Wall clock time and date at job start Mon Mar 30 2020 08:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99615 * 2 1 4 4 H 1.08991 * 112.88539 * 18.65322 * 3 2 1 5 5 C 1.53955 * 113.65933 * 247.18521 * 3 2 1 6 6 C 1.53950 * 87.29560 * 220.79412 * 5 3 2 7 7 H 1.08997 * 113.75134 * 270.25239 * 6 5 3 8 8 N 1.46901 * 113.66100 * 139.20340 * 6 5 3 9 9 C 1.46902 * 110.99715 * 107.81711 * 8 6 5 10 10 C 1.53004 * 109.47120 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47049 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46713 * 180.02562 * 11 10 9 13 13 C 1.50708 * 109.46488 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99563 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99973 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99718 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47020 * 90.00286 * 17 15 13 19 19 H 1.48504 * 109.46702 * 210.00198 * 17 15 13 20 20 H 1.48496 * 109.47297 * 329.99991 * 17 15 13 21 21 C 1.52907 * 113.66203 * 150.00092 * 3 2 1 22 22 C 1.52909 * 121.13625 * 13.65222 * 21 3 2 23 23 C 1.53953 * 86.78247 * 209.38193 * 22 21 3 24 24 C 1.52909 * 121.13625 * 265.08983 * 21 3 2 25 25 H 1.09001 * 109.47659 * 60.00215 * 1 2 3 26 26 H 1.09006 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47325 * 300.00090 * 1 2 3 28 28 H 1.08999 * 113.58121 * 335.39888 * 5 3 2 29 29 H 1.09000 * 113.57495 * 106.19226 * 5 3 2 30 30 H 1.00896 * 110.99809 * 343.86399 * 8 6 5 31 31 H 1.09002 * 109.46967 * 300.00154 * 9 8 6 32 32 H 1.09000 * 109.47005 * 59.99770 * 9 8 6 33 33 H 1.08997 * 109.46584 * 300.00349 * 10 9 8 34 34 H 1.09000 * 109.46435 * 59.99825 * 10 9 8 35 35 H 1.09002 * 109.47114 * 300.00253 * 11 10 9 36 36 H 1.09000 * 109.46928 * 59.99913 * 11 10 9 37 37 H 1.08996 * 109.46744 * 299.99764 * 12 11 10 38 38 H 1.08994 * 109.46968 * 60.00313 * 12 11 10 39 39 H 0.96997 * 120.00015 * 180.02562 * 16 15 13 40 40 H 1.09007 * 113.66271 * 323.84820 * 22 21 3 41 41 H 1.09002 * 113.66600 * 94.90793 * 22 21 3 42 42 H 1.09002 * 113.57682 * 270.13011 * 23 22 21 43 43 H 1.08995 * 113.58442 * 139.33592 * 23 22 21 44 44 H 1.08998 * 113.65988 * 265.08366 * 24 21 3 45 45 H 1.08994 * 113.66219 * 36.14737 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3134 2.0797 0.3212 5 6 2.7609 1.6476 -1.2998 6 6 3.8397 2.3027 -0.4183 7 1 3.6592 3.3582 -0.2151 8 7 5.2120 2.0341 -0.8685 9 6 5.8163 3.2352 -1.4604 10 6 7.2420 2.9172 -1.9158 11 6 7.8712 4.1679 -2.5328 12 6 9.2966 3.8496 -2.9887 13 6 9.9166 5.0818 -3.5959 14 1 9.3503 5.9997 -3.6515 15 6 11.2066 5.0371 -4.0805 16 7 11.8959 3.9190 -4.0133 17 14 11.9748 6.5641 -4.8338 18 1 12.6640 7.3450 -3.7754 19 1 12.9576 6.1628 -5.8723 20 1 10.9135 7.3982 -5.4527 21 6 3.3678 1.3729 0.7002 22 6 4.1410 0.1010 1.0500 23 6 4.7330 0.8898 2.2321 24 6 3.4803 1.7825 2.1692 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1146 0.7711 -1.8427 29 1 2.2298 2.3548 -1.9368 30 1 5.2352 1.2609 -1.5162 31 1 5.2237 3.5554 -2.3173 32 1 5.8418 4.0327 -0.7178 33 1 7.8343 2.5971 -1.0585 34 1 7.2168 2.1195 -2.6582 35 1 7.2787 4.4875 -3.3901 36 1 7.8962 4.9658 -1.7907 37 1 9.8893 3.5298 -2.1317 38 1 9.2711 3.0519 -3.7309 39 1 12.8036 3.8876 -4.3539 40 1 3.5032 -0.7292 1.3537 41 1 4.8792 -0.1826 0.2998 42 1 5.6559 1.4155 1.9870 43 1 4.8080 0.3079 3.1508 44 1 3.6908 2.8423 2.3129 45 1 2.6569 1.4250 2.7873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713490863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:38:14 Heat of formation + Delta-G solvation = -41.486961 kcal Electronic energy + Delta-G solvation = -20333.424456 eV Core-core repulsion = 17350.754861 eV Total energy + Delta-G solvation = -2982.669595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68795 -38.04135 -37.46978 -35.96897 -34.68709 -33.09489 -29.78136 -27.67698 -26.67640 -26.19930 -25.44656 -24.03334 -22.77941 -21.97870 -21.64328 -19.06627 -18.39334 -17.63017 -17.02990 -16.66067 -16.51507 -16.45205 -15.94070 -15.57463 -15.16381 -14.65068 -14.46381 -14.14367 -13.80045 -13.57292 -13.33671 -13.14600 -12.99915 -12.95679 -12.81812 -12.50917 -12.39374 -12.24916 -12.11576 -12.06539 -11.92336 -11.40503 -11.35400 -11.23819 -11.19704 -11.01584 -10.81723 -10.55350 -10.15521 -9.22682 -8.19766 -6.31371 1.39375 1.41290 1.52344 2.40922 2.77097 3.12860 3.30292 3.52039 3.61705 3.75379 3.84888 3.97361 4.09147 4.12998 4.28816 4.31710 4.47029 4.54890 4.57567 4.59245 4.66847 4.70469 4.76266 4.86571 4.87570 4.90926 4.94549 4.96161 5.05649 5.10015 5.16302 5.26335 5.28999 5.32660 5.37819 5.55926 5.60808 5.67768 5.78894 5.87473 6.18542 6.26175 6.35427 6.47358 6.86467 7.37967 8.92201 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039137 B = 0.002759 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.268017 B =10146.705618 C =10434.541269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.078 3.922 4 H 0.102 0.898 5 C -0.177 4.177 6 C 0.092 3.908 7 H 0.105 0.895 8 N -0.676 5.676 9 C 0.074 3.926 10 C -0.105 4.105 11 C -0.096 4.096 12 C 0.023 3.977 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.262 1.262 21 C -0.094 4.094 22 C -0.098 4.098 23 C -0.134 4.134 24 C -0.120 4.120 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.343 0.657 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.051 0.949 37 H -0.012 1.012 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.675 -5.729 10.750 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C 0.019 3.981 4 H 0.120 0.880 5 C -0.217 4.217 6 C -0.019 4.019 7 H 0.123 0.877 8 N -0.306 5.306 9 C -0.055 4.055 10 C -0.143 4.143 11 C -0.134 4.134 12 C -0.014 4.014 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.095 4.095 22 C -0.135 4.135 23 C -0.171 4.171 24 C -0.157 4.157 25 H 0.064 0.936 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.163 0.837 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.120 -5.861 11.322 27.282 hybrid contribution 0.235 0.658 -1.403 1.567 sum -23.885 -5.203 9.919 26.381 Atomic orbital electron populations 1.22945 0.80140 1.03534 1.00602 1.87919 1.20852 1.27737 1.94597 1.23405 0.93543 0.85279 0.95851 0.88045 1.24116 0.98888 1.01010 0.97664 1.22502 0.86238 0.98426 0.94726 0.87741 1.60294 1.18222 1.07378 1.44698 1.21865 0.93610 0.92627 0.97417 1.21459 0.95694 0.97523 0.99664 1.21387 0.95874 0.97066 0.99073 1.19024 0.92780 0.95291 0.94353 1.21753 0.99187 0.98005 1.39290 0.92156 1.26040 0.97988 0.99552 0.96561 1.70110 1.11174 1.28315 1.47957 0.85424 0.78261 0.79006 0.78221 1.19689 1.20698 1.18648 1.22989 0.94069 0.97956 0.94473 1.22232 0.98082 0.95276 0.97954 1.22722 0.97714 0.98498 0.98162 1.22703 0.98285 0.99874 0.94871 0.93564 0.88948 0.93083 0.90027 0.90476 0.83737 0.94842 0.91020 0.92771 0.93084 0.93144 0.93057 0.99359 0.99309 0.92779 0.90332 0.92144 0.90965 0.91556 0.91369 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.85 113.37 1.23 1.52 16 2 O -0.39 -7.39 10.02 -148.98 -1.49 -8.88 16 3 C 0.08 1.31 4.19 30.89 0.13 1.44 16 4 H 0.10 1.37 7.87 -2.39 -0.02 1.35 16 5 C -0.18 -3.16 7.54 31.23 0.24 -2.93 16 6 C 0.09 1.79 4.07 45.21 0.18 1.97 16 7 H 0.10 1.93 7.87 -2.39 -0.02 1.91 16 8 N -0.68 -15.92 5.73 -490.04 -2.81 -18.73 16 9 C 0.07 1.96 5.53 86.30 0.48 2.43 16 10 C -0.11 -3.60 5.47 30.60 0.17 -3.43 16 11 C -0.10 -4.00 5.15 30.59 0.16 -3.84 16 12 C 0.02 1.24 4.97 29.85 0.15 1.38 16 13 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 16 N -0.94 -58.39 13.29 21.45 0.28 -58.10 16 17 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 C -0.09 -1.75 1.07 -52.31 -0.06 -1.81 16 22 C -0.10 -2.04 7.15 30.89 0.22 -1.82 16 23 C -0.13 -2.67 8.08 31.23 0.25 -2.42 16 24 C -0.12 -2.09 7.84 30.89 0.24 -1.85 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.08 1.64 7.82 -2.39 -0.02 1.62 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.34 8.06 8.09 -89.70 -0.73 7.33 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.08 1.65 7.84 -2.38 -0.02 1.63 16 41 H 0.06 1.41 7.49 -2.39 -0.02 1.39 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -65.59 359.67 2.29 -63.29 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.20 Total: 16.13 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 4.08 Total: -40.75 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -2.52 Total: -76.83 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -1.49 Total: -8.88 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.59 2.29 -63.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713490863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.807 kcal (2) G-P(sol) polarization free energy of solvation -65.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds