Wall clock time and date at job start Mon Mar 30 2020 08:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00271 * 2 1 4 4 H 1.09003 * 112.88032 * 341.33965 * 3 2 1 5 5 C 1.54146 * 113.58190 * 112.81277 * 3 2 1 6 6 C 1.53948 * 87.22235 * 89.81976 * 5 3 2 7 7 H 1.09003 * 113.66258 * 270.13408 * 6 5 3 8 8 N 1.46905 * 113.66073 * 139.17656 * 6 5 3 9 9 C 1.46902 * 110.99800 * 106.01080 * 8 6 5 10 10 C 1.53006 * 109.46626 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46997 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47240 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00243 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47195 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46997 * 120.00167 * 17 15 13 20 20 H 1.48500 * 109.47074 * 240.00161 * 17 15 13 21 21 C 1.52902 * 86.88891 * 24.65419 * 6 5 3 22 22 C 1.52907 * 121.14235 * 209.42311 * 21 6 5 23 23 C 1.53949 * 86.78575 * 209.38273 * 22 21 6 24 24 C 1.52916 * 121.13647 * 100.86229 * 21 6 5 25 25 H 1.08995 * 109.46977 * 60.00387 * 1 2 3 26 26 H 1.09001 * 109.47418 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47434 * 300.00553 * 1 2 3 28 28 H 1.09001 * 113.63771 * 335.23855 * 5 3 2 29 29 H 1.08996 * 113.57854 * 204.39368 * 5 3 2 30 30 H 1.00898 * 110.99743 * 229.96030 * 8 6 5 31 31 H 1.08993 * 109.47737 * 60.00169 * 9 8 6 32 32 H 1.09000 * 109.47263 * 299.99731 * 9 8 6 33 33 H 1.09000 * 109.47050 * 299.99824 * 10 9 8 34 34 H 1.09001 * 109.46801 * 59.99937 * 10 9 8 35 35 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 36 36 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 37 37 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 38 38 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 39 39 H 0.96992 * 120.00032 * 179.97438 * 16 15 13 40 40 H 1.09001 * 113.66374 * 323.86087 * 22 21 6 41 41 H 1.09006 * 113.65775 * 94.90833 * 22 21 6 42 42 H 1.09002 * 113.58280 * 270.13277 * 23 22 21 43 43 H 1.08997 * 113.57749 * 139.33826 * 23 22 21 44 44 H 1.08999 * 113.66001 * 265.09910 * 24 21 6 45 45 H 1.09000 * 113.65984 * 36.14576 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3135 2.0796 -0.3213 5 6 2.7615 1.6460 1.3022 6 6 4.0188 1.0486 0.6448 7 1 4.1415 -0.0194 0.8254 8 7 5.2431 1.8168 0.9077 9 6 6.1024 1.1225 1.8760 10 6 7.3643 1.9515 2.1241 11 6 8.2590 1.2288 3.1331 12 6 9.5211 2.0574 3.3808 13 6 10.4027 1.3453 4.3741 14 1 10.0939 0.3963 4.7871 15 6 11.6040 1.9046 4.7548 16 7 11.9803 3.0600 4.2515 17 14 12.6965 1.0223 5.9867 18 1 12.0504 -0.2496 6.3992 19 1 14.0111 0.7290 5.3613 20 1 12.8966 1.8856 7.1782 21 6 3.3679 1.3726 -0.7003 22 6 3.6592 0.5307 -1.9430 23 6 3.4010 1.8080 -2.7627 24 6 3.7833 2.6061 -1.5029 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.4127 1.0830 2.1680 29 1 2.8368 2.7161 1.4950 30 1 5.7424 2.0055 0.0514 31 1 6.3809 0.1460 1.4800 32 1 5.5625 0.9937 2.8141 33 1 7.9044 2.0807 1.1862 34 1 7.0854 2.9279 2.5203 35 1 7.7187 1.0999 4.0709 36 1 8.5379 0.2522 2.7372 37 1 10.0613 2.1859 2.4428 38 1 9.2427 3.0341 3.7764 39 1 12.8252 3.4537 4.5197 40 1 4.6881 0.1752 -1.9993 41 1 2.9270 -0.2574 -2.1189 42 1 2.3594 1.9332 -3.0586 43 1 4.0960 1.9422 -3.5915 44 1 3.1503 3.4759 -1.3272 45 1 4.8471 2.8341 -1.4355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713490864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:38:17 Heat of formation + Delta-G solvation = -40.146639 kcal Electronic energy + Delta-G solvation = -20302.116238 eV Core-core repulsion = 17319.504764 eV Total energy + Delta-G solvation = -2982.611474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77676 -38.09288 -37.50741 -35.93468 -34.66426 -33.12873 -29.82056 -27.61886 -26.67214 -26.40775 -25.45660 -24.28070 -22.78290 -21.93173 -21.54145 -19.11133 -18.44899 -17.65383 -17.11495 -16.69063 -16.54449 -16.43379 -15.94582 -15.59642 -15.32714 -14.87287 -14.48341 -14.09774 -13.80548 -13.57322 -13.35520 -13.23479 -12.99118 -12.91336 -12.77649 -12.72407 -12.43660 -12.26047 -12.14033 -12.11090 -11.86766 -11.40065 -11.37044 -11.25698 -11.07941 -11.04885 -10.74592 -10.56292 -10.30186 -9.35847 -8.20433 -6.31874 1.39058 1.39589 1.53217 2.40537 2.60221 3.12159 3.20805 3.46072 3.58229 3.83088 3.86923 3.88693 4.01068 4.12116 4.24548 4.27706 4.47961 4.53219 4.55387 4.58451 4.59051 4.64619 4.80333 4.82222 4.85134 4.88489 4.92121 4.98169 5.07402 5.09359 5.11626 5.19296 5.24563 5.29094 5.35994 5.45872 5.54805 5.57854 5.77621 5.86570 6.14342 6.25731 6.31067 6.47229 6.85708 7.37431 8.91723 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.002768 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.880745 B =10113.059461 C =10531.511110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.388 6.388 3 C 0.094 3.906 4 H 0.092 0.908 5 C -0.141 4.141 6 C 0.073 3.927 7 H 0.059 0.941 8 N -0.675 5.675 9 C 0.071 3.929 10 C -0.103 4.103 11 C -0.097 4.097 12 C 0.024 3.976 13 C -0.544 4.544 14 H 0.058 0.942 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.106 4.106 22 C -0.128 4.128 23 C -0.132 4.132 24 C -0.103 4.103 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.342 0.658 31 H 0.027 0.973 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.048 0.952 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.540 -3.667 -13.491 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.307 6.307 3 C 0.035 3.965 4 H 0.110 0.890 5 C -0.179 4.179 6 C -0.037 4.037 7 H 0.077 0.923 8 N -0.307 5.307 9 C -0.058 4.058 10 C -0.141 4.141 11 C -0.135 4.135 12 C -0.014 4.014 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.107 4.107 22 C -0.165 4.165 23 C -0.169 4.169 24 C -0.141 4.141 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.162 0.838 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.597 -3.324 -13.015 28.026 hybrid contribution 1.132 -0.770 0.301 1.402 sum -23.464 -4.095 -12.714 27.000 Atomic orbital electron populations 1.22989 0.79426 1.03760 1.00883 1.87844 1.21343 1.26936 1.94575 1.22683 0.93067 0.85232 0.95523 0.89007 1.23567 0.95292 1.01960 0.97125 1.22755 0.89648 0.95067 0.96276 0.92315 1.60651 1.07365 1.47008 1.15693 1.21874 0.92874 0.94677 0.96379 1.21452 0.94774 0.99088 0.98815 1.21401 0.95707 0.98423 0.98007 1.19018 0.92906 0.94618 0.94818 1.21770 1.04489 1.06463 1.25510 0.92327 1.26025 0.99599 0.95788 0.98651 1.70110 1.22959 1.18984 1.45425 0.85377 0.78313 0.78786 0.78437 1.18633 1.20225 1.20229 1.23039 0.95530 0.99537 0.92566 1.22651 1.01366 0.97302 0.95194 1.22831 1.02158 0.95283 0.96652 1.22532 1.01993 0.95321 0.94236 0.92786 0.88651 0.93352 0.91871 0.88457 0.83756 0.95461 0.91601 0.92763 0.92455 0.93241 0.93320 0.99141 0.99172 0.92740 0.90705 0.91412 0.89541 0.90664 0.90404 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.85 113.37 1.23 1.54 16 2 O -0.39 -7.48 10.20 -148.98 -1.52 -9.00 16 3 C 0.09 1.65 4.18 30.95 0.13 1.78 16 4 H 0.09 1.29 7.87 -2.39 -0.02 1.27 16 5 C -0.14 -2.91 7.73 31.30 0.24 -2.67 16 6 C 0.07 1.65 3.95 45.20 0.18 1.83 16 7 H 0.06 1.53 7.88 -2.39 -0.02 1.51 16 8 N -0.68 -17.00 6.30 -490.06 -3.09 -20.09 16 9 C 0.07 2.08 5.54 86.31 0.48 2.56 16 10 C -0.10 -3.64 5.48 30.60 0.17 -3.47 16 11 C -0.10 -4.17 5.15 30.60 0.16 -4.01 16 12 C 0.02 1.29 4.97 29.85 0.15 1.44 16 13 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 17 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.11 -1.94 0.92 -52.31 -0.05 -1.99 16 22 C -0.13 -2.24 7.71 30.88 0.24 -2.00 16 23 C -0.13 -1.84 8.08 31.23 0.25 -1.59 16 24 C -0.10 -1.63 7.37 30.89 0.23 -1.40 16 25 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.34 8.07 6.96 -89.70 -0.62 7.45 16 31 H 0.03 0.79 8.13 -2.39 -0.02 0.77 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.25 7.83 -2.38 -0.02 1.23 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.09 1.47 6.71 -2.39 -0.02 1.46 16 Total: -1.00 -66.29 358.85 2.10 -64.19 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.30 Total: 15.25 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 4.10 Total: -39.62 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -2.80 Total: -78.14 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -1.52 Total: -9.00 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -66.29 2.10 -64.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713490864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.039 kcal (2) G-P(sol) polarization free energy of solvation -66.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds