Wall clock time and date at job start Mon Mar 30 2020 08:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00460 * 2 1 4 4 H 1.09008 * 112.94534 * 341.41318 * 3 2 1 5 5 C 1.53950 * 113.66333 * 112.81106 * 3 2 1 6 6 C 1.53950 * 87.29557 * 139.21262 * 5 3 2 7 7 H 1.08998 * 113.74962 * 89.74670 * 6 5 3 8 8 N 1.46898 * 113.66402 * 220.80007 * 6 5 3 9 9 C 1.46899 * 110.99656 * 252.18477 * 8 6 5 10 10 C 1.53003 * 109.47040 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47120 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47120 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47042 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00032 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99612 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99803 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00495 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46669 * 90.00093 * 17 15 13 19 19 H 1.48495 * 109.47198 * 209.99896 * 17 15 13 20 20 H 1.48503 * 109.47117 * 330.00561 * 17 15 13 21 21 C 1.52906 * 86.78208 * 335.26769 * 6 5 3 22 22 C 1.52913 * 121.13846 * 150.61759 * 21 6 5 23 23 C 1.53952 * 86.78179 * 100.82243 * 22 21 6 24 24 C 1.53068 * 121.06931 * 259.16126 * 21 6 5 25 25 H 1.08998 * 109.47325 * 59.99715 * 1 2 3 26 26 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46964 * 299.99390 * 1 2 3 28 28 H 1.09000 * 113.58006 * 24.60912 * 5 3 2 29 29 H 1.08999 * 113.65202 * 253.82637 * 5 3 2 30 30 H 1.00894 * 111.00017 * 16.13215 * 8 6 5 31 31 H 1.08997 * 109.47389 * 299.99569 * 9 8 6 32 32 H 1.09000 * 109.47736 * 60.00133 * 9 8 6 33 33 H 1.08995 * 109.47370 * 299.99549 * 10 9 8 34 34 H 1.08997 * 109.47117 * 60.00139 * 10 9 8 35 35 H 1.08993 * 109.47238 * 300.00357 * 11 10 9 36 36 H 1.08997 * 109.46860 * 60.00169 * 11 10 9 37 37 H 1.08997 * 109.46857 * 300.00301 * 12 11 10 38 38 H 1.08992 * 109.46773 * 60.00023 * 12 11 10 39 39 H 0.97004 * 120.00108 * 180.02562 * 16 15 13 40 40 H 1.09000 * 113.66161 * 346.35132 * 22 21 6 41 41 H 1.09002 * 113.66537 * 215.28969 * 22 21 6 42 42 H 1.09002 * 113.58142 * 139.33940 * 23 22 21 43 43 H 1.09004 * 113.57653 * 270.05541 * 23 22 21 44 44 H 1.09006 * 113.66752 * 144.67391 * 24 21 6 45 45 H 1.09001 * 113.71350 * 13.57398 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3140 2.0807 -0.3200 5 6 2.7610 1.6474 1.2998 6 6 3.8398 2.3025 0.4182 7 1 3.6593 3.3580 0.2150 8 7 5.2121 2.0339 0.8683 9 6 5.8165 3.2349 1.4602 10 6 7.2417 2.9165 1.9167 11 6 7.8714 4.1675 2.5326 12 6 9.2969 3.8493 2.9884 13 6 9.9169 5.0814 3.5957 14 1 9.3507 5.9994 3.6513 15 6 11.2069 5.0365 4.0801 16 7 11.7478 6.1116 4.6105 17 14 12.1860 3.4485 3.9846 18 1 12.9311 3.4030 2.7008 19 1 13.1456 3.3898 5.1163 20 1 11.2595 2.2905 4.0605 21 6 3.3679 1.3728 -0.7002 22 6 3.4804 1.7824 -2.1692 23 6 4.7330 0.8896 -2.2322 24 6 4.1433 0.1001 -1.0495 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.1146 0.7709 1.8426 29 1 2.2309 2.3545 1.9378 30 1 5.2354 1.2607 1.5161 31 1 5.8421 4.0324 0.7177 32 1 5.2240 3.5552 2.3172 33 1 7.2158 2.1192 2.6594 34 1 7.8345 2.5960 1.0600 35 1 7.8973 4.9646 1.7897 36 1 7.2787 4.4884 3.3892 37 1 9.2713 3.0521 3.7312 38 1 9.8892 3.5287 2.1316 39 1 12.6556 6.0802 4.9511 40 1 3.6908 2.8422 -2.3129 41 1 2.6569 1.4249 -2.7874 42 1 4.8080 0.3077 -3.1509 43 1 5.6561 1.4156 -1.9884 44 1 3.5064 -0.7311 -1.3524 45 1 4.8826 -0.1823 -0.3000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713490862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:38:10 Heat of formation + Delta-G solvation = -39.127045 kcal Electronic energy + Delta-G solvation = -20388.346413 eV Core-core repulsion = 17405.779152 eV Total energy + Delta-G solvation = -2982.567261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68279 -38.04547 -37.48574 -35.96924 -34.67550 -33.27179 -30.14751 -27.69940 -26.67934 -26.13474 -25.43981 -23.90410 -22.64305 -21.94875 -21.64833 -19.12526 -18.76410 -17.63463 -17.03193 -16.64763 -16.51621 -16.29370 -15.96133 -15.58588 -15.18322 -14.83085 -14.55032 -14.24730 -13.82053 -13.62715 -13.44191 -13.16678 -13.10258 -12.97168 -12.82107 -12.51550 -12.35320 -12.18721 -12.06807 -11.92045 -11.75588 -11.48748 -11.36088 -11.28584 -11.19466 -11.04345 -10.88047 -10.76146 -10.15758 -9.23190 -8.29603 -6.33598 1.36170 1.37817 1.50460 2.36661 2.76548 3.05795 3.29447 3.51845 3.61517 3.75151 3.84061 3.97404 4.09415 4.12481 4.27287 4.31290 4.45962 4.53963 4.55499 4.57831 4.65073 4.68768 4.75546 4.82096 4.87174 4.90660 4.93436 4.96322 5.03415 5.09009 5.16566 5.17768 5.22924 5.28585 5.32253 5.58884 5.61077 5.66259 5.68241 5.69393 6.16872 6.29727 6.34876 6.48718 6.74777 7.31274 8.87383 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035103 B = 0.002940 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.470429 B = 9523.139514 C = 9761.505121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.391 6.391 3 C 0.076 3.924 4 H 0.100 0.900 5 C -0.177 4.177 6 C 0.092 3.908 7 H 0.102 0.898 8 N -0.673 5.673 9 C 0.070 3.930 10 C -0.106 4.106 11 C -0.094 4.094 12 C -0.013 4.013 13 C -0.534 4.534 14 H 0.030 0.970 15 C 0.000 4.000 16 N -0.953 5.953 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.246 1.246 21 C -0.093 4.093 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.097 4.097 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.345 0.655 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.266 0.734 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.022 -14.040 -12.948 30.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.018 3.982 4 H 0.118 0.882 5 C -0.217 4.217 6 C -0.019 4.019 7 H 0.120 0.880 8 N -0.303 5.303 9 C -0.059 4.059 10 C -0.144 4.144 11 C -0.133 4.133 12 C -0.050 4.050 13 C -0.572 4.572 14 H 0.048 0.952 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.170 1.170 21 C -0.094 4.094 22 C -0.159 4.159 23 C -0.170 4.170 24 C -0.134 4.134 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.479 -14.032 -13.484 30.496 hybrid contribution 0.126 0.276 1.230 1.267 sum -23.353 -13.757 -12.254 29.745 Atomic orbital electron populations 1.22938 0.80177 1.03539 1.00562 1.87912 1.20801 1.27684 1.94599 1.23408 0.93597 0.85270 0.95936 0.88243 1.24117 0.98903 1.01028 0.97629 1.22484 0.86379 0.98320 0.94732 0.87998 1.60300 1.18057 1.07343 1.44622 1.21879 0.94009 0.92648 0.97335 1.21487 0.95519 0.97261 1.00158 1.21283 0.95565 0.97316 0.99091 1.19544 0.94681 0.95081 0.95695 1.21575 0.99108 0.97589 1.38972 0.95188 1.26082 0.99017 1.00278 0.94242 1.70080 1.15752 1.31105 1.42503 0.85601 0.78476 0.80056 0.78166 1.19130 1.20922 1.16974 1.23009 0.93973 0.98012 0.94380 1.22712 0.98405 0.99867 0.94945 1.22718 0.97672 0.98420 0.98171 1.22254 0.98060 0.95143 0.97951 0.93141 0.88906 0.93618 0.89841 0.90661 0.83592 0.91288 0.95137 0.92180 0.91821 0.93481 0.93563 0.96370 0.96506 0.92517 0.91480 0.89599 0.91600 0.90793 0.90406 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.85 113.37 1.23 1.51 16 2 O -0.39 -7.06 10.03 -148.98 -1.49 -8.55 16 3 C 0.08 1.23 4.19 30.88 0.13 1.36 16 4 H 0.10 1.31 7.87 -2.38 -0.02 1.29 16 5 C -0.18 -3.00 7.54 31.23 0.24 -2.77 16 6 C 0.09 1.69 4.07 45.21 0.18 1.87 16 7 H 0.10 1.83 7.87 -2.39 -0.02 1.81 16 8 N -0.67 -14.44 5.73 -490.08 -2.81 -17.25 16 9 C 0.07 1.73 5.53 86.30 0.48 2.21 16 10 C -0.11 -3.20 5.47 30.60 0.17 -3.04 16 11 C -0.09 -3.69 5.15 30.60 0.16 -3.53 16 12 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 13 C -0.53 -31.78 9.66 25.60 0.25 -31.54 16 14 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 15 C 0.00 0.01 5.47 84.65 0.46 0.47 16 16 N -0.95 -61.17 13.96 21.44 0.30 -60.87 16 17 Si 0.95 45.32 27.47 68.60 1.88 47.21 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 21 C -0.09 -1.63 1.07 -52.26 -0.06 -1.69 16 22 C -0.12 -2.02 7.84 30.89 0.24 -1.78 16 23 C -0.13 -2.45 8.08 31.23 0.25 -2.20 16 24 C -0.10 -1.86 7.17 30.94 0.22 -1.64 16 25 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 1.56 7.82 -2.39 -0.02 1.54 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.34 7.18 8.09 -89.70 -0.73 6.45 16 31 H 0.07 1.73 8.13 -2.39 -0.02 1.72 16 32 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 38 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.08 1.53 7.85 -2.38 -0.02 1.51 16 45 H 0.06 1.34 7.49 -2.39 -0.02 1.32 16 Total: -1.00 -66.68 356.09 2.10 -64.58 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.14 Total: 16.12 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 4.07 Total: -41.24 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.51 Total: -78.12 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -1.49 Total: -8.55 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -66.68 2.10 -64.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713490862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.454 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds