Wall clock time and date at job start Mon Mar 30 2020 06:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.47250 * 2 1 4 4 C 1.46898 * 111.00046 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47186 * 34.99872 * 4 3 2 6 6 C 1.52998 * 109.47076 * 274.99489 * 4 3 2 7 7 C 1.53000 * 109.46897 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46997 * 60.00509 * 7 6 4 9 9 C 1.52998 * 109.46881 * 299.99500 * 8 7 6 10 10 H 1.09005 * 109.46941 * 180.02562 * 9 8 7 11 11 O 1.42901 * 109.47195 * 300.00241 * 9 8 7 12 12 C 1.42898 * 114.00140 * 265.18727 * 11 9 8 13 13 C 1.53002 * 109.47253 * 184.99081 * 12 11 9 14 14 C 1.50698 * 115.54868 * 185.81061 * 13 12 11 15 15 H 1.08001 * 120.00342 * 144.46371 * 14 13 12 16 16 C 1.37878 * 120.00255 * 324.46304 * 14 13 12 17 17 N 1.31511 * 119.99853 * 4.69082 * 16 14 13 18 18 Si 1.86793 * 120.00254 * 184.69622 * 16 14 13 19 19 H 1.48505 * 109.47257 * 89.99596 * 18 16 14 20 20 H 1.48500 * 109.47434 * 210.00106 * 18 16 14 21 21 H 1.48497 * 109.47286 * 329.99885 * 18 16 14 22 22 C 1.52997 * 117.50119 * 40.13681 * 13 12 11 23 23 C 1.52998 * 117.49687 * 331.47753 * 13 12 11 24 24 C 1.53000 * 109.46897 * 60.00438 * 9 8 7 25 25 H 1.08994 * 109.46984 * 60.00021 * 1 2 3 26 26 H 1.09002 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47025 * 300.00101 * 1 2 3 28 28 H 1.09000 * 109.47588 * 239.99408 * 2 1 3 29 29 H 1.09005 * 109.47510 * 119.99462 * 2 1 3 30 30 H 1.00897 * 110.99904 * 56.04222 * 3 2 1 31 31 H 1.09001 * 109.47426 * 300.00236 * 6 4 3 32 32 H 1.09005 * 109.46941 * 60.00070 * 6 4 3 33 33 H 1.08996 * 109.47307 * 299.99817 * 7 6 4 34 34 H 1.09002 * 109.46899 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46487 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.47310 * 59.99840 * 8 7 6 37 37 H 1.09006 * 109.47083 * 304.98465 * 12 11 9 38 38 H 1.09001 * 109.47685 * 64.98420 * 12 11 9 39 39 H 0.97001 * 120.00601 * 184.99693 * 17 16 14 40 40 H 1.09002 * 117.49576 * 0.02562 * 22 13 12 41 41 H 1.08998 * 117.50094 * 145.02238 * 22 13 12 42 42 H 1.08998 * 117.49772 * 214.98348 * 23 13 12 43 43 H 1.09003 * 117.49814 * 359.97438 * 23 13 12 44 44 H 1.09002 * 109.46899 * 179.97438 * 24 9 8 45 45 H 1.08996 * 109.47307 * 60.00183 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8741 0.5923 -0.5885 6 6 4.0007 1.3125 1.4379 7 6 5.5301 1.3539 1.4385 8 6 6.0048 2.6746 0.8291 9 6 5.4922 2.7864 -0.6082 10 1 5.8307 3.7271 -1.0425 11 8 5.9987 1.6960 -1.3806 12 6 7.1954 1.9997 -2.1000 13 6 7.5757 0.8095 -2.9831 14 6 8.8950 0.9286 -3.7016 15 1 9.5098 0.0533 -3.8504 16 6 9.3172 2.1551 -4.1691 17 7 8.6144 3.2356 -3.9082 18 14 10.8872 2.2819 -5.1732 19 1 10.5675 2.1208 -6.6144 20 1 11.5115 3.6107 -4.9501 21 1 11.8309 1.2150 -4.7533 22 6 6.4436 0.0732 -3.7022 23 6 7.1502 -0.5830 -2.5134 24 6 3.9628 2.7449 -0.6088 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6441 1.9013 0.7813 31 1 3.6148 2.1444 2.0270 32 1 3.6621 0.3718 1.8722 33 1 5.9164 0.5222 0.8494 34 1 5.8953 1.2738 2.4624 35 1 7.0944 2.7043 0.8300 36 1 5.6185 3.5063 1.4183 37 1 7.0309 2.8777 -2.7248 38 1 8.0019 2.2014 -1.3950 39 1 8.8708 4.0866 -4.2969 40 1 5.4279 0.4369 -3.5464 41 1 6.6531 -0.3255 -4.6947 42 1 7.8244 -1.4131 -2.7244 43 1 6.5998 -0.6513 -1.5750 44 1 3.5976 2.8250 -1.6327 45 1 3.5765 3.5766 -0.0197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712754271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:24 Heat of formation + Delta-G solvation = -57.057626 kcal Electronic energy + Delta-G solvation = -21634.765220 eV Core-core repulsion = 18651.420431 eV Total energy + Delta-G solvation = -2983.344789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47808 -38.77140 -37.13593 -35.27848 -34.23439 -31.97172 -30.94432 -28.29559 -28.03102 -26.77662 -23.48399 -23.15180 -22.92160 -22.51067 -21.04075 -20.39486 -18.34181 -17.26616 -16.87912 -16.52478 -16.21976 -15.93461 -15.76889 -15.59509 -15.02931 -14.67904 -14.32292 -14.07369 -13.81470 -13.46514 -13.40684 -13.09490 -12.94990 -12.75393 -12.68261 -12.55306 -12.36242 -12.28530 -12.08576 -12.04074 -11.97629 -11.67021 -11.41171 -11.27772 -10.97957 -10.83884 -10.60686 -10.32897 -9.83358 -9.24523 -8.07097 -6.26591 1.42400 1.43194 1.53718 2.39304 2.96729 3.11967 3.21304 3.66040 3.84336 3.90192 4.08376 4.19969 4.27411 4.36039 4.41738 4.46623 4.52625 4.59089 4.64763 4.66643 4.67800 4.69436 4.76719 4.89866 4.97442 4.98818 5.03248 5.07329 5.14355 5.20088 5.23180 5.26434 5.28233 5.36562 5.44203 5.44852 5.49752 5.62165 5.64960 5.93214 6.14713 6.29809 6.61245 6.69761 6.86778 7.37353 8.87434 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027431 B = 0.004652 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.506825 B = 6016.836613 C = 6407.159587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 N -0.691 5.691 4 C 0.100 3.900 5 H 0.055 0.945 6 C -0.132 4.132 7 C -0.105 4.105 8 C -0.132 4.132 9 C 0.083 3.917 10 H 0.043 0.957 11 O -0.396 6.396 12 C 0.128 3.872 13 C 0.015 3.985 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.964 3.036 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.269 1.269 22 C -0.191 4.191 23 C -0.181 4.181 24 C -0.091 4.091 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.347 0.653 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.005 0.995 39 H 0.264 0.736 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.109 -1.078 11.380 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 N -0.322 5.322 4 C -0.010 4.010 5 H 0.073 0.927 6 C -0.171 4.171 7 C -0.143 4.143 8 C -0.170 4.170 9 C 0.024 3.976 10 H 0.062 0.938 11 O -0.316 6.316 12 C 0.052 3.948 13 C 0.015 3.985 14 C -0.548 4.548 15 H 0.075 0.925 16 C -0.177 4.177 17 N -0.546 5.546 18 Si 0.789 3.211 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.194 1.194 22 C -0.229 4.229 23 C -0.219 4.219 24 C -0.129 4.129 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.166 0.834 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.229 -0.989 10.702 16.281 hybrid contribution 1.378 0.022 0.035 1.379 sum -10.851 -0.967 10.737 15.296 Atomic orbital electron populations 1.21717 0.93596 1.02328 1.02387 1.21940 0.96577 0.89231 0.99920 1.60565 1.07176 1.14120 1.50323 1.21297 0.86866 0.97575 0.95247 0.92685 1.22127 0.95780 1.02199 0.97003 1.21288 0.95737 0.97070 1.00236 1.21944 1.00014 0.99198 0.95825 1.22128 0.94459 0.89576 0.91428 0.93835 1.87776 1.42738 1.37573 1.63506 1.21987 0.83324 0.98170 0.91315 1.19227 0.93434 0.89024 0.96837 1.20881 1.03097 0.94281 1.36566 0.92491 1.25777 1.00236 0.94973 0.96670 1.69963 1.41411 0.99702 1.43565 0.85462 0.79225 0.77558 0.78895 1.19973 1.20500 1.19362 1.22805 0.97243 1.07797 0.95093 1.22721 1.04035 0.97524 0.97578 1.21506 0.92080 0.98207 1.01157 0.92640 0.91286 0.91813 0.92857 0.94947 0.83425 0.90220 0.91887 0.93738 0.90974 0.93674 0.89348 0.90876 0.97628 0.92603 0.91002 0.91394 0.90895 0.89879 0.93040 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.17 71.98 0.73 -1.59 16 2 C 0.05 1.10 6.20 86.30 0.54 1.64 16 3 N -0.69 -15.66 6.25 -491.56 -3.07 -18.73 16 4 C 0.10 2.67 2.32 44.92 0.10 2.78 16 5 H 0.05 1.86 7.34 -2.39 -0.02 1.84 16 6 C -0.13 -2.95 5.17 30.59 0.16 -2.80 16 7 C -0.11 -2.79 5.78 30.60 0.18 -2.62 16 8 C -0.13 -3.86 5.66 30.60 0.17 -3.68 16 9 C 0.08 2.87 2.94 30.59 0.09 2.96 16 10 H 0.04 1.62 7.66 -2.38 -0.02 1.60 16 11 O -0.40 -16.98 6.91 -148.98 -1.03 -18.01 16 12 C 0.13 6.47 4.82 71.98 0.35 6.81 16 13 C 0.02 0.80 2.46 -52.93 -0.13 0.67 16 14 C -0.51 -28.74 9.06 25.60 0.23 -28.51 16 15 H 0.06 3.17 7.82 -2.91 -0.02 3.15 16 16 C 0.02 1.26 5.40 84.66 0.46 1.72 16 17 N -0.91 -50.88 10.30 21.45 0.22 -50.66 16 18 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C -0.19 -9.30 9.67 30.62 0.30 -9.00 16 23 C -0.18 -8.44 9.63 30.62 0.29 -8.15 16 24 C -0.09 -2.67 5.27 30.60 0.16 -2.50 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 1.32 8.06 -2.39 -0.02 1.30 16 29 H 0.03 0.64 7.44 -2.38 -0.02 0.62 16 30 H 0.35 6.35 8.47 -89.70 -0.76 5.59 16 31 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 32 H 0.06 1.32 7.45 -2.38 -0.02 1.30 16 33 H 0.04 1.44 7.68 -2.39 -0.02 1.42 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 4.06 5.77 -2.38 -0.01 4.05 16 38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 40 H 0.07 3.42 7.85 -2.39 -0.02 3.40 16 41 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.08 3.69 7.48 -2.39 -0.02 3.67 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -59.20 347.90 1.95 -57.25 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.17 Total: 27.36 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 3.63 Total: -42.28 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -2.85 Total: -69.40 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.03 Total: -18.01 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -59.20 1.95 -57.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712754271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.191 kcal (2) G-P(sol) polarization free energy of solvation -59.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds