Wall clock time and date at job start Mon Mar 30 2020 06:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47054 * 2 1 4 4 C 1.46901 * 110.99747 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47699 * 324.99828 * 4 3 2 6 6 C 1.53007 * 109.47149 * 85.00074 * 4 3 2 7 7 C 1.53000 * 109.47042 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47337 * 300.00059 * 7 6 4 9 9 C 1.52996 * 109.47125 * 59.99603 * 8 7 6 10 10 H 1.08999 * 109.47211 * 60.00859 * 9 8 7 11 11 O 1.42901 * 109.46957 * 180.02562 * 9 8 7 12 12 C 1.42906 * 113.99938 * 270.00562 * 11 9 8 13 13 C 1.52994 * 109.46922 * 180.02562 * 12 11 9 14 14 C 1.50699 * 115.55140 * 294.88412 * 13 12 11 15 15 H 1.07995 * 120.00315 * 95.16861 * 14 13 12 16 16 C 1.37885 * 119.99577 * 274.89473 * 14 13 12 17 17 N 1.31516 * 120.00344 * 6.39140 * 16 14 13 18 18 Si 1.86801 * 119.99927 * 186.38406 * 16 14 13 19 19 H 1.48503 * 109.47256 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46882 * 120.00011 * 18 16 14 21 21 H 1.48493 * 109.47320 * 240.00249 * 18 16 14 22 22 C 1.53003 * 117.50149 * 80.55417 * 13 12 11 23 23 C 1.53000 * 117.49979 * 149.21341 * 13 12 11 24 24 C 1.52998 * 109.46953 * 204.99499 * 4 3 2 25 25 H 1.08998 * 109.46458 * 60.00377 * 1 2 3 26 26 H 1.09001 * 109.46750 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47072 * 300.00528 * 1 2 3 28 28 H 1.08996 * 109.47810 * 239.99408 * 2 1 3 29 29 H 1.09005 * 109.47082 * 119.99477 * 2 1 3 30 30 H 1.00900 * 111.00066 * 303.94887 * 3 2 1 31 31 H 1.09006 * 109.46748 * 299.99221 * 6 4 3 32 32 H 1.08997 * 109.47021 * 59.99339 * 6 4 3 33 33 H 1.09002 * 109.46897 * 59.99646 * 7 6 4 34 34 H 1.08996 * 109.47037 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46374 * 299.99950 * 8 7 6 36 36 H 1.08995 * 109.47384 * 180.02562 * 8 7 6 37 37 H 1.08995 * 109.47220 * 60.00073 * 12 11 9 38 38 H 1.09003 * 109.46659 * 299.99775 * 12 11 9 39 39 H 0.96995 * 119.99991 * 179.97438 * 17 16 14 40 40 H 1.09001 * 117.49710 * 214.99852 * 22 13 12 41 41 H 1.08996 * 117.50156 * 0.02562 * 22 13 12 42 42 H 1.08999 * 117.49539 * 359.97438 * 23 13 12 43 43 H 1.09005 * 117.50305 * 144.97007 * 23 13 12 44 44 H 1.09006 * 109.47090 * 60.00138 * 24 4 3 45 45 H 1.09000 * 109.47602 * 300.00345 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 0.0006 5 1 3.8736 0.5925 0.5903 6 6 4.0020 1.3119 -1.4362 7 6 5.5314 1.3533 -1.4356 8 6 6.0056 2.6741 -0.8262 9 6 5.4918 2.7865 0.6105 10 1 5.8776 1.9550 1.2005 11 8 5.9343 4.0204 1.1795 12 6 7.1966 3.9345 1.8439 13 6 7.5683 5.3057 2.4116 14 6 7.8136 6.3870 1.3911 15 1 7.0161 7.0616 1.1166 16 6 9.0579 6.5187 0.8118 17 7 9.9936 5.6267 1.0536 18 14 9.4146 7.9640 -0.3166 19 1 8.2048 8.8184 -0.4243 20 1 10.5358 8.7624 0.2410 21 1 9.7871 7.4607 -1.6631 22 6 6.9272 5.7187 3.7381 23 6 8.4087 5.3369 3.6898 24 6 3.9628 2.7448 0.6101 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6442 1.9013 -0.7814 31 1 3.6638 0.3710 -1.8705 32 1 3.6165 2.1435 -2.0259 33 1 5.9171 0.5218 -0.8457 34 1 5.8974 1.2728 -2.4591 35 1 5.6199 3.5055 -1.4161 36 1 7.0952 2.7038 -0.8261 37 1 7.9598 3.6157 1.1341 38 1 7.1310 3.2109 2.6564 39 1 10.8688 5.7192 0.6458 40 1 6.6829 6.7724 3.8725 41 1 6.2408 5.0133 4.2065 42 1 8.6964 4.3805 4.1264 43 1 9.1394 6.1393 3.7923 44 1 3.5968 2.8248 1.6338 45 1 3.5774 3.5765 0.0204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712754276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:32 Heat of formation + Delta-G solvation = -45.619980 kcal Electronic energy + Delta-G solvation = -21069.024972 eV Core-core repulsion = 18086.176156 eV Total energy + Delta-G solvation = -2982.848816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.19074 -37.24948 -35.87152 -34.41419 -31.84822 -31.10233 -29.68892 -27.35965 -26.04797 -24.87964 -22.51804 -22.12718 -21.41863 -20.97974 -19.81887 -18.99862 -16.35321 -16.05662 -15.61832 -15.00612 -14.83641 -14.66289 -14.33992 -14.09547 -13.88407 -13.47962 -13.26260 -12.98343 -12.48749 -12.20690 -12.13850 -11.95492 -11.59704 -11.43147 -11.34856 -11.05837 -10.94677 -10.88212 -10.73007 -10.54436 -10.34435 -10.28768 -10.18441 -9.99243 -9.40309 -8.90508 -8.49452 -8.43691 -8.35161 -8.02220 -5.97370 -3.99731 3.32466 3.40535 3.46236 3.91339 4.45412 4.50214 4.74789 4.88497 4.99977 5.06958 5.09332 5.30297 5.32053 5.33328 5.41048 5.49918 5.56741 5.59836 5.65832 5.69435 5.74302 5.79734 5.95070 6.04163 6.05392 6.13904 6.24339 6.32312 6.40311 6.41894 6.49676 6.58677 6.68428 6.81106 6.82614 6.90269 6.97394 7.14380 7.28511 7.51397 7.59156 7.96532 8.28558 8.55841 9.01248 9.64360 11.12365 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.004227 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.947563 B = 6622.520038 C = 7132.165161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.686 5.686 4 C 0.092 3.908 5 H 0.075 0.925 6 C -0.147 4.147 7 C -0.112 4.112 8 C -0.141 4.141 9 C 0.092 3.908 10 H 0.047 0.953 11 O -0.365 6.365 12 C 0.110 3.890 13 C 0.045 3.955 14 C -0.478 4.478 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.888 3.112 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.206 4.206 23 C -0.154 4.154 24 C -0.100 4.100 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.340 0.660 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.012 0.988 39 H 0.258 0.742 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.612 -11.748 -3.579 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.316 5.316 4 C -0.018 4.018 5 H 0.093 0.907 6 C -0.186 4.186 7 C -0.150 4.150 8 C -0.179 4.179 9 C 0.033 3.967 10 H 0.065 0.935 11 O -0.283 6.283 12 C 0.034 3.966 13 C 0.045 3.955 14 C -0.516 4.516 15 H 0.079 0.921 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.243 4.243 23 C -0.191 4.191 24 C -0.138 4.138 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.159 0.841 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.594 -11.555 -2.938 17.342 hybrid contribution 0.798 0.159 -1.583 1.780 sum -11.796 -11.396 -4.521 17.013 Atomic orbital electron populations 1.21772 0.95125 1.01512 1.02422 1.21938 0.95492 0.89835 1.00334 1.60567 1.07744 1.13192 1.50071 1.21528 0.86685 0.98597 0.94977 0.90666 1.22276 0.97115 1.01340 0.97897 1.21418 0.94647 0.98154 1.00792 1.22043 1.01629 0.97021 0.97239 1.21840 0.93677 0.88283 0.92940 0.93520 1.87992 1.37807 1.29632 1.72907 1.22182 0.83809 0.97076 0.93546 1.18735 0.97407 0.92661 0.86705 1.20439 0.96035 1.13235 1.21896 0.92089 1.24972 0.96281 0.95957 0.96262 1.70016 1.04065 1.34038 1.44161 0.86589 0.78266 0.83008 0.80496 1.19660 1.21092 1.21147 1.22955 0.95416 0.99974 1.05976 1.22527 0.92401 1.00322 1.03880 1.21474 0.93992 0.96412 1.01971 0.92917 0.92391 0.91765 0.95484 0.91151 0.84148 0.92594 0.91627 0.92225 0.92015 0.91192 0.91333 0.92920 0.97012 0.93279 0.90456 0.91674 0.91998 0.89849 0.90974 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.17 37.16 0.38 -0.77 16 2 C 0.05 0.48 6.20 -3.82 -0.02 0.45 16 3 N -0.69 -7.30 6.25 -106.72 -0.67 -7.97 16 4 C 0.09 1.08 2.47 -67.71 -0.17 0.92 16 5 H 0.08 0.90 7.80 -51.93 -0.40 0.49 16 6 C -0.15 -1.62 5.17 -26.73 -0.14 -1.75 16 7 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 8 C -0.14 -2.27 5.54 -26.73 -0.15 -2.42 16 9 C 0.09 1.58 2.61 -26.76 -0.07 1.51 16 10 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 11 O -0.36 -8.10 9.92 -35.23 -0.35 -8.45 16 12 C 0.11 2.60 5.57 37.15 0.21 2.81 16 13 C 0.05 1.16 1.60 -155.66 -0.25 0.91 16 14 C -0.48 -13.48 8.76 -34.44 -0.30 -13.78 16 15 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 16 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 17 N -0.89 -25.25 12.93 55.43 0.72 -24.54 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.21 -4.73 9.96 -26.69 -0.27 -5.00 16 23 C -0.15 -3.70 9.43 -26.69 -0.25 -3.95 16 24 C -0.10 -1.48 5.17 -26.76 -0.14 -1.62 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.03 0.23 7.44 -51.93 -0.39 -0.15 16 29 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 30 H 0.34 3.34 8.47 -39.29 -0.33 3.01 16 31 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 32 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.22 7.87 -51.93 -0.41 0.81 16 37 H 0.05 1.33 7.87 -51.93 -0.41 0.93 16 38 H 0.01 0.26 8.04 -51.93 -0.42 -0.16 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -28.96 356.68 -9.98 -38.94 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.61 Total: 2.57 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -1.42 Total: -22.46 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.05 Total: -32.51 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.35 Total: -8.45 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.96 -9.98 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712754276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.680 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds