Wall clock time and date at job start Mon Mar 30 2020 06:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47324 * 2 1 4 4 C 1.46896 * 111.00267 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46792 * 324.99412 * 4 3 2 6 6 C 1.52995 * 109.47375 * 84.99970 * 4 3 2 7 7 C 1.52997 * 109.47230 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47161 * 300.00044 * 7 6 4 9 9 C 1.52995 * 109.47085 * 59.99867 * 8 7 6 10 10 H 1.09000 * 109.46805 * 179.97438 * 9 8 7 11 11 O 1.42904 * 109.47381 * 60.00266 * 9 8 7 12 12 C 1.42901 * 113.99989 * 88.18428 * 11 9 8 13 13 C 1.52996 * 109.47071 * 184.28743 * 12 11 9 14 14 C 1.50704 * 115.55307 * 304.85547 * 13 12 11 15 15 H 1.08000 * 120.00077 * 95.21114 * 14 13 12 16 16 C 1.37875 * 119.99929 * 275.22017 * 14 13 12 17 17 N 1.31517 * 120.00289 * 7.51131 * 16 14 13 18 18 Si 1.86803 * 120.00179 * 187.24408 * 16 14 13 19 19 H 1.48503 * 109.46558 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47510 * 119.99270 * 18 16 14 21 21 H 1.48500 * 109.47170 * 239.99902 * 18 16 14 22 22 C 1.53000 * 117.49807 * 90.52198 * 13 12 11 23 23 C 1.52998 * 117.50210 * 159.18425 * 13 12 11 24 24 C 1.52997 * 109.47230 * 300.00090 * 9 8 7 25 25 H 1.09003 * 109.46872 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47183 * 300.00039 * 1 2 3 27 27 H 1.09000 * 109.47181 * 59.99953 * 1 2 3 28 28 H 1.09000 * 109.47183 * 239.99960 * 2 1 3 29 29 H 1.08997 * 109.47656 * 119.99898 * 2 1 3 30 30 H 1.00899 * 110.99873 * 303.95401 * 3 2 1 31 31 H 1.08999 * 109.47616 * 59.99946 * 6 4 3 32 32 H 1.09008 * 109.47004 * 299.99903 * 6 4 3 33 33 H 1.08997 * 109.47435 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47393 * 60.00011 * 7 6 4 35 35 H 1.08999 * 109.46821 * 299.99469 * 8 7 6 36 36 H 1.09002 * 109.46664 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.46788 * 64.28943 * 12 11 9 38 38 H 1.08999 * 109.47640 * 304.29040 * 12 11 9 39 39 H 0.97003 * 119.99538 * 5.68677 * 17 16 14 40 40 H 1.08999 * 117.50130 * 214.99840 * 22 13 12 41 41 H 1.08996 * 117.49628 * 0.02615 * 22 13 12 42 42 H 1.09000 * 117.49527 * 359.97438 * 23 13 12 43 43 H 1.08993 * 117.50203 * 144.97112 * 23 13 12 44 44 H 1.09003 * 109.47015 * 180.02562 * 24 9 8 45 45 H 1.09004 * 109.46905 * 300.00006 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8740 0.5924 0.5886 6 6 4.0008 1.3124 -1.4378 7 6 5.5302 1.3538 -1.4384 8 6 6.0048 2.6745 -0.8290 9 6 5.4922 2.7864 0.6082 10 1 5.8307 3.7271 1.0424 11 8 5.9986 1.6961 1.3808 12 6 7.2710 1.9497 1.9797 13 6 7.7619 0.6860 2.6887 14 6 6.8178 0.1050 3.7097 15 1 6.1419 -0.6894 3.4297 16 6 6.8168 0.5879 5.0011 17 7 7.5299 1.6499 5.3067 18 14 5.7968 -0.2619 6.3153 19 1 5.0859 -1.4206 5.7176 20 1 6.6881 -0.7356 7.4044 21 1 4.8052 0.6953 6.8681 22 6 8.6155 -0.2920 1.8789 23 6 9.2619 0.5693 2.9668 24 6 3.9628 2.7449 0.6088 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6442 1.9013 -0.7814 31 1 3.6149 2.1442 -2.0270 32 1 3.6622 0.3716 -1.8721 33 1 5.8954 1.2737 -2.4623 34 1 5.9165 0.5222 -0.8492 35 1 5.6186 3.5062 -1.4184 36 1 7.0944 2.7038 -0.8291 37 1 7.1770 2.7592 2.7036 38 1 7.9859 2.2341 1.2076 39 1 7.9903 2.1421 4.6090 40 1 8.4943 -1.3555 2.0846 41 1 8.8277 -0.0349 0.8412 42 1 9.8991 1.3928 2.6442 43 1 9.5658 0.0729 3.8883 44 1 3.5976 2.8251 1.6327 45 1 3.5765 3.5766 0.0195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712754279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:35 Heat of formation + Delta-G solvation = -47.796152 kcal Electronic energy + Delta-G solvation = -21695.320080 eV Core-core repulsion = 18712.376898 eV Total energy + Delta-G solvation = -2982.943182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.24857 -37.27721 -35.96642 -34.16098 -31.79328 -30.96713 -29.83523 -27.30959 -25.95650 -24.61718 -22.43042 -22.13954 -21.43806 -21.21467 -19.38536 -19.31426 -16.75639 -15.94900 -15.51272 -15.31032 -14.73896 -14.66072 -14.29366 -13.67976 -13.64987 -13.40704 -13.13280 -12.81013 -12.48480 -12.43534 -11.99592 -11.81120 -11.77420 -11.57170 -11.38024 -11.13842 -10.86561 -10.74482 -10.67443 -10.50201 -10.40344 -10.19927 -10.05585 -9.78931 -9.49109 -8.84309 -8.39396 -8.33901 -8.24746 -8.20762 -6.24522 -3.95981 3.49711 3.53230 3.67302 4.22066 4.35745 4.60141 4.92713 4.97642 5.09885 5.13815 5.25278 5.26422 5.39888 5.41854 5.47773 5.52269 5.65001 5.71388 5.75814 5.78821 5.82036 5.94591 5.98635 6.05290 6.11951 6.13497 6.19141 6.22793 6.33824 6.34802 6.38622 6.47456 6.59256 6.63650 6.64579 6.68778 6.89674 7.19218 7.29083 7.29939 7.52595 8.14508 8.39140 8.55790 8.97761 9.75598 11.13289 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.006422 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.277059 B = 4358.704938 C = 5516.966371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 N -0.686 5.686 4 C 0.091 3.909 5 H 0.093 0.907 6 C -0.142 4.142 7 C -0.108 4.108 8 C -0.139 4.139 9 C 0.084 3.916 10 H 0.052 0.948 11 O -0.350 6.350 12 C 0.105 3.895 13 C 0.024 3.976 14 C -0.551 4.551 15 H 0.053 0.947 16 C 0.025 3.975 17 N -0.911 5.911 18 Si 1.068 2.932 19 H -0.289 1.289 20 H -0.288 1.288 21 H -0.289 1.289 22 C -0.192 4.192 23 C -0.175 4.175 24 C -0.096 4.096 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.333 0.667 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.014 0.986 39 H 0.271 0.729 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 1.152 -13.307 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.316 5.316 4 C -0.018 4.018 5 H 0.111 0.889 6 C -0.181 4.181 7 C -0.147 4.147 8 C -0.177 4.177 9 C 0.025 3.975 10 H 0.070 0.930 11 O -0.268 6.268 12 C 0.028 3.972 13 C 0.024 3.976 14 C -0.589 4.589 15 H 0.071 0.929 16 C -0.179 4.179 17 N -0.547 5.547 18 Si 0.897 3.103 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.229 4.229 23 C -0.213 4.213 24 C -0.134 4.134 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.150 0.850 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.234 1.043 -10.957 13.746 hybrid contribution 0.841 0.071 -2.727 2.855 sum -7.392 1.115 -13.685 15.594 Atomic orbital electron populations 1.21767 0.95359 1.01446 1.02096 1.21941 0.95173 0.89868 1.00683 1.60619 1.08273 1.13342 1.49319 1.21530 0.85856 0.99787 0.94655 0.88880 1.22204 0.97010 1.00783 0.98082 1.21320 0.94781 0.98758 0.99801 1.22027 1.00691 0.97812 0.97194 1.21965 0.93911 0.91075 0.90536 0.92989 1.88056 1.35699 1.36875 1.66195 1.22194 0.83357 0.98547 0.93101 1.19024 0.89702 0.92432 0.96490 1.21220 1.21404 1.21294 0.94966 0.92891 1.25712 0.97363 0.96216 0.98628 1.70689 1.30166 1.16583 1.37235 0.83564 0.75891 0.75446 0.75361 1.21532 1.21465 1.21523 1.22858 1.08398 0.97502 0.94184 1.22752 0.97513 1.01573 0.99442 1.21494 0.93193 0.96603 1.02101 0.92432 0.91825 0.93220 0.95621 0.90680 0.85007 0.92582 0.92708 0.92944 0.90680 0.92010 0.92186 0.94082 0.96771 0.91810 0.90206 0.91648 0.91734 0.89536 0.90546 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.17 37.16 0.38 -1.11 16 2 C 0.05 0.64 6.20 -3.82 -0.02 0.61 16 3 N -0.69 -8.92 6.25 -106.73 -0.67 -9.58 16 4 C 0.09 1.34 2.32 -67.72 -0.16 1.18 16 5 H 0.09 1.69 7.34 -51.93 -0.38 1.31 16 6 C -0.14 -1.79 5.17 -26.74 -0.14 -1.93 16 7 C -0.11 -1.50 5.78 -26.73 -0.15 -1.66 16 8 C -0.14 -1.98 5.59 -26.73 -0.15 -2.13 16 9 C 0.08 1.42 2.91 -26.74 -0.08 1.34 16 10 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 11 O -0.35 -7.50 8.38 -35.23 -0.30 -7.79 16 12 C 0.10 2.38 5.51 37.16 0.20 2.59 16 13 C 0.02 0.60 1.19 -155.66 -0.19 0.42 16 14 C -0.55 -15.58 8.57 -34.44 -0.30 -15.88 16 15 H 0.05 1.55 7.82 -52.49 -0.41 1.14 16 16 C 0.03 0.72 5.38 -17.82 -0.10 0.62 16 17 N -0.91 -27.14 13.46 55.43 0.75 -26.40 16 18 Si 1.07 25.76 29.91 -169.99 -5.08 20.67 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.19 -4.29 9.93 -26.69 -0.26 -4.56 16 23 C -0.18 -4.10 9.01 -26.69 -0.24 -4.34 16 24 C -0.10 -1.47 5.27 -26.73 -0.14 -1.61 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.30 7.44 -51.93 -0.39 -0.09 16 29 H 0.07 1.03 8.06 -51.93 -0.42 0.62 16 30 H 0.33 3.71 8.47 -39.29 -0.33 3.37 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.05 0.67 7.45 -51.92 -0.39 0.28 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.23 7.68 -51.93 -0.40 0.83 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.88 7.67 -51.93 -0.40 0.48 16 37 H 0.04 1.00 7.40 -51.93 -0.38 0.62 16 38 H 0.01 0.29 7.60 -51.93 -0.39 -0.10 16 39 H 0.27 7.98 6.12 -40.82 -0.25 7.73 16 40 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -29.64 350.92 -9.77 -39.41 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -8.42 Total: 4.85 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -1.34 Total: -26.45 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.08 Total: -35.98 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.30 Total: -7.79 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.64 -9.77 -39.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712754279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.390 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds