Wall clock time and date at job start Mon Mar 30 2020 08:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99890 * 2 1 4 4 C 1.53002 * 109.46839 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47208 * 66.64671 * 4 3 2 6 6 C 1.46901 * 110.99684 * 283.12906 * 5 4 3 7 7 C 1.50698 * 109.47232 * 304.34144 * 6 5 4 8 8 H 1.07999 * 120.00280 * 354.86267 * 7 6 5 9 9 C 1.37881 * 119.99740 * 174.86669 * 7 6 5 10 10 N 1.31520 * 119.99575 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00206 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47040 * 270.00296 * 11 9 7 13 13 H 1.48498 * 109.46949 * 30.00253 * 11 9 7 14 14 H 1.48503 * 109.46975 * 149.99966 * 11 9 7 15 15 C 1.46902 * 111.00309 * 159.17663 * 5 4 3 16 16 C 1.52997 * 109.47451 * 199.76687 * 15 5 4 17 17 C 1.52994 * 109.47168 * 183.83450 * 16 15 5 18 18 H 1.09000 * 115.55338 * 330.71867 * 17 16 15 19 19 C 1.53000 * 117.49985 * 116.39250 * 17 16 15 20 20 C 1.52994 * 60.00184 * 107.48610 * 19 17 16 21 21 H 1.09003 * 117.49706 * 107.48903 * 20 19 17 22 22 C 1.52997 * 117.50289 * 252.50956 * 20 19 17 23 23 C 1.53001 * 117.50103 * 197.24750 * 22 20 19 24 24 C 1.52996 * 117.49780 * 128.62173 * 22 20 19 25 25 H 1.08993 * 109.47303 * 300.00079 * 1 2 3 26 26 H 1.09005 * 109.47135 * 60.00425 * 1 2 3 27 27 H 1.09001 * 109.47384 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47735 * 59.99848 * 3 2 1 29 29 H 1.09002 * 109.46800 * 299.99191 * 3 2 1 30 30 H 1.08999 * 109.47673 * 306.64587 * 4 3 2 31 31 H 1.09005 * 109.46866 * 186.64303 * 4 3 2 32 32 H 1.09004 * 109.46722 * 184.34437 * 6 5 4 33 33 H 1.08996 * 109.47135 * 64.34388 * 6 5 4 34 34 H 0.96995 * 119.99453 * 179.97438 * 10 9 7 35 35 H 1.09006 * 109.47094 * 319.76678 * 15 5 4 36 36 H 1.09001 * 109.47222 * 79.76369 * 15 5 4 37 37 H 1.09002 * 109.46952 * 303.83521 * 16 15 5 38 38 H 1.08999 * 109.46856 * 63.83241 * 16 15 5 39 39 H 1.09002 * 117.50290 * 214.98061 * 19 17 16 40 40 H 1.09005 * 117.49662 * 359.97438 * 19 17 16 41 41 H 1.09004 * 115.54635 * 342.95366 * 22 20 19 42 42 H 1.08997 * 117.49775 * 359.97438 * 23 22 20 43 43 H 1.08995 * 117.49639 * 145.02194 * 23 22 20 44 44 H 1.09009 * 117.49563 * 214.97876 * 24 22 20 45 45 H 1.08993 * 117.50316 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9807 0.5984 -1.2706 6 6 3.7472 -0.8518 -1.2920 7 6 4.4244 -1.4872 -0.1051 8 1 5.0417 -0.8889 0.5487 9 6 4.2559 -2.8324 0.1462 10 7 4.8473 -3.3870 1.1818 11 14 3.1876 -3.8671 -0.9841 12 1 1.7869 -3.8531 -0.4911 13 1 3.2342 -3.3071 -2.3587 14 1 3.6927 -5.2635 -1.0011 15 6 5.3937 0.9079 -1.5268 16 6 5.6922 0.7326 -3.0171 17 6 7.1838 0.9618 -3.2689 18 1 7.6763 1.6499 -2.5818 19 6 8.0018 -0.2208 -3.7916 20 6 7.6655 0.9471 -4.7210 21 1 8.4751 1.6258 -4.9896 22 6 6.6188 0.7045 -5.8102 23 6 6.5661 1.6973 -6.9731 24 6 5.4625 1.7011 -5.9132 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8489 0.5446 0.8254 31 1 3.9782 2.1736 0.1195 32 1 4.1555 -1.2720 -2.2112 33 1 2.6760 -1.0480 -1.2472 34 1 4.7284 -4.3332 1.3587 35 1 5.5991 1.9375 -1.2338 36 1 6.0243 0.2328 -0.9481 37 1 5.4227 -0.2776 -3.3253 38 1 5.1117 1.4547 -3.5912 39 1 9.0326 -0.3105 -3.4488 40 1 7.4774 -1.1622 -3.9558 41 1 6.4032 -0.3411 -6.0304 42 1 7.2769 2.5236 -6.9620 43 1 6.3159 1.3050 -7.9587 44 1 4.4863 1.3113 -6.2018 45 1 5.4478 2.5299 -5.2055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714818565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:01 Heat of formation + Delta-G solvation = 5.735024 kcal Electronic energy + Delta-G solvation = -21303.179349 eV Core-core repulsion = 18322.557453 eV Total energy + Delta-G solvation = -2980.621896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.86968 -37.75346 -36.20846 -35.02939 -32.26725 -30.63593 -28.79786 -26.70959 -25.41899 -23.60168 -22.97186 -22.35053 -21.92983 -20.75198 -19.29099 -18.91562 -16.89245 -15.97638 -15.60318 -15.43569 -15.25317 -14.59380 -14.36878 -14.17840 -13.89383 -13.61397 -13.04349 -12.62563 -12.30808 -12.23127 -11.77729 -11.46290 -11.33507 -11.26685 -11.15506 -11.10177 -10.74014 -10.68704 -10.59764 -10.48944 -10.32989 -10.24288 -9.90348 -9.70319 -9.38559 -9.35175 -9.14857 -8.97182 -8.38382 -7.05747 -5.94907 -3.89881 3.39861 3.45348 3.50674 3.74490 4.12851 4.45022 4.55324 4.66167 4.82376 4.99349 5.06345 5.27121 5.32540 5.41694 5.48055 5.57974 5.61152 5.67141 5.70455 5.74685 5.85900 5.89505 5.95785 5.99143 6.05148 6.05646 6.10109 6.15885 6.23112 6.29559 6.35997 6.40496 6.43761 6.51933 6.86429 6.89177 6.99731 7.15786 7.48386 7.76574 7.84643 8.21494 8.29749 8.60977 9.07100 9.70715 11.18741 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.005857 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.785471 B = 4779.248281 C = 5547.966107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.074 3.926 4 C 0.052 3.948 5 N -0.533 5.533 6 C 0.151 3.849 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.072 3.928 10 N -0.907 5.907 11 Si 0.879 3.121 12 H -0.277 1.277 13 H -0.267 1.267 14 H -0.293 1.293 15 C 0.058 3.942 16 C -0.078 4.078 17 C -0.134 4.134 18 H 0.098 0.902 19 C -0.171 4.171 20 C -0.129 4.129 21 H 0.099 0.901 22 C -0.117 4.117 23 C -0.185 4.185 24 C -0.170 4.170 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.050 0.950 34 H 0.260 0.740 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 10.884 -10.350 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C -0.003 4.003 4 C -0.077 4.077 5 N -0.256 5.256 6 C 0.024 3.976 7 C -0.569 4.569 8 H 0.088 0.912 9 C -0.129 4.129 10 N -0.546 5.546 11 Si 0.707 3.293 12 H -0.202 1.202 13 H -0.192 1.192 14 H -0.219 1.219 15 C -0.070 4.070 16 C -0.116 4.116 17 C -0.153 4.153 18 H 0.116 0.884 19 C -0.208 4.208 20 C -0.148 4.148 21 H 0.117 0.883 22 C -0.135 4.135 23 C -0.222 4.222 24 C -0.207 4.207 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.570 10.761 -10.637 15.142 hybrid contribution -0.218 -0.878 0.254 0.940 sum -0.788 9.883 -10.383 14.356 Atomic orbital electron populations 1.22660 0.83397 1.01997 0.98768 1.88256 1.17476 1.27207 1.94871 1.22504 0.94660 0.84794 0.98333 1.22091 0.92583 0.98593 0.94396 1.62424 1.17163 1.15143 1.30883 1.20349 0.98013 0.83233 0.95998 1.21573 1.29803 0.94547 1.10955 0.91197 1.24874 0.95263 0.97903 0.94851 1.69938 1.44446 1.12000 1.28230 0.86796 0.81247 0.79167 0.82091 1.20243 1.19162 1.21904 1.21977 0.90574 0.98899 0.95559 1.21127 0.91488 1.02230 0.96730 1.22390 0.96913 1.01023 0.94949 0.88352 1.23096 1.00699 0.93626 1.03368 1.21789 0.99757 1.02592 0.90616 0.88336 1.21647 0.98653 0.96047 0.97140 1.22973 1.02900 1.02167 0.94111 1.22957 0.93787 1.02288 1.01684 0.95032 0.94911 0.90407 0.94487 0.93798 0.91203 0.91919 0.96388 0.93205 0.93058 0.93356 0.93157 0.91643 0.91338 0.89232 0.88626 0.87974 0.89163 0.89269 0.88952 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -7.37 7.98 -35.23 -0.28 -7.65 16 3 C 0.07 1.31 6.26 37.16 0.23 1.54 16 4 C 0.05 1.01 5.35 -3.82 -0.02 0.99 16 5 N -0.53 -11.10 4.56 -236.06 -1.08 -12.18 16 6 C 0.15 3.70 3.74 -4.98 -0.02 3.68 16 7 C -0.53 -14.97 7.68 -34.44 -0.26 -15.24 16 8 H 0.07 2.14 6.39 -52.49 -0.34 1.80 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.91 -28.26 13.96 55.43 0.77 -27.49 16 11 Si 0.88 22.51 27.37 -169.99 -4.65 17.85 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.61 6.69 56.52 0.38 -6.23 16 14 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 15 C 0.06 1.10 4.81 -3.82 -0.02 1.08 16 16 C -0.08 -1.30 4.61 -26.74 -0.12 -1.42 16 17 C -0.13 -1.93 5.72 -90.62 -0.52 -2.45 16 18 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 19 C -0.17 -2.40 9.90 -26.73 -0.26 -2.66 16 20 C -0.13 -1.63 5.87 -90.62 -0.53 -2.16 16 21 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 22 C -0.12 -1.43 5.25 -90.62 -0.48 -1.91 16 23 C -0.18 -1.92 10.25 -26.73 -0.27 -2.19 16 24 C -0.17 -1.99 8.44 -26.73 -0.23 -2.21 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.62 5.89 -51.93 -0.31 1.31 16 31 H 0.06 1.04 7.58 -51.93 -0.39 0.65 16 32 H 0.02 0.46 6.03 -51.93 -0.31 0.15 16 33 H 0.05 1.28 4.91 -51.93 -0.25 1.03 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.05 0.81 7.59 -51.93 -0.39 0.42 16 36 H 0.05 1.11 6.67 -51.93 -0.35 0.76 16 37 H 0.06 1.24 6.44 -51.93 -0.33 0.90 16 38 H 0.07 1.08 5.63 -51.93 -0.29 0.79 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.10 1.45 8.03 -51.93 -0.42 1.03 16 41 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 45 H 0.10 1.16 7.31 -51.93 -0.38 0.78 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -31.06 347.54 -9.48 -40.55 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.99 Total: 3.03 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.49 Total: -19.35 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: -0.30 Total: -39.67 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.28 Total: -7.65 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.65 Total: 17.85 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.06 -9.48 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714818565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.282 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds