Wall clock time and date at job start Mon Mar 30 2020 06:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46893 * 109.47214 * 2 1 4 4 C 1.46906 * 111.00133 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47134 * 34.99716 * 4 3 2 6 6 C 1.53005 * 109.46839 * 274.99962 * 4 3 2 7 7 C 1.52999 * 109.46635 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47475 * 60.00096 * 7 6 4 9 9 C 1.53005 * 109.47111 * 299.99612 * 8 7 6 10 10 H 1.08998 * 109.47057 * 299.99949 * 9 8 7 11 11 O 1.42895 * 109.47343 * 179.97438 * 9 8 7 12 12 C 1.42897 * 113.99982 * 90.00084 * 11 9 8 13 13 C 1.53001 * 109.47313 * 180.02562 * 12 11 9 14 14 C 1.50696 * 115.56512 * 39.69087 * 13 12 11 15 15 H 1.08004 * 120.00091 * 260.59057 * 14 13 12 16 16 C 1.37878 * 119.99948 * 80.58783 * 14 13 12 17 17 N 1.31516 * 119.99828 * 1.09035 * 16 14 13 18 18 Si 1.86801 * 120.00008 * 181.09631 * 16 14 13 19 19 H 1.48497 * 109.47057 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47104 * 119.99953 * 18 16 14 21 21 H 1.48499 * 109.47102 * 240.00076 * 18 16 14 22 22 C 1.53003 * 117.49579 * 254.00462 * 13 12 11 23 23 C 1.53003 * 117.49950 * 185.38197 * 13 12 11 24 24 C 1.52995 * 109.47473 * 154.99934 * 4 3 2 25 25 H 1.09001 * 109.47259 * 60.00051 * 1 2 3 26 26 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47261 * 300.00036 * 1 2 3 28 28 H 1.08998 * 109.47143 * 239.99485 * 2 1 3 29 29 H 1.09001 * 109.47259 * 119.99949 * 2 1 3 30 30 H 1.00899 * 111.00586 * 56.04478 * 3 2 1 31 31 H 1.08998 * 109.47057 * 299.99801 * 6 4 3 32 32 H 1.08994 * 109.47087 * 59.99944 * 6 4 3 33 33 H 1.09000 * 109.46827 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47336 * 299.99753 * 7 6 4 35 35 H 1.08998 * 109.47525 * 179.97438 * 8 7 6 36 36 H 1.09005 * 109.47469 * 59.99537 * 8 7 6 37 37 H 1.09003 * 109.47286 * 60.00105 * 12 11 9 38 38 H 1.09003 * 109.47027 * 300.00248 * 12 11 9 39 39 H 0.97003 * 119.99655 * 179.97438 * 17 16 14 40 40 H 1.08998 * 117.49987 * 359.97438 * 22 13 12 41 41 H 1.08992 * 117.49830 * 145.02350 * 22 13 12 42 42 H 1.08995 * 117.50236 * 214.97905 * 23 13 12 43 43 H 1.08999 * 117.49729 * 0.02562 * 23 13 12 44 44 H 1.08998 * 109.47119 * 59.99772 * 24 4 3 45 45 H 1.09000 * 109.47106 * 300.00093 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4882 1.4241 0.0006 5 1 3.8741 0.5922 -0.5885 6 6 4.0007 1.3123 1.4379 7 6 5.5301 1.3525 1.4385 8 6 6.0059 2.6725 0.8287 9 6 5.4934 2.7844 -0.6087 10 1 5.8790 1.9522 -1.1977 11 8 5.9372 4.0175 -1.1781 12 6 7.1999 3.9303 -1.8414 13 6 7.5739 5.3011 -2.4087 14 6 7.2466 6.4802 -1.5291 15 1 6.3550 7.0609 -1.7140 16 6 8.0855 6.8176 -0.4881 17 7 9.1822 6.1235 -0.2761 18 14 7.6640 8.2603 0.6210 19 1 6.3867 8.8717 0.1740 20 1 7.5223 7.7840 2.0204 21 1 8.7482 9.2725 0.5501 22 6 7.4578 5.4950 -3.9219 23 6 8.8369 5.3896 -3.2676 24 6 3.9634 2.7444 -0.6090 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6442 1.9013 0.7813 31 1 3.6148 2.1442 2.0270 32 1 3.6621 0.3717 1.8722 33 1 5.8953 1.2723 2.4623 34 1 5.9157 0.5203 0.8495 35 1 7.0955 2.7013 0.8294 36 1 5.6204 3.5048 1.4176 37 1 7.1345 3.2062 -2.6535 38 1 7.9624 3.6112 -1.1307 39 1 9.7726 6.3611 0.4560 40 1 7.1155 4.6458 -4.5133 41 1 7.1449 6.4752 -4.2812 42 1 9.4312 6.3006 -3.1965 43 1 9.4012 4.4711 -3.4289 44 1 3.5775 3.5764 -0.0199 45 1 3.5983 2.8241 -1.6329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712754274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:28 Heat of formation + Delta-G solvation = -43.731631 kcal Electronic energy + Delta-G solvation = -21199.272900 eV Core-core repulsion = 18216.505969 eV Total energy + Delta-G solvation = -2982.766931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.14483 -37.20450 -35.86059 -34.38539 -31.80500 -31.07204 -29.65150 -27.32876 -25.96231 -24.88567 -22.48992 -22.08453 -21.36072 -21.01845 -19.78460 -18.97800 -16.39166 -15.97089 -15.59616 -14.93026 -14.79757 -14.63962 -14.28173 -14.07361 -13.84498 -13.46328 -13.25422 -12.89498 -12.43059 -12.27081 -12.10125 -11.93087 -11.57045 -11.40220 -11.35309 -11.04234 -10.88507 -10.83525 -10.71359 -10.50713 -10.32335 -10.30834 -10.09553 -9.96243 -9.34491 -8.85826 -8.58419 -8.43835 -8.29819 -7.91559 -5.91424 -3.92887 3.36114 3.43730 3.49566 3.95173 4.50046 4.56602 4.78189 4.90558 5.04171 5.09282 5.12873 5.32522 5.35592 5.40401 5.43078 5.46057 5.57654 5.62090 5.69206 5.73311 5.77315 5.81786 5.97044 6.07670 6.08110 6.15238 6.25318 6.34220 6.40186 6.43960 6.50018 6.62673 6.72154 6.78972 6.80831 6.97254 7.00732 7.13229 7.31164 7.47225 7.54393 8.01375 8.31660 8.62247 9.05638 9.70452 11.18839 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021662 B = 0.004593 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.289859 B = 6095.086872 C = 6511.937612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.685 5.685 4 C 0.092 3.908 5 H 0.075 0.925 6 C -0.147 4.147 7 C -0.111 4.111 8 C -0.141 4.141 9 C 0.091 3.909 10 H 0.045 0.955 11 O -0.351 6.351 12 C 0.111 3.889 13 C 0.045 3.955 14 C -0.468 4.468 15 H 0.059 0.941 16 C 0.069 3.931 17 N -0.887 5.887 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.287 1.287 22 C -0.211 4.211 23 C -0.155 4.155 24 C -0.100 4.100 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.340 0.660 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.012 0.988 38 H 0.046 0.954 39 H 0.256 0.744 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 -12.696 2.506 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.316 5.316 4 C -0.018 4.018 5 H 0.093 0.907 6 C -0.186 4.186 7 C -0.150 4.150 8 C -0.178 4.178 9 C 0.031 3.969 10 H 0.063 0.937 11 O -0.269 6.269 12 C 0.035 3.965 13 C 0.045 3.955 14 C -0.506 4.506 15 H 0.077 0.923 16 C -0.132 4.132 17 N -0.525 5.525 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.213 1.213 22 C -0.248 4.248 23 C -0.193 4.193 24 C -0.138 4.138 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.797 -12.465 1.944 16.605 hybrid contribution 0.357 0.174 1.669 1.715 sum -10.440 -12.291 3.612 16.526 Atomic orbital electron populations 1.21771 0.95140 1.01490 1.02432 1.21933 0.95482 0.89870 1.00303 1.60577 1.07759 1.13145 1.50087 1.21533 0.86665 0.98638 0.94949 0.90707 1.22273 0.97127 1.01305 0.97923 1.21417 0.94653 0.98171 1.00737 1.22034 1.01532 0.96940 0.97329 1.21857 0.93705 0.88428 0.92901 0.93700 1.88086 1.37195 1.28937 1.72711 1.22046 0.84380 0.96850 0.93252 1.18758 0.96408 0.93069 0.87274 1.20321 1.07645 1.10523 1.12124 0.92271 1.24909 0.94852 0.96376 0.97094 1.70008 1.12230 1.39811 1.30472 0.86589 0.78328 0.82651 0.80753 1.19726 1.21154 1.21313 1.23050 1.02523 1.00289 0.98983 1.22536 0.90385 1.00594 1.05787 1.21483 0.94008 0.96360 1.01980 0.91756 0.92409 0.92925 0.91165 0.95513 0.84146 0.91622 0.92643 0.92085 0.92296 0.91439 0.91191 0.96978 0.93584 0.93438 0.91776 0.90419 0.89797 0.92068 0.91184 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.17 37.16 0.38 -0.81 16 2 C 0.05 0.49 6.20 -3.83 -0.02 0.47 16 3 N -0.69 -7.58 6.25 -106.73 -0.67 -8.25 16 4 C 0.09 1.12 2.47 -67.71 -0.17 0.96 16 5 H 0.07 0.91 7.80 -51.93 -0.41 0.51 16 6 C -0.15 -1.68 5.17 -26.73 -0.14 -1.82 16 7 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 8 C -0.14 -2.34 5.54 -26.73 -0.15 -2.49 16 9 C 0.09 1.60 2.61 -26.70 -0.07 1.53 16 10 H 0.04 0.75 7.79 -51.93 -0.40 0.35 16 11 O -0.35 -8.01 9.37 -35.23 -0.33 -8.34 16 12 C 0.11 2.61 5.82 37.16 0.22 2.83 16 13 C 0.05 1.16 1.75 -155.66 -0.27 0.89 16 14 C -0.47 -13.21 8.21 -34.44 -0.28 -13.50 16 15 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 16 C 0.07 1.94 5.44 -17.82 -0.10 1.85 16 17 N -0.89 -25.47 12.94 55.43 0.72 -24.75 16 18 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 C -0.21 -4.79 9.88 -26.73 -0.26 -5.05 16 23 C -0.16 -3.72 9.53 -26.73 -0.25 -3.97 16 24 C -0.10 -1.54 5.18 -26.71 -0.14 -1.67 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 29 H 0.03 0.24 7.43 -51.93 -0.39 -0.15 16 30 H 0.34 3.50 8.47 -39.29 -0.33 3.17 16 31 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 32 H 0.05 0.56 7.45 -51.93 -0.39 0.18 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.24 7.87 -51.93 -0.41 0.83 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.01 0.26 7.89 -51.93 -0.41 -0.15 16 38 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 40 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 41 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -29.17 355.84 -9.96 -39.12 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.60 Total: 2.42 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.42 Total: -22.39 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.05 Total: -33.00 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.33 Total: -8.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.17 -9.96 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712754274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.609 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds