Wall clock time and date at job start Mon Mar 30 2020 06:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46893 * 109.47214 * 2 1 4 4 C 1.46906 * 111.00133 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47134 * 34.99716 * 4 3 2 6 6 C 1.53005 * 109.46839 * 274.99962 * 4 3 2 7 7 C 1.52999 * 109.46635 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47475 * 60.00096 * 7 6 4 9 9 C 1.53005 * 109.47111 * 299.99612 * 8 7 6 10 10 H 1.08998 * 109.47057 * 299.99949 * 9 8 7 11 11 O 1.42895 * 109.47343 * 179.97438 * 9 8 7 12 12 C 1.42897 * 113.99982 * 90.00084 * 11 9 8 13 13 C 1.53001 * 109.47313 * 180.02562 * 12 11 9 14 14 C 1.50696 * 115.56512 * 39.69087 * 13 12 11 15 15 H 1.08004 * 120.00091 * 260.59057 * 14 13 12 16 16 C 1.37878 * 119.99948 * 80.58783 * 14 13 12 17 17 N 1.31516 * 119.99828 * 1.09035 * 16 14 13 18 18 Si 1.86801 * 120.00008 * 181.09631 * 16 14 13 19 19 H 1.48497 * 109.47057 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47104 * 119.99953 * 18 16 14 21 21 H 1.48499 * 109.47102 * 240.00076 * 18 16 14 22 22 C 1.53003 * 117.49579 * 254.00462 * 13 12 11 23 23 C 1.53003 * 117.49950 * 185.38197 * 13 12 11 24 24 C 1.52995 * 109.47473 * 154.99934 * 4 3 2 25 25 H 1.09001 * 109.47259 * 60.00051 * 1 2 3 26 26 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47261 * 300.00036 * 1 2 3 28 28 H 1.08998 * 109.47143 * 239.99485 * 2 1 3 29 29 H 1.09001 * 109.47259 * 119.99949 * 2 1 3 30 30 H 1.00899 * 111.00586 * 56.04478 * 3 2 1 31 31 H 1.08998 * 109.47057 * 299.99801 * 6 4 3 32 32 H 1.08994 * 109.47087 * 59.99944 * 6 4 3 33 33 H 1.09000 * 109.46827 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47336 * 299.99753 * 7 6 4 35 35 H 1.08998 * 109.47525 * 179.97438 * 8 7 6 36 36 H 1.09005 * 109.47469 * 59.99537 * 8 7 6 37 37 H 1.09003 * 109.47286 * 60.00105 * 12 11 9 38 38 H 1.09003 * 109.47027 * 300.00248 * 12 11 9 39 39 H 0.97003 * 119.99655 * 179.97438 * 17 16 14 40 40 H 1.08998 * 117.49987 * 359.97438 * 22 13 12 41 41 H 1.08992 * 117.49830 * 145.02350 * 22 13 12 42 42 H 1.08995 * 117.50236 * 214.97905 * 23 13 12 43 43 H 1.08999 * 117.49729 * 0.02562 * 23 13 12 44 44 H 1.08998 * 109.47119 * 59.99772 * 24 4 3 45 45 H 1.09000 * 109.47106 * 300.00093 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4882 1.4241 0.0006 5 1 3.8741 0.5922 -0.5885 6 6 4.0007 1.3123 1.4379 7 6 5.5301 1.3525 1.4385 8 6 6.0059 2.6725 0.8287 9 6 5.4934 2.7844 -0.6087 10 1 5.8790 1.9522 -1.1977 11 8 5.9372 4.0175 -1.1781 12 6 7.1999 3.9303 -1.8414 13 6 7.5739 5.3011 -2.4087 14 6 7.2466 6.4802 -1.5291 15 1 6.3550 7.0609 -1.7140 16 6 8.0855 6.8176 -0.4881 17 7 9.1822 6.1235 -0.2761 18 14 7.6640 8.2603 0.6210 19 1 6.3867 8.8717 0.1740 20 1 7.5223 7.7840 2.0204 21 1 8.7482 9.2725 0.5501 22 6 7.4578 5.4950 -3.9219 23 6 8.8369 5.3896 -3.2676 24 6 3.9634 2.7444 -0.6090 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6442 1.9013 0.7813 31 1 3.6148 2.1442 2.0270 32 1 3.6621 0.3717 1.8722 33 1 5.8953 1.2723 2.4623 34 1 5.9157 0.5203 0.8495 35 1 7.0955 2.7013 0.8294 36 1 5.6204 3.5048 1.4176 37 1 7.1345 3.2062 -2.6535 38 1 7.9624 3.6112 -1.1307 39 1 9.7726 6.3611 0.4560 40 1 7.1155 4.6458 -4.5133 41 1 7.1449 6.4752 -4.2812 42 1 9.4312 6.3006 -3.1965 43 1 9.4012 4.4711 -3.4289 44 1 3.5775 3.5764 -0.0199 45 1 3.5983 2.8241 -1.6329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712754274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:28 Heat of formation + Delta-G solvation = -60.353813 kcal Electronic energy + Delta-G solvation = -21199.993692 eV Core-core repulsion = 18216.505969 eV Total energy + Delta-G solvation = -2983.487723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38239 -38.81096 -37.36344 -35.59000 -33.94454 -32.02099 -30.89557 -28.30355 -27.89276 -26.87281 -23.38765 -23.17406 -22.89356 -22.42191 -21.25460 -20.68738 -18.20950 -17.46377 -16.67946 -16.44784 -16.40848 -15.96852 -15.72760 -15.49889 -15.04865 -14.74118 -14.59409 -14.22419 -13.91813 -13.57465 -13.44593 -13.20459 -12.86484 -12.85572 -12.67615 -12.47472 -12.35222 -12.25172 -12.05801 -12.04111 -11.94415 -11.67032 -11.44848 -11.37831 -11.19728 -10.83698 -10.42274 -10.26709 -9.80448 -9.28876 -8.06142 -6.12926 1.38646 1.40984 1.52238 2.45597 2.80537 3.24509 3.32075 3.53914 3.73251 3.96170 4.02524 4.13298 4.20022 4.28029 4.36772 4.39653 4.44349 4.47112 4.53741 4.56835 4.60063 4.64600 4.68911 4.79757 4.93141 4.95048 5.01268 5.04093 5.08952 5.12477 5.17813 5.20600 5.21951 5.24354 5.36120 5.40337 5.43208 5.59509 5.63377 5.82182 6.13301 6.41582 6.49981 6.74516 6.91029 7.52608 9.03338 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021662 B = 0.004593 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.289859 B = 6095.086872 C = 6511.937612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.695 5.695 4 C 0.102 3.898 5 H 0.081 0.919 6 C -0.140 4.140 7 C -0.104 4.104 8 C -0.136 4.136 9 C 0.084 3.916 10 H 0.057 0.943 11 O -0.381 6.381 12 C 0.124 3.876 13 C 0.008 3.992 14 C -0.484 4.484 15 H 0.042 0.958 16 C 0.027 3.973 17 N -0.910 5.910 18 Si 0.943 3.057 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.279 1.279 22 C -0.188 4.188 23 C -0.154 4.154 24 C -0.092 4.092 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.345 0.655 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.035 0.965 38 H 0.022 0.978 39 H 0.257 0.743 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 -14.273 2.822 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 N -0.326 5.326 4 C -0.008 4.008 5 H 0.099 0.901 6 C -0.178 4.178 7 C -0.142 4.142 8 C -0.174 4.174 9 C 0.025 3.975 10 H 0.075 0.925 11 O -0.300 6.300 12 C 0.047 3.953 13 C 0.008 3.992 14 C -0.522 4.522 15 H 0.060 0.940 16 C -0.172 4.172 17 N -0.549 5.549 18 Si 0.770 3.230 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.205 1.205 22 C -0.225 4.225 23 C -0.192 4.192 24 C -0.130 4.130 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.163 0.837 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.050 -14.046 2.256 18.644 hybrid contribution 0.709 0.665 1.540 1.821 sum -11.341 -13.382 3.796 17.947 Atomic orbital electron populations 1.21743 0.94176 1.02387 1.02157 1.21990 0.96260 0.88638 1.00674 1.60512 1.06852 1.14614 1.50596 1.21363 0.87607 0.96577 0.95265 0.90092 1.22213 0.95784 1.02460 0.97392 1.21376 0.95772 0.95872 1.01188 1.21963 0.99817 0.98760 0.96863 1.22149 0.95212 0.86924 0.93194 0.92527 1.88034 1.36714 1.32059 1.73206 1.21791 0.84204 0.96061 0.93216 1.18954 0.98170 0.93363 0.88718 1.20498 1.07073 1.11499 1.13154 0.93993 1.25527 0.94837 0.98623 0.98233 1.70094 1.12847 1.40979 1.30934 0.85730 0.78166 0.80085 0.79026 1.19663 1.20869 1.20496 1.23063 1.00902 1.01356 0.97221 1.22442 0.90540 1.00368 1.05824 1.21418 0.92138 0.97991 1.01483 0.92708 0.90939 0.92524 0.91361 0.94473 0.83651 0.91937 0.90199 0.90935 0.91010 0.93960 0.93238 0.94710 0.95978 0.93428 0.88951 0.90520 0.91915 0.90420 0.92669 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.17 71.98 0.73 -1.24 16 2 C 0.05 0.84 6.20 86.30 0.54 1.38 16 3 N -0.69 -13.97 6.25 -491.58 -3.07 -17.04 16 4 C 0.10 2.29 2.47 44.91 0.11 2.40 16 5 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 6 C -0.14 -2.84 5.17 30.60 0.16 -2.69 16 7 C -0.10 -2.47 5.92 30.59 0.18 -2.29 16 8 C -0.14 -4.58 5.54 30.59 0.17 -4.41 16 9 C 0.08 2.96 2.61 30.61 0.08 3.04 16 10 H 0.06 1.85 7.79 -2.39 -0.02 1.84 16 11 O -0.38 -17.71 9.37 -148.98 -1.40 -19.11 16 12 C 0.12 5.86 5.82 71.98 0.42 6.28 16 13 C 0.01 0.43 1.75 -52.93 -0.09 0.33 16 14 C -0.48 -27.89 8.21 25.60 0.21 -27.68 16 15 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 16 C 0.03 1.54 5.44 84.65 0.46 2.00 16 17 N -0.91 -53.17 12.94 21.45 0.28 -52.89 16 18 Si 0.94 45.50 29.54 68.60 2.03 47.52 16 19 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 C -0.19 -8.33 9.88 30.60 0.30 -8.03 16 23 C -0.15 -7.35 9.53 30.60 0.29 -7.06 16 24 C -0.09 -2.78 5.18 30.61 0.16 -2.62 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 1.12 8.06 -2.39 -0.02 1.10 16 29 H 0.04 0.53 7.43 -2.39 -0.02 0.51 16 30 H 0.34 6.43 8.47 -89.69 -0.76 5.67 16 31 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 32 H 0.08 1.31 7.45 -2.39 -0.02 1.29 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.60 7.87 -2.39 -0.02 1.58 16 36 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.03 1.45 7.89 -2.39 -0.02 1.44 16 38 H 0.02 1.12 7.87 -2.39 -0.02 1.11 16 39 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.09 3.54 8.08 -2.39 -0.02 3.52 16 41 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -63.15 355.84 1.72 -61.43 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.17 Total: 20.68 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 3.72 Total: -40.59 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -2.79 Total: -69.93 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.40 Total: -19.11 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -63.15 1.72 -61.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712754274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.077 kcal (2) G-P(sol) polarization free energy of solvation -63.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds