Wall clock time and date at job start Mon Mar 30 2020 08:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00271 * 2 1 4 4 H 1.09003 * 112.88032 * 341.33965 * 3 2 1 5 5 C 1.54146 * 113.58190 * 112.81277 * 3 2 1 6 6 C 1.53948 * 87.22235 * 89.81976 * 5 3 2 7 7 H 1.09003 * 113.66258 * 270.13408 * 6 5 3 8 8 N 1.46905 * 113.66073 * 139.17656 * 6 5 3 9 9 C 1.46902 * 110.99800 * 106.01080 * 8 6 5 10 10 C 1.53006 * 109.46626 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46997 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47240 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00243 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47195 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46997 * 120.00167 * 17 15 13 20 20 H 1.48500 * 109.47074 * 240.00161 * 17 15 13 21 21 C 1.52902 * 86.88891 * 24.65419 * 6 5 3 22 22 C 1.52907 * 121.14235 * 209.42311 * 21 6 5 23 23 C 1.53949 * 86.78575 * 209.38273 * 22 21 6 24 24 C 1.52916 * 121.13647 * 100.86229 * 21 6 5 25 25 H 1.08995 * 109.46977 * 60.00387 * 1 2 3 26 26 H 1.09001 * 109.47418 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47434 * 300.00553 * 1 2 3 28 28 H 1.09001 * 113.63771 * 335.23855 * 5 3 2 29 29 H 1.08996 * 113.57854 * 204.39368 * 5 3 2 30 30 H 1.00898 * 110.99743 * 229.96030 * 8 6 5 31 31 H 1.08993 * 109.47737 * 60.00169 * 9 8 6 32 32 H 1.09000 * 109.47263 * 299.99731 * 9 8 6 33 33 H 1.09000 * 109.47050 * 299.99824 * 10 9 8 34 34 H 1.09001 * 109.46801 * 59.99937 * 10 9 8 35 35 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 36 36 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 37 37 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 38 38 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 39 39 H 0.96992 * 120.00032 * 179.97438 * 16 15 13 40 40 H 1.09001 * 113.66374 * 323.86087 * 22 21 6 41 41 H 1.09006 * 113.65775 * 94.90833 * 22 21 6 42 42 H 1.09002 * 113.58280 * 270.13277 * 23 22 21 43 43 H 1.08997 * 113.57749 * 139.33826 * 23 22 21 44 44 H 1.08999 * 113.66001 * 265.09910 * 24 21 6 45 45 H 1.09000 * 113.65984 * 36.14576 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3135 2.0796 -0.3213 5 6 2.7615 1.6460 1.3022 6 6 4.0188 1.0486 0.6448 7 1 4.1415 -0.0194 0.8254 8 7 5.2431 1.8168 0.9077 9 6 6.1024 1.1225 1.8760 10 6 7.3643 1.9515 2.1241 11 6 8.2590 1.2288 3.1331 12 6 9.5211 2.0574 3.3808 13 6 10.4027 1.3453 4.3741 14 1 10.0939 0.3963 4.7871 15 6 11.6040 1.9046 4.7548 16 7 11.9803 3.0600 4.2515 17 14 12.6965 1.0223 5.9867 18 1 12.0504 -0.2496 6.3992 19 1 14.0111 0.7290 5.3613 20 1 12.8966 1.8856 7.1782 21 6 3.3679 1.3726 -0.7003 22 6 3.6592 0.5307 -1.9430 23 6 3.4010 1.8080 -2.7627 24 6 3.7833 2.6061 -1.5029 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.4127 1.0830 2.1680 29 1 2.8368 2.7161 1.4950 30 1 5.7424 2.0055 0.0514 31 1 6.3809 0.1460 1.4800 32 1 5.5625 0.9937 2.8141 33 1 7.9044 2.0807 1.1862 34 1 7.0854 2.9279 2.5203 35 1 7.7187 1.0999 4.0709 36 1 8.5379 0.2522 2.7372 37 1 10.0613 2.1859 2.4428 38 1 9.2427 3.0341 3.7764 39 1 12.8252 3.4537 4.5197 40 1 4.6881 0.1752 -1.9993 41 1 2.9270 -0.2574 -2.1189 42 1 2.3594 1.9332 -3.0586 43 1 4.0960 1.9422 -3.5915 44 1 3.1503 3.4759 -1.3272 45 1 4.8471 2.8341 -1.4355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713490864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:38:18 Heat of formation + Delta-G solvation = -21.871450 kcal Electronic energy + Delta-G solvation = -20301.323766 eV Core-core repulsion = 17319.504764 eV Total energy + Delta-G solvation = -2981.819002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.99595 -37.36257 -36.26458 -34.49889 -33.07490 -31.51071 -28.13202 -26.94767 -25.92227 -24.98944 -24.47413 -23.11733 -21.28653 -20.96490 -19.96241 -18.33184 -16.86746 -16.32667 -16.08277 -15.96476 -15.25973 -15.18836 -14.69286 -14.41900 -14.30720 -13.79861 -13.01105 -12.67533 -12.62003 -12.49703 -12.27946 -12.04962 -12.00229 -11.83727 -11.55711 -11.29019 -11.20912 -10.97080 -10.58344 -10.56656 -10.42381 -10.37716 -10.27322 -10.08199 -9.58484 -9.57751 -9.19743 -8.94162 -8.31304 -8.28520 -5.94888 -3.96837 3.27067 3.33903 3.41058 3.45683 4.19554 4.23027 4.36818 4.50318 4.56254 4.60302 4.72105 4.76851 4.91501 5.05084 5.12571 5.21805 5.33270 5.40456 5.40787 5.47964 5.51130 5.57836 5.64551 5.72409 5.77446 5.84189 5.88795 5.97862 6.00981 6.16161 6.22788 6.30005 6.37409 6.57701 6.88526 6.94996 7.02681 7.15399 7.31556 7.49914 7.75092 7.91180 8.06760 8.49816 9.11033 9.66925 11.16557 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.002768 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.880745 B =10113.059461 C =10531.511110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.087 3.913 4 H 0.074 0.926 5 C -0.141 4.141 6 C 0.080 3.920 7 H 0.075 0.925 8 N -0.677 5.677 9 C 0.059 3.941 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.142 4.142 24 C -0.104 4.104 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.338 0.662 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.530 -3.070 -13.200 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.028 3.972 4 H 0.092 0.908 5 C -0.179 4.179 6 C -0.031 4.031 7 H 0.092 0.908 8 N -0.308 5.308 9 C -0.070 4.070 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.108 4.108 22 C -0.162 4.162 23 C -0.180 4.180 24 C -0.141 4.141 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.158 0.842 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.565 -2.721 -12.714 26.914 hybrid contribution 0.841 -0.964 0.220 1.298 sum -22.723 -3.684 -12.494 26.192 Atomic orbital electron populations 1.22802 0.81038 1.02719 0.99948 1.87871 1.19479 1.26531 1.94536 1.22739 0.92889 0.84881 0.96697 0.90773 1.23577 0.95537 1.02183 0.96644 1.22718 0.90037 0.96033 0.94278 0.90769 1.60680 1.07292 1.47129 1.15713 1.22117 0.93970 0.95137 0.95759 1.21635 0.94133 0.99519 1.00012 1.21588 0.97481 0.98921 0.96713 1.19097 0.90903 0.95052 0.96579 1.21339 1.03567 1.06009 1.24754 0.92733 1.25040 0.97957 0.95018 0.96587 1.69982 1.22225 1.17402 1.44016 0.86558 0.80542 0.79789 0.81250 1.19770 1.21056 1.21025 1.22999 0.95693 0.98707 0.93406 1.22650 1.01826 0.96838 0.94924 1.22867 1.01356 0.96819 0.96932 1.22520 1.02079 0.95407 0.94139 0.94113 0.89622 0.93947 0.91200 0.88497 0.84249 0.95656 0.91355 0.92870 0.91706 0.93470 0.93729 0.96761 0.96616 0.93132 0.90150 0.90909 0.90577 0.91385 0.91210 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.85 101.05 1.10 1.32 16 2 O -0.37 -3.77 10.20 -35.23 -0.36 -4.13 16 3 C 0.09 0.83 4.18 -26.18 -0.11 0.72 16 4 H 0.07 0.61 7.87 -51.93 -0.41 0.21 16 5 C -0.14 -1.52 7.73 -25.64 -0.20 -1.72 16 6 C 0.08 0.93 3.95 -67.27 -0.27 0.67 16 7 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 8 N -0.68 -8.75 6.30 -106.25 -0.67 -9.42 16 9 C 0.06 0.88 5.54 -3.82 -0.02 0.86 16 10 C -0.12 -2.03 5.48 -26.73 -0.15 -2.17 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 14 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 17 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.11 -1.05 0.92 -154.71 -0.14 -1.19 16 22 C -0.12 -1.17 7.71 -26.28 -0.20 -1.37 16 23 C -0.14 -1.14 8.08 -25.75 -0.21 -1.35 16 24 C -0.10 -0.91 7.37 -26.28 -0.19 -1.11 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.34 4.12 6.96 -39.29 -0.27 3.85 16 31 H 0.03 0.38 8.13 -51.93 -0.42 -0.05 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.71 7.83 -51.93 -0.41 0.31 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.84 6.71 -51.93 -0.35 0.49 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -31.01 358.85 -9.56 -40.57 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.57 Total: -1.32 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -1.08 Total: -21.34 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.07 Total: -36.29 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.36 Total: -4.13 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.01 -9.56 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713490864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.695 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds