Wall clock time and date at job start Mon Mar 30 2020 06:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47054 * 2 1 4 4 C 1.46901 * 110.99747 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47699 * 324.99828 * 4 3 2 6 6 C 1.53007 * 109.47149 * 85.00074 * 4 3 2 7 7 C 1.53000 * 109.47042 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47337 * 300.00059 * 7 6 4 9 9 C 1.52996 * 109.47125 * 59.99603 * 8 7 6 10 10 H 1.08999 * 109.47211 * 60.00859 * 9 8 7 11 11 O 1.42901 * 109.46957 * 180.02562 * 9 8 7 12 12 C 1.42906 * 113.99938 * 270.00562 * 11 9 8 13 13 C 1.52994 * 109.46922 * 180.02562 * 12 11 9 14 14 C 1.50699 * 115.55140 * 294.88412 * 13 12 11 15 15 H 1.07995 * 120.00315 * 95.16861 * 14 13 12 16 16 C 1.37885 * 119.99577 * 274.89473 * 14 13 12 17 17 N 1.31516 * 120.00344 * 6.39140 * 16 14 13 18 18 Si 1.86801 * 119.99927 * 186.38406 * 16 14 13 19 19 H 1.48503 * 109.47256 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46882 * 120.00011 * 18 16 14 21 21 H 1.48493 * 109.47320 * 240.00249 * 18 16 14 22 22 C 1.53003 * 117.50149 * 80.55417 * 13 12 11 23 23 C 1.53000 * 117.49979 * 149.21341 * 13 12 11 24 24 C 1.52998 * 109.46953 * 204.99499 * 4 3 2 25 25 H 1.08998 * 109.46458 * 60.00377 * 1 2 3 26 26 H 1.09001 * 109.46750 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47072 * 300.00528 * 1 2 3 28 28 H 1.08996 * 109.47810 * 239.99408 * 2 1 3 29 29 H 1.09005 * 109.47082 * 119.99477 * 2 1 3 30 30 H 1.00900 * 111.00066 * 303.94887 * 3 2 1 31 31 H 1.09006 * 109.46748 * 299.99221 * 6 4 3 32 32 H 1.08997 * 109.47021 * 59.99339 * 6 4 3 33 33 H 1.09002 * 109.46897 * 59.99646 * 7 6 4 34 34 H 1.08996 * 109.47037 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46374 * 299.99950 * 8 7 6 36 36 H 1.08995 * 109.47384 * 180.02562 * 8 7 6 37 37 H 1.08995 * 109.47220 * 60.00073 * 12 11 9 38 38 H 1.09003 * 109.46659 * 299.99775 * 12 11 9 39 39 H 0.96995 * 119.99991 * 179.97438 * 17 16 14 40 40 H 1.09001 * 117.49710 * 214.99852 * 22 13 12 41 41 H 1.08996 * 117.50156 * 0.02562 * 22 13 12 42 42 H 1.08999 * 117.49539 * 359.97438 * 23 13 12 43 43 H 1.09005 * 117.50305 * 144.97007 * 23 13 12 44 44 H 1.09006 * 109.47090 * 60.00138 * 24 4 3 45 45 H 1.09000 * 109.47602 * 300.00345 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 0.0006 5 1 3.8736 0.5925 0.5903 6 6 4.0020 1.3119 -1.4362 7 6 5.5314 1.3533 -1.4356 8 6 6.0056 2.6741 -0.8262 9 6 5.4918 2.7865 0.6105 10 1 5.8776 1.9550 1.2005 11 8 5.9343 4.0204 1.1795 12 6 7.1966 3.9345 1.8439 13 6 7.5683 5.3057 2.4116 14 6 7.8136 6.3870 1.3911 15 1 7.0161 7.0616 1.1166 16 6 9.0579 6.5187 0.8118 17 7 9.9936 5.6267 1.0536 18 14 9.4146 7.9640 -0.3166 19 1 8.2048 8.8184 -0.4243 20 1 10.5358 8.7624 0.2410 21 1 9.7871 7.4607 -1.6631 22 6 6.9272 5.7187 3.7381 23 6 8.4087 5.3369 3.6898 24 6 3.9628 2.7448 0.6101 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6442 1.9013 -0.7814 31 1 3.6638 0.3710 -1.8705 32 1 3.6165 2.1435 -2.0259 33 1 5.9171 0.5218 -0.8457 34 1 5.8974 1.2728 -2.4591 35 1 5.6199 3.5055 -1.4161 36 1 7.0952 2.7038 -0.8261 37 1 7.9598 3.6157 1.1341 38 1 7.1310 3.2109 2.6564 39 1 10.8688 5.7192 0.6458 40 1 6.6829 6.7724 3.8725 41 1 6.2408 5.0133 4.2065 42 1 8.6964 4.3805 4.1264 43 1 9.1394 6.1393 3.7923 44 1 3.5968 2.8248 1.6338 45 1 3.5774 3.5765 0.0204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712754276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:31 Heat of formation + Delta-G solvation = -62.047345 kcal Electronic energy + Delta-G solvation = -21069.737316 eV Core-core repulsion = 18086.176156 eV Total energy + Delta-G solvation = -2983.561160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40722 -38.84410 -37.37060 -35.59918 -33.97681 -32.02215 -30.90523 -28.29989 -27.99067 -26.86433 -23.41541 -23.17568 -22.89509 -22.41986 -21.26493 -20.70035 -18.18636 -17.53651 -16.70704 -16.44897 -16.43464 -16.02405 -15.73047 -15.51193 -15.05015 -14.74935 -14.61484 -14.23326 -13.91673 -13.58002 -13.39187 -13.26969 -12.91566 -12.82256 -12.67444 -12.47043 -12.36115 -12.22335 -12.08827 -12.04964 -11.95562 -11.68777 -11.46526 -11.39457 -11.26476 -10.80711 -10.43313 -10.22612 -9.93667 -9.28696 -8.10588 -6.19171 1.38542 1.40927 1.52558 2.43340 2.73567 3.18361 3.29387 3.60261 3.73296 3.96252 4.02071 4.12824 4.19685 4.27802 4.35304 4.38414 4.44264 4.47921 4.54315 4.56731 4.58625 4.64928 4.68896 4.81300 4.88313 4.94617 4.99344 5.03413 5.07912 5.12299 5.17733 5.20227 5.21396 5.23728 5.36238 5.40795 5.42567 5.61380 5.65118 5.79167 6.12927 6.41785 6.50903 6.67412 6.84298 7.47475 8.98487 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.004227 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.947563 B = 6622.520038 C = 7132.165161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.694 5.694 4 C 0.101 3.899 5 H 0.078 0.922 6 C -0.139 4.139 7 C -0.105 4.105 8 C -0.138 4.138 9 C 0.085 3.915 10 H 0.054 0.946 11 O -0.389 6.389 12 C 0.125 3.875 13 C 0.011 3.989 14 C -0.498 4.498 15 H 0.044 0.956 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 0.947 3.053 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.280 1.280 22 C -0.185 4.185 23 C -0.151 4.151 24 C -0.091 4.091 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.346 0.654 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.024 0.976 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 -12.969 -4.162 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.325 5.325 4 C -0.009 4.009 5 H 0.097 0.903 6 C -0.178 4.178 7 C -0.143 4.143 8 C -0.176 4.176 9 C 0.026 3.974 10 H 0.072 0.928 11 O -0.308 6.308 12 C 0.049 3.951 13 C 0.010 3.990 14 C -0.536 4.536 15 H 0.062 0.938 16 C -0.175 4.175 17 N -0.546 5.546 18 Si 0.773 3.227 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.206 1.206 22 C -0.223 4.223 23 C -0.189 4.189 24 C -0.130 4.130 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.164 0.836 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.854 -12.782 -3.522 19.176 hybrid contribution 1.141 0.531 -1.389 1.874 sum -12.713 -12.251 -4.910 18.325 Atomic orbital electron populations 1.21742 0.94147 1.02371 1.02189 1.21990 0.96277 0.88683 1.00631 1.60499 1.06810 1.14575 1.50617 1.21359 0.87636 0.96556 0.95316 0.90329 1.22214 0.95696 1.02554 0.97349 1.21380 0.95838 0.95848 1.01233 1.21981 0.99874 0.99001 0.96719 1.22142 0.95327 0.86626 0.93289 0.92821 1.87945 1.36953 1.32628 1.73310 1.21836 0.83804 0.96215 0.93277 1.18908 0.99557 0.93281 0.87236 1.20615 0.95953 1.13980 1.23082 0.93804 1.25620 0.96065 0.98191 0.97574 1.70100 1.04289 1.35218 1.44977 0.85674 0.78070 0.80124 0.78820 1.19597 1.20311 1.20637 1.22952 0.95024 1.00498 1.03786 1.22448 0.92678 1.00499 1.03251 1.21402 0.91919 0.98099 1.01552 0.92442 0.91006 0.92702 0.94481 0.91476 0.83554 0.90289 0.91640 0.91304 0.90786 0.92568 0.93967 0.95729 0.95305 0.93141 0.90524 0.89348 0.90364 0.91752 0.91964 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.17 71.98 0.73 -1.16 16 2 C 0.05 0.81 6.20 86.30 0.54 1.35 16 3 N -0.69 -13.35 6.25 -491.55 -3.07 -16.42 16 4 C 0.10 2.20 2.47 44.92 0.11 2.31 16 5 H 0.08 1.69 7.80 -2.39 -0.02 1.67 16 6 C -0.14 -2.70 5.17 30.60 0.16 -2.55 16 7 C -0.10 -2.41 5.92 30.59 0.18 -2.23 16 8 C -0.14 -4.47 5.54 30.59 0.17 -4.30 16 9 C 0.08 2.92 2.61 30.58 0.08 3.00 16 10 H 0.05 1.77 7.79 -2.39 -0.02 1.75 16 11 O -0.39 -17.60 9.92 -148.98 -1.48 -19.07 16 12 C 0.13 6.00 5.57 71.98 0.40 6.40 16 13 C 0.01 0.55 1.60 -52.93 -0.08 0.46 16 14 C -0.50 -28.70 8.76 25.60 0.22 -28.48 16 15 H 0.04 2.60 7.82 -2.91 -0.02 2.57 16 16 C 0.03 1.43 5.39 84.66 0.46 1.88 16 17 N -0.91 -52.54 12.93 21.45 0.28 -52.26 16 18 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C -0.19 -8.39 9.96 30.62 0.30 -8.09 16 23 C -0.15 -7.27 9.43 30.62 0.29 -6.98 16 24 C -0.09 -2.65 5.17 30.58 0.16 -2.49 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.04 0.51 7.44 -2.39 -0.02 0.49 16 29 H 0.07 1.08 8.06 -2.38 -0.02 1.06 16 30 H 0.35 6.05 8.47 -89.69 -0.76 5.29 16 31 H 0.08 1.24 7.45 -2.38 -0.02 1.22 16 32 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.56 7.87 -2.39 -0.02 1.54 16 37 H 0.02 1.29 7.87 -2.39 -0.02 1.27 16 38 H 0.03 1.26 8.04 -2.39 -0.02 1.24 16 39 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 42 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 43 H 0.06 3.30 8.14 -2.38 -0.02 3.28 16 44 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -62.40 356.68 1.64 -60.76 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.17 Total: 21.09 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 3.72 Total: -40.88 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -2.79 Total: -68.68 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.48 Total: -19.07 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -62.40 1.64 -60.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712754276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.287 kcal (2) G-P(sol) polarization free energy of solvation -62.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds