Wall clock time and date at job start Mon Mar 30 2020 08:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00460 * 2 1 4 4 H 1.09008 * 112.94534 * 341.41318 * 3 2 1 5 5 C 1.53950 * 113.66333 * 112.81106 * 3 2 1 6 6 C 1.53950 * 87.29557 * 139.21262 * 5 3 2 7 7 H 1.08998 * 113.74962 * 89.74670 * 6 5 3 8 8 N 1.46898 * 113.66402 * 220.80007 * 6 5 3 9 9 C 1.46899 * 110.99656 * 252.18477 * 8 6 5 10 10 C 1.53003 * 109.47040 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47120 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47120 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47042 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00032 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99612 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99803 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00495 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46669 * 90.00093 * 17 15 13 19 19 H 1.48495 * 109.47198 * 209.99896 * 17 15 13 20 20 H 1.48503 * 109.47117 * 330.00561 * 17 15 13 21 21 C 1.52906 * 86.78208 * 335.26769 * 6 5 3 22 22 C 1.52913 * 121.13846 * 150.61759 * 21 6 5 23 23 C 1.53952 * 86.78179 * 100.82243 * 22 21 6 24 24 C 1.53068 * 121.06931 * 259.16126 * 21 6 5 25 25 H 1.08998 * 109.47325 * 59.99715 * 1 2 3 26 26 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46964 * 299.99390 * 1 2 3 28 28 H 1.09000 * 113.58006 * 24.60912 * 5 3 2 29 29 H 1.08999 * 113.65202 * 253.82637 * 5 3 2 30 30 H 1.00894 * 111.00017 * 16.13215 * 8 6 5 31 31 H 1.08997 * 109.47389 * 299.99569 * 9 8 6 32 32 H 1.09000 * 109.47736 * 60.00133 * 9 8 6 33 33 H 1.08995 * 109.47370 * 299.99549 * 10 9 8 34 34 H 1.08997 * 109.47117 * 60.00139 * 10 9 8 35 35 H 1.08993 * 109.47238 * 300.00357 * 11 10 9 36 36 H 1.08997 * 109.46860 * 60.00169 * 11 10 9 37 37 H 1.08997 * 109.46857 * 300.00301 * 12 11 10 38 38 H 1.08992 * 109.46773 * 60.00023 * 12 11 10 39 39 H 0.97004 * 120.00108 * 180.02562 * 16 15 13 40 40 H 1.09000 * 113.66161 * 346.35132 * 22 21 6 41 41 H 1.09002 * 113.66537 * 215.28969 * 22 21 6 42 42 H 1.09002 * 113.58142 * 139.33940 * 23 22 21 43 43 H 1.09004 * 113.57653 * 270.05541 * 23 22 21 44 44 H 1.09006 * 113.66752 * 144.67391 * 24 21 6 45 45 H 1.09001 * 113.71350 * 13.57398 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3140 2.0807 -0.3200 5 6 2.7610 1.6474 1.2998 6 6 3.8398 2.3025 0.4182 7 1 3.6593 3.3580 0.2150 8 7 5.2121 2.0339 0.8683 9 6 5.8165 3.2349 1.4602 10 6 7.2417 2.9165 1.9167 11 6 7.8714 4.1675 2.5326 12 6 9.2969 3.8493 2.9884 13 6 9.9169 5.0814 3.5957 14 1 9.3507 5.9994 3.6513 15 6 11.2069 5.0365 4.0801 16 7 11.7478 6.1116 4.6105 17 14 12.1860 3.4485 3.9846 18 1 12.9311 3.4030 2.7008 19 1 13.1456 3.3898 5.1163 20 1 11.2595 2.2905 4.0605 21 6 3.3679 1.3728 -0.7002 22 6 3.4804 1.7824 -2.1692 23 6 4.7330 0.8896 -2.2322 24 6 4.1433 0.1001 -1.0495 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.1146 0.7709 1.8426 29 1 2.2309 2.3545 1.9378 30 1 5.2354 1.2607 1.5161 31 1 5.8421 4.0324 0.7177 32 1 5.2240 3.5552 2.3172 33 1 7.2158 2.1192 2.6594 34 1 7.8345 2.5960 1.0600 35 1 7.8973 4.9646 1.7897 36 1 7.2787 4.4884 3.3892 37 1 9.2713 3.0521 3.7312 38 1 9.8892 3.5287 2.1316 39 1 12.6556 6.0802 4.9511 40 1 3.6908 2.8422 -2.3129 41 1 2.6569 1.4249 -2.7874 42 1 4.8080 0.3077 -3.1509 43 1 5.6561 1.4156 -1.9884 44 1 3.5064 -0.7311 -1.3524 45 1 4.8826 -0.1823 -0.3000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713490862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:38:11 Heat of formation + Delta-G solvation = -20.441372 kcal Electronic energy + Delta-G solvation = -20387.536141 eV Core-core repulsion = 17405.779152 eV Total energy + Delta-G solvation = -2981.756990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.93346 -37.33385 -36.36332 -34.65412 -33.08939 -31.66038 -28.56755 -27.06280 -25.84633 -24.73222 -24.64154 -22.86957 -21.37290 -21.04348 -20.00482 -18.25888 -16.96052 -16.59282 -16.28541 -15.76614 -15.54674 -15.07171 -14.80554 -14.24674 -14.04436 -13.77769 -13.08264 -13.03343 -12.60459 -12.45304 -12.31723 -12.24523 -11.96350 -11.85726 -11.69308 -11.32604 -11.24985 -11.15539 -10.77819 -10.60420 -10.45863 -10.41606 -10.22060 -9.84650 -9.65093 -9.46819 -9.42884 -9.11814 -8.49889 -8.33223 -6.00640 -3.98149 3.34143 3.41080 3.43760 3.45780 4.14579 4.25744 4.34682 4.45393 4.49134 4.63619 4.72354 4.85458 4.92269 5.05452 5.10598 5.22498 5.31960 5.33317 5.37067 5.42337 5.49928 5.52839 5.62489 5.70688 5.77048 5.82532 5.85326 5.92533 6.08633 6.10705 6.17868 6.36003 6.40854 6.46879 6.69836 6.79820 6.94187 6.96861 7.13420 7.37272 7.39036 7.50810 7.84783 8.58692 9.04645 9.62486 11.12990 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035103 B = 0.002940 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.470429 B = 9523.139514 C = 9761.505121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.073 3.927 4 H 0.085 0.915 5 C -0.181 4.181 6 C 0.094 3.906 7 H 0.099 0.901 8 N -0.672 5.672 9 C 0.059 3.941 10 C -0.118 4.118 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.092 4.092 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.097 4.097 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.342 0.658 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.014 0.986 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.918 -12.164 -12.054 28.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.014 3.986 4 H 0.103 0.897 5 C -0.221 4.221 6 C -0.017 4.017 7 H 0.117 0.883 8 N -0.302 5.302 9 C -0.069 4.069 10 C -0.156 4.156 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.088 0.912 15 C -0.137 4.137 16 N -0.545 5.545 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.093 4.093 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.134 4.134 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.346 -12.150 -12.580 28.376 hybrid contribution -0.164 -0.380 0.944 1.031 sum -22.510 -12.531 -11.635 28.268 Atomic orbital electron populations 1.22772 0.81631 1.02563 0.99749 1.87943 1.19118 1.27286 1.94523 1.23402 0.93634 0.85006 0.96516 0.89679 1.24182 0.99129 1.01320 0.97451 1.22430 0.87108 0.97934 0.94251 0.88345 1.60348 1.16942 1.08046 1.44819 1.22094 0.95565 0.92026 0.97224 1.21670 0.94160 0.99396 1.00410 1.21410 0.97834 0.95451 0.99202 1.19568 0.92348 0.97390 0.95833 1.21194 0.98877 0.97053 1.38620 0.91159 1.25054 0.97672 0.96195 0.94759 1.69925 1.15040 1.28397 1.41181 0.86753 0.80009 0.84688 0.77685 1.20305 1.21482 1.18994 1.23025 0.93537 0.98548 0.94172 1.22723 0.98601 0.99956 0.95164 1.22762 0.97942 0.98287 0.97986 1.22299 0.98194 0.94881 0.98050 0.94201 0.89844 0.94223 0.89033 0.91395 0.83854 0.91178 0.95407 0.92786 0.91661 0.92880 0.93096 0.96797 0.97085 0.92819 0.91571 0.90542 0.92309 0.89384 0.90221 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.30 16 2 O -0.37 -3.68 10.03 -35.23 -0.35 -4.04 16 3 C 0.07 0.66 4.19 -26.28 -0.11 0.55 16 4 H 0.09 0.67 7.87 -51.92 -0.41 0.26 16 5 C -0.18 -1.70 7.54 -25.75 -0.19 -1.89 16 6 C 0.09 0.95 4.07 -67.27 -0.27 0.67 16 7 H 0.10 0.98 7.87 -51.93 -0.41 0.57 16 8 N -0.67 -7.74 5.73 -106.25 -0.61 -8.35 16 9 C 0.06 0.78 5.53 -3.82 -0.02 0.76 16 10 C -0.12 -1.88 5.47 -26.73 -0.15 -2.03 16 11 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16 17 Si 0.88 22.21 27.47 -169.99 -4.67 17.55 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 C -0.09 -0.89 1.07 -154.63 -0.17 -1.05 16 22 C -0.13 -1.17 7.84 -26.28 -0.21 -1.38 16 23 C -0.13 -1.31 8.08 -25.75 -0.21 -1.52 16 24 C -0.10 -0.99 7.17 -26.20 -0.19 -1.18 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.92 7.82 -51.93 -0.41 0.51 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.34 3.84 8.09 -39.29 -0.32 3.52 16 31 H 0.07 0.94 8.13 -51.93 -0.42 0.51 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 38 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 45 H 0.07 0.81 7.49 -51.93 -0.39 0.42 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -30.97 356.09 -9.20 -40.17 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.61 Total: -0.94 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -1.10 Total: -22.05 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.17 Total: -36.06 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.35 Total: -4.04 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.97 -9.20 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713490862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.726 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds