028 3.972 13 C 0.050 3.950 14 C -0.520 4.520 15 H 0.081 0.919 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.236 4.236 23 C -0.240 4.240 24 C -0.137 4.137 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.151 0.849 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.267 -1.003 9.346 14.673 hybrid contribution 1.143 0.017 0.424 1.219 sum -10.124 -0.986 9.770 14.103 Atomic orbital electron populations 1.21769 0.95378 1.01421 1.02133 1.21929 0.95161 0.89987 1.00546 1.60651 1.08417 1.13185 1.49418 1.21519 0.85668 0.99736 0.94748 0.89295 1.22208 0.97271 1.00670 0.97963 1.21317 0.94439 0.99014 0.99796 1.21988 1.01119 0.97309 0.97086 1.21827 0.92829 0.91324 0.90611 0.92386 1.87798 1.44189 1.36002 1.63212 1.22556 0.82788 0.99584 0.92235 1.19032 0.93208 0.87338 0.95452 1.20632 1.02056 0.94013 1.35309 0.91863 1.25027 0.97246 0.95428 0.95830 1.69815 1.40115 0.99405 1.43270 0.86462 0.82968 0.77452 0.80445 1.20484 1.21108 1.19785 1.22887 0.97717 1.08167 0.94849 1.22771 1.04794 0.98775 0.97644 1.21569 0.94091 0.96380 1.01660 0.91863 0.92464 0.93161 0.90896 0.95611 0.84912 0.92576 0.92885 0.90845 0.93030 0.91794 0.92255 0.88413 0.95414 0.92749 0.91135 0.91273 0.91554 0.90737 0.90962 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.17 37.16 0.38 -0.99 16 2 C 0.05 0.60 6.20 -3.82 -0.02 0.57 16 3 N -0.69 -8.40 6.25 -106.72 -0.67 -9.07 16 4 C 0.09 1.29 2.32 -67.71 -0.16 1.13 16 5 H 0.09 1.49 7.34 -51.93 -0.38 1.11 16 6 C -0.14 -1.77 5.17 -26.73 -0.14 -1.91 16 7 C -0.11 -1.51 5.78 -26.73 -0.15 -1.67 16 8 C -0.14 -2.07 5.66 -26.73 -0.15 -2.22 16 9 C 0.09 1.60 2.94 -26.73 -0.08 1.52 16 10 H 0.06 1.05 7.66 -51.93 -0.40 0.65 16 11 O -0.39 -8.15 6.91 -35.23 -0.24 -8.40 16 12 C 0.10 2.51 4.82 37.16 0.18 2.69 16 13 C 0.05 1.29 2.46 -155.66 -0.38 0.90 16 14 C -0.48 -13.32 9.06 -34.44 -0.31 -13.63 16 15 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 16 C 0.07 1.79 5.40 -17.82 -0.10 1.70 16 17 N -0.89 -24.35 10.30 55.43 0.57 -23.77 16 18 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.20 -4.75 9.67 -26.70 -0.26 -5.01 16 23 C -0.20 -4.69 9.63 -26.70 -0.26 -4.94 16 24 C -0.10 -1.48 5.27 -26.73 -0.14 -1.62 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 29 H 0.03 0.28 7.44 -51.93 -0.39 -0.11 16 30 H 0.33 3.57 8.47 -39.29 -0.33 3.23 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 32 H 0.05 0.63 7.45 -51.93 -0.39 0.25 16 33 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.10 2.59 5.77 -51.93 -0.30 2.29 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.07 1.65 7.85 -51.93 -0.41 1.24 16 41 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.07 1.65 7.48 -51.93 -0.39 1.26 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -27.14 347.90 -10.13 -37.26 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -8.42 Total: 6.38 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -1.59 Total: -23.47 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: -0.10 Total: -32.85 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.24 Total: -8.40 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.14 -10.13 -37.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712754271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.480 kcal (2) G-P(sol) polarization free energy of solvation -27.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds