Wall clock time and date at job start Mon Mar 30 2020 08:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99890 * 2 1 4 4 C 1.53002 * 109.46839 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47208 * 66.64671 * 4 3 2 6 6 C 1.46901 * 110.99684 * 283.12906 * 5 4 3 7 7 C 1.50698 * 109.47232 * 304.34144 * 6 5 4 8 8 H 1.07999 * 120.00280 * 354.86267 * 7 6 5 9 9 C 1.37881 * 119.99740 * 174.86669 * 7 6 5 10 10 N 1.31520 * 119.99575 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00206 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47040 * 270.00296 * 11 9 7 13 13 H 1.48498 * 109.46949 * 30.00253 * 11 9 7 14 14 H 1.48503 * 109.46975 * 149.99966 * 11 9 7 15 15 C 1.46902 * 111.00309 * 159.17663 * 5 4 3 16 16 C 1.52997 * 109.47451 * 199.76687 * 15 5 4 17 17 C 1.52994 * 109.47168 * 183.83450 * 16 15 5 18 18 H 1.09000 * 115.55338 * 330.71867 * 17 16 15 19 19 C 1.53000 * 117.49985 * 116.39250 * 17 16 15 20 20 C 1.52994 * 60.00184 * 107.48610 * 19 17 16 21 21 H 1.09003 * 117.49706 * 107.48903 * 20 19 17 22 22 C 1.52997 * 117.50289 * 252.50956 * 20 19 17 23 23 C 1.53001 * 117.50103 * 197.24750 * 22 20 19 24 24 C 1.52996 * 117.49780 * 128.62173 * 22 20 19 25 25 H 1.08993 * 109.47303 * 300.00079 * 1 2 3 26 26 H 1.09005 * 109.47135 * 60.00425 * 1 2 3 27 27 H 1.09001 * 109.47384 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47735 * 59.99848 * 3 2 1 29 29 H 1.09002 * 109.46800 * 299.99191 * 3 2 1 30 30 H 1.08999 * 109.47673 * 306.64587 * 4 3 2 31 31 H 1.09005 * 109.46866 * 186.64303 * 4 3 2 32 32 H 1.09004 * 109.46722 * 184.34437 * 6 5 4 33 33 H 1.08996 * 109.47135 * 64.34388 * 6 5 4 34 34 H 0.96995 * 119.99453 * 179.97438 * 10 9 7 35 35 H 1.09006 * 109.47094 * 319.76678 * 15 5 4 36 36 H 1.09001 * 109.47222 * 79.76369 * 15 5 4 37 37 H 1.09002 * 109.46952 * 303.83521 * 16 15 5 38 38 H 1.08999 * 109.46856 * 63.83241 * 16 15 5 39 39 H 1.09002 * 117.50290 * 214.98061 * 19 17 16 40 40 H 1.09005 * 117.49662 * 359.97438 * 19 17 16 41 41 H 1.09004 * 115.54635 * 342.95366 * 22 20 19 42 42 H 1.08997 * 117.49775 * 359.97438 * 23 22 20 43 43 H 1.08995 * 117.49639 * 145.02194 * 23 22 20 44 44 H 1.09009 * 117.49563 * 214.97876 * 24 22 20 45 45 H 1.08993 * 117.50316 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9807 0.5984 -1.2706 6 6 3.7472 -0.8518 -1.2920 7 6 4.4244 -1.4872 -0.1051 8 1 5.0417 -0.8889 0.5487 9 6 4.2559 -2.8324 0.1462 10 7 4.8473 -3.3870 1.1818 11 14 3.1876 -3.8671 -0.9841 12 1 1.7869 -3.8531 -0.4911 13 1 3.2342 -3.3071 -2.3587 14 1 3.6927 -5.2635 -1.0011 15 6 5.3937 0.9079 -1.5268 16 6 5.6922 0.7326 -3.0171 17 6 7.1838 0.9618 -3.2689 18 1 7.6763 1.6499 -2.5818 19 6 8.0018 -0.2208 -3.7916 20 6 7.6655 0.9471 -4.7210 21 1 8.4751 1.6258 -4.9896 22 6 6.6188 0.7045 -5.8102 23 6 6.5661 1.6973 -6.9731 24 6 5.4625 1.7011 -5.9132 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8489 0.5446 0.8254 31 1 3.9782 2.1736 0.1195 32 1 4.1555 -1.2720 -2.2112 33 1 2.6760 -1.0480 -1.2472 34 1 4.7284 -4.3332 1.3587 35 1 5.5991 1.9375 -1.2338 36 1 6.0243 0.2328 -0.9481 37 1 5.4227 -0.2776 -3.3253 38 1 5.1117 1.4547 -3.5912 39 1 9.0326 -0.3105 -3.4488 40 1 7.4774 -1.1622 -3.9558 41 1 6.4032 -0.3411 -6.0304 42 1 7.2769 2.5236 -6.9620 43 1 6.3159 1.3050 -7.9587 44 1 4.4863 1.3113 -6.2018 45 1 5.4478 2.5299 -5.2055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714818565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:01 Heat of formation + Delta-G solvation = -13.206696 kcal Electronic energy + Delta-G solvation = -21304.000723 eV Core-core repulsion = 18322.557453 eV Total energy + Delta-G solvation = -2981.443270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.01903 -39.21299 -37.70855 -36.10557 -34.47697 -32.05362 -30.61802 -28.32732 -26.83064 -24.85609 -24.52517 -23.64416 -22.98834 -21.94459 -21.10075 -20.00635 -19.00065 -17.39911 -17.08258 -16.60856 -16.39306 -16.29374 -15.83418 -15.65960 -15.53456 -14.84477 -14.59421 -14.28967 -13.76976 -13.74479 -13.36106 -13.01897 -12.72313 -12.66550 -12.37334 -12.32188 -12.26878 -12.22670 -12.15655 -11.85535 -11.73915 -11.62330 -11.47908 -11.35718 -11.29402 -10.72060 -10.50274 -10.31214 -10.23124 -8.87841 -8.23928 -6.22230 1.34013 1.35800 1.46749 2.38828 2.74481 3.10519 3.13649 3.15853 3.33405 3.69667 3.98229 4.02689 4.19452 4.26395 4.31387 4.35210 4.45146 4.48944 4.54257 4.59060 4.61111 4.65933 4.72117 4.75983 4.86096 4.87740 4.88610 4.96249 5.04300 5.09501 5.12692 5.24154 5.25276 5.30079 5.34191 5.39388 5.40861 5.45253 5.59368 5.66178 6.19814 6.44370 6.47573 6.63270 6.81046 7.41667 8.92991 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.005857 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.785471 B = 4779.248281 C = 5547.966107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.076 3.924 4 C 0.049 3.951 5 N -0.525 5.525 6 C 0.166 3.834 7 C -0.520 4.520 8 H 0.032 0.968 9 C 0.012 3.988 10 N -0.953 5.953 11 Si 0.941 3.059 12 H -0.269 1.269 13 H -0.254 1.254 14 H -0.288 1.288 15 C 0.060 3.940 16 C -0.065 4.065 17 C -0.147 4.147 18 H 0.108 0.892 19 C -0.185 4.185 20 C -0.103 4.103 21 H 0.119 0.881 22 C -0.138 4.138 23 C -0.163 4.163 24 C -0.176 4.176 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.095 0.905 32 H 0.011 0.989 33 H 0.047 0.953 34 H 0.261 0.739 35 H 0.075 0.925 36 H 0.010 0.990 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 12.742 -12.458 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.001 4.001 4 C -0.079 4.079 5 N -0.248 5.248 6 C 0.038 3.962 7 C -0.559 4.559 8 H 0.050 0.950 9 C -0.185 4.185 10 N -0.595 5.595 11 Si 0.766 3.234 12 H -0.194 1.194 13 H -0.177 1.177 14 H -0.214 1.214 15 C -0.068 4.068 16 C -0.102 4.102 17 C -0.166 4.166 18 H 0.126 0.874 19 C -0.222 4.222 20 C -0.121 4.121 21 H 0.137 0.863 22 C -0.157 4.157 23 C -0.200 4.200 24 C -0.213 4.213 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.113 0.887 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.452 12.644 -12.757 18.020 hybrid contribution 0.084 -1.371 0.973 1.683 sum -1.369 11.273 -11.784 16.365 Atomic orbital electron populations 1.22829 0.81077 1.02551 1.00716 1.88163 1.20219 1.28939 1.95264 1.22556 0.92807 0.84312 1.00379 1.22205 0.94741 0.99031 0.91917 1.62471 1.18215 1.12560 1.31527 1.20076 0.97070 0.85391 0.93652 1.21787 1.28584 0.94297 1.11189 0.94973 1.25730 0.96893 0.99398 0.96461 1.70081 1.46585 1.12426 1.30420 0.85799 0.79539 0.77469 0.80605 1.19388 1.17740 1.21428 1.22052 0.88785 0.99323 0.96685 1.20965 0.93475 1.00860 0.94920 1.22356 0.95451 1.01729 0.97043 0.87386 1.23121 1.01026 0.93238 1.04864 1.21844 0.99698 1.01152 0.89406 0.86270 1.21669 0.99381 0.96059 0.98558 1.23058 1.01825 1.01251 0.93856 1.22977 0.93891 1.01885 1.02566 0.93068 0.92865 0.90674 0.92006 0.91921 0.95689 0.88708 0.97118 0.93480 0.93008 0.90657 0.97130 0.94475 0.89956 0.88137 0.90529 0.89078 0.87796 0.88078 0.89074 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.96 16 2 O -0.41 -16.21 7.98 -148.98 -1.19 -17.40 16 3 C 0.08 2.54 6.26 71.98 0.45 2.99 16 4 C 0.05 1.91 5.35 86.30 0.46 2.37 16 5 N -0.53 -21.75 4.56 -900.77 -4.11 -25.86 16 6 C 0.17 8.24 3.74 85.56 0.32 8.56 16 7 C -0.52 -30.49 7.68 25.60 0.20 -30.30 16 8 H 0.03 2.09 6.39 -2.91 -0.02 2.07 16 9 C 0.01 0.71 5.47 84.65 0.46 1.17 16 10 N -0.95 -61.60 13.96 21.45 0.30 -61.30 16 11 Si 0.94 47.08 27.37 68.60 1.88 48.96 16 12 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.25 -12.02 6.69 99.48 0.67 -11.35 16 14 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 15 C 0.06 2.26 4.81 86.30 0.42 2.68 16 16 C -0.06 -2.12 4.61 30.59 0.14 -1.98 16 17 C -0.15 -4.11 5.72 -10.80 -0.06 -4.17 16 18 H 0.11 2.81 8.07 -2.39 -0.02 2.79 16 19 C -0.19 -5.16 9.90 30.59 0.30 -4.86 16 20 C -0.10 -2.41 5.87 -10.80 -0.06 -2.47 16 21 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 22 C -0.14 -3.16 5.25 -10.80 -0.06 -3.21 16 23 C -0.16 -2.90 10.25 30.60 0.31 -2.58 16 24 C -0.18 -3.72 8.44 30.59 0.26 -3.47 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.02 1.19 5.89 -2.39 -0.01 1.18 16 31 H 0.09 2.99 7.58 -2.38 -0.02 2.97 16 32 H 0.01 0.55 6.03 -2.39 -0.01 0.54 16 33 H 0.05 2.41 4.91 -2.39 -0.01 2.40 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.08 2.43 7.59 -2.38 -0.02 2.41 16 36 H 0.01 0.48 6.67 -2.39 -0.02 0.46 16 37 H 0.04 1.42 6.44 -2.39 -0.02 1.41 16 38 H 0.08 2.46 5.63 -2.39 -0.01 2.45 16 39 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.08 2.41 8.03 -2.38 -0.02 2.39 16 41 H 0.09 2.27 8.14 -2.38 -0.02 2.26 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.10 2.06 7.31 -2.39 -0.02 2.04 16 Total: -1.00 -69.56 347.54 2.17 -67.39 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.90 Total: 21.54 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 4.39 Total: -33.32 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -3.81 Total: -87.16 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.19 Total: -17.40 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.88 Total: 48.96 kcal Total: -69.56 2.17 -67.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714818565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.185 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds