Wall clock time and date at job start Mon Mar 30 2020 08:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99615 * 2 1 4 4 H 1.08991 * 112.88539 * 18.65322 * 3 2 1 5 5 C 1.53955 * 113.65933 * 247.18521 * 3 2 1 6 6 C 1.53950 * 87.29560 * 220.79412 * 5 3 2 7 7 H 1.08997 * 113.75134 * 270.25239 * 6 5 3 8 8 N 1.46901 * 113.66100 * 139.20340 * 6 5 3 9 9 C 1.46902 * 110.99715 * 107.81711 * 8 6 5 10 10 C 1.53004 * 109.47120 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47049 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46713 * 180.02562 * 11 10 9 13 13 C 1.50708 * 109.46488 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99563 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99973 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99718 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47020 * 90.00286 * 17 15 13 19 19 H 1.48504 * 109.46702 * 210.00198 * 17 15 13 20 20 H 1.48496 * 109.47297 * 329.99991 * 17 15 13 21 21 C 1.52907 * 113.66203 * 150.00092 * 3 2 1 22 22 C 1.52909 * 121.13625 * 13.65222 * 21 3 2 23 23 C 1.53953 * 86.78247 * 209.38193 * 22 21 3 24 24 C 1.52909 * 121.13625 * 265.08983 * 21 3 2 25 25 H 1.09001 * 109.47659 * 60.00215 * 1 2 3 26 26 H 1.09006 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47325 * 300.00090 * 1 2 3 28 28 H 1.08999 * 113.58121 * 335.39888 * 5 3 2 29 29 H 1.09000 * 113.57495 * 106.19226 * 5 3 2 30 30 H 1.00896 * 110.99809 * 343.86399 * 8 6 5 31 31 H 1.09002 * 109.46967 * 300.00154 * 9 8 6 32 32 H 1.09000 * 109.47005 * 59.99770 * 9 8 6 33 33 H 1.08997 * 109.46584 * 300.00349 * 10 9 8 34 34 H 1.09000 * 109.46435 * 59.99825 * 10 9 8 35 35 H 1.09002 * 109.47114 * 300.00253 * 11 10 9 36 36 H 1.09000 * 109.46928 * 59.99913 * 11 10 9 37 37 H 1.08996 * 109.46744 * 299.99764 * 12 11 10 38 38 H 1.08994 * 109.46968 * 60.00313 * 12 11 10 39 39 H 0.96997 * 120.00015 * 180.02562 * 16 15 13 40 40 H 1.09007 * 113.66271 * 323.84820 * 22 21 3 41 41 H 1.09002 * 113.66600 * 94.90793 * 22 21 3 42 42 H 1.09002 * 113.57682 * 270.13011 * 23 22 21 43 43 H 1.08995 * 113.58442 * 139.33592 * 23 22 21 44 44 H 1.08998 * 113.65988 * 265.08366 * 24 21 3 45 45 H 1.08994 * 113.66219 * 36.14737 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3134 2.0797 0.3212 5 6 2.7609 1.6476 -1.2998 6 6 3.8397 2.3027 -0.4183 7 1 3.6592 3.3582 -0.2151 8 7 5.2120 2.0341 -0.8685 9 6 5.8163 3.2352 -1.4604 10 6 7.2420 2.9172 -1.9158 11 6 7.8712 4.1679 -2.5328 12 6 9.2966 3.8496 -2.9887 13 6 9.9166 5.0818 -3.5959 14 1 9.3503 5.9997 -3.6515 15 6 11.2066 5.0371 -4.0805 16 7 11.8959 3.9190 -4.0133 17 14 11.9748 6.5641 -4.8338 18 1 12.6640 7.3450 -3.7754 19 1 12.9576 6.1628 -5.8723 20 1 10.9135 7.3982 -5.4527 21 6 3.3678 1.3729 0.7002 22 6 4.1410 0.1010 1.0500 23 6 4.7330 0.8898 2.2321 24 6 3.4803 1.7825 2.1692 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1146 0.7711 -1.8427 29 1 2.2298 2.3548 -1.9368 30 1 5.2352 1.2609 -1.5162 31 1 5.2237 3.5554 -2.3173 32 1 5.8418 4.0327 -0.7178 33 1 7.8343 2.5971 -1.0585 34 1 7.2168 2.1195 -2.6582 35 1 7.2787 4.4875 -3.3901 36 1 7.8962 4.9658 -1.7907 37 1 9.8893 3.5298 -2.1317 38 1 9.2711 3.0519 -3.7309 39 1 12.8036 3.8876 -4.3539 40 1 3.5032 -0.7292 1.3537 41 1 4.8792 -0.1826 0.2998 42 1 5.6559 1.4155 1.9870 43 1 4.8080 0.3079 3.1508 44 1 3.6908 2.8423 2.3129 45 1 2.6569 1.4250 2.7873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713490863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:38:14 Heat of formation + Delta-G solvation = -23.820343 kcal Electronic energy + Delta-G solvation = -20332.658374 eV Core-core repulsion = 17350.754861 eV Total energy + Delta-G solvation = -2981.903513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89864 -37.29874 -36.27930 -34.56019 -33.08970 -31.51024 -28.14167 -26.99254 -25.79093 -24.68044 -24.57931 -22.91625 -21.41423 -21.05815 -20.00116 -18.20437 -16.91231 -16.25873 -16.17010 -15.70914 -15.47296 -15.00574 -14.76695 -14.42391 -14.01984 -13.69346 -13.04833 -12.91755 -12.44922 -12.40769 -12.24411 -12.12416 -11.82709 -11.72698 -11.55934 -11.22501 -11.19553 -10.99566 -10.65925 -10.54330 -10.41687 -10.38270 -10.30459 -10.14997 -9.60107 -9.43222 -9.22242 -8.97091 -8.31020 -8.26476 -5.95670 -3.97830 3.34080 3.40009 3.43426 3.47285 4.19791 4.29835 4.38522 4.48791 4.49457 4.68604 4.76811 4.89694 4.95260 5.07959 5.13762 5.27350 5.34397 5.39662 5.44813 5.47062 5.54463 5.60692 5.66346 5.74808 5.82086 5.86923 5.94294 5.97077 6.16971 6.19871 6.29725 6.41101 6.51416 6.54879 6.86060 6.99612 7.00318 7.10235 7.27147 7.45387 7.73639 7.89889 8.05724 8.48452 9.09783 9.65869 11.15708 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039137 B = 0.002759 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.268017 B =10146.705618 C =10434.541269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.073 3.927 4 H 0.085 0.915 5 C -0.181 4.181 6 C 0.094 3.906 7 H 0.098 0.902 8 N -0.672 5.672 9 C 0.060 3.940 10 C -0.116 4.116 11 C -0.108 4.108 12 C 0.021 3.979 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.092 4.092 22 C -0.097 4.097 23 C -0.132 4.132 24 C -0.127 4.127 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.343 0.657 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.006 -6.980 10.563 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.014 3.986 4 H 0.103 0.897 5 C -0.221 4.221 6 C -0.017 4.017 7 H 0.116 0.884 8 N -0.301 5.301 9 C -0.069 4.069 10 C -0.154 4.154 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.093 4.093 22 C -0.134 4.134 23 C -0.170 4.170 24 C -0.164 4.164 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.426 -7.109 11.125 26.024 hybrid contribution -0.282 1.125 -1.361 1.789 sum -22.708 -5.984 9.764 25.432 Atomic orbital electron populations 1.22773 0.81667 1.02550 0.99719 1.87949 1.19085 1.27311 1.94525 1.23408 0.93633 0.84966 0.96558 0.89723 1.24184 0.99123 1.01330 0.97431 1.22428 0.87194 0.97864 0.94228 0.88416 1.60347 1.16805 1.08093 1.44879 1.22112 0.95781 0.91940 0.97045 1.21636 0.93778 0.99492 1.00448 1.21583 0.99163 0.95265 0.98649 1.19091 0.89616 0.96688 0.96210 1.21295 0.98466 0.97098 1.38950 0.92803 1.25039 0.97365 0.95982 0.96183 1.69970 1.10680 1.25846 1.47071 0.86612 0.79109 0.83364 0.79016 1.20679 1.21246 1.19941 1.23000 0.93534 0.98606 0.94174 1.22274 0.98215 0.94867 0.98087 1.22765 0.97941 0.98285 0.97991 1.22723 0.98616 0.99937 0.95171 0.94236 0.89850 0.94233 0.88994 0.91446 0.83805 0.95578 0.91351 0.91655 0.92793 0.93741 0.93496 0.96619 0.96747 0.93056 0.90228 0.90780 0.89327 0.92301 0.91610 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.31 16 2 O -0.37 -3.80 10.02 -35.23 -0.35 -4.15 16 3 C 0.07 0.69 4.19 -26.28 -0.11 0.58 16 4 H 0.08 0.69 7.87 -51.93 -0.41 0.29 16 5 C -0.18 -1.77 7.54 -25.75 -0.19 -1.96 16 6 C 0.09 0.99 4.07 -67.26 -0.27 0.72 16 7 H 0.10 1.02 7.87 -51.93 -0.41 0.61 16 8 N -0.67 -8.19 5.73 -106.24 -0.61 -8.80 16 9 C 0.06 0.83 5.53 -3.82 -0.02 0.81 16 10 C -0.12 -1.98 5.47 -26.73 -0.15 -2.12 16 11 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 17 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 21 C -0.09 -0.93 1.07 -154.71 -0.17 -1.09 16 22 C -0.10 -1.04 7.15 -26.28 -0.19 -1.23 16 23 C -0.13 -1.37 8.08 -25.75 -0.21 -1.58 16 24 C -0.13 -1.22 7.84 -26.28 -0.21 -1.42 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.96 7.82 -51.93 -0.41 0.56 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.34 4.10 8.09 -39.29 -0.32 3.78 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 41 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -30.55 359.67 -9.57 -40.12 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.64 Total: -0.97 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -1.10 Total: -21.84 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.13 Total: -35.56 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.35 Total: -4.15 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.55 -9.57 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713490863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.301 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds