Wall clock time and date at job start Mon Mar 30 2020 08:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99838 * 2 1 4 4 C 1.52997 * 109.47423 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47261 * 63.94007 * 4 3 2 6 6 C 1.46904 * 110.99981 * 200.12509 * 5 4 3 7 7 C 1.50700 * 109.47368 * 66.04522 * 6 5 4 8 8 H 1.08001 * 119.99553 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00107 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99846 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 119.99950 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47508 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47137 * 119.99945 * 11 9 7 14 14 H 1.48501 * 109.47141 * 239.99677 * 11 9 7 15 15 C 1.46901 * 110.99958 * 76.16823 * 5 4 3 16 16 C 1.53001 * 109.46745 * 196.85468 * 15 5 4 17 17 C 1.53005 * 109.46606 * 174.35006 * 16 15 5 18 18 H 1.09002 * 115.54883 * 330.66954 * 17 16 15 19 19 C 1.53001 * 117.50010 * 116.38014 * 17 16 15 20 20 C 1.53000 * 117.49802 * 185.00264 * 17 16 15 21 21 H 1.08997 * 117.49575 * 0.02562 * 20 17 16 22 22 C 1.53000 * 117.50011 * 145.01514 * 20 17 16 23 23 C 1.52998 * 117.50139 * 248.61978 * 22 20 17 24 24 C 1.52998 * 117.49717 * 179.97438 * 22 20 17 25 25 H 1.09005 * 109.46798 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47257 * 299.99769 * 1 2 3 27 27 H 1.08999 * 109.47162 * 60.00618 * 1 2 3 28 28 H 1.09006 * 109.47624 * 59.99688 * 3 2 1 29 29 H 1.09006 * 109.47452 * 300.00185 * 3 2 1 30 30 H 1.09002 * 109.46836 * 303.93554 * 4 3 2 31 31 H 1.09004 * 109.47152 * 183.94399 * 4 3 2 32 32 H 1.08994 * 109.46769 * 186.04747 * 6 5 4 33 33 H 1.09001 * 109.46725 * 306.04334 * 6 5 4 34 34 H 0.96997 * 120.00076 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47220 * 316.85468 * 15 5 4 36 36 H 1.09002 * 109.46717 * 76.85503 * 15 5 4 37 37 H 1.08998 * 109.47158 * 294.34521 * 16 15 5 38 38 H 1.08991 * 109.47229 * 54.35298 * 16 15 5 39 39 H 1.08997 * 117.49709 * 214.97436 * 19 17 16 40 40 H 1.09004 * 117.49555 * 359.97438 * 19 17 16 41 41 H 1.09003 * 115.54572 * 34.33504 * 22 20 17 42 42 H 1.08997 * 117.49604 * 0.02562 * 23 22 20 43 43 H 1.08996 * 117.49585 * 145.02023 * 23 22 20 44 44 H 1.09000 * 117.50266 * 214.98076 * 24 22 20 45 45 H 1.09007 * 117.49820 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9750 0.5398 -1.2451 6 6 5.3246 -0.0218 -1.0987 7 6 5.2933 -1.1510 -0.1013 8 1 4.3639 -1.4240 0.3764 9 6 6.4513 -1.8351 0.2021 10 7 7.5831 -1.5023 -0.3792 11 14 6.4127 -3.2343 1.4390 12 1 5.0281 -3.4083 1.9466 13 1 6.8606 -4.4885 0.7817 14 1 7.3189 -2.9185 2.5722 15 6 3.9147 1.4779 -2.3740 16 6 3.9647 0.6973 -3.6889 17 6 3.7605 1.6592 -4.8611 18 1 3.1519 2.5380 -4.6475 19 6 4.9164 1.8232 -5.8500 20 6 3.6599 1.0538 -6.2626 21 1 3.7387 -0.0299 -6.3494 22 6 2.7131 1.7283 -7.2573 23 6 1.4567 0.9589 -7.6699 24 6 2.6130 1.1232 -8.6589 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6885 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8526 0.5840 0.8518 31 1 3.9785 2.1782 0.0700 32 1 5.6682 -0.3975 -2.0624 33 1 6.0049 0.7542 -0.7478 34 1 8.3978 -1.9838 -0.1661 35 1 2.9865 2.0470 -2.3243 36 1 4.7628 2.1609 -2.3244 37 1 4.9342 0.2085 -3.7847 38 1 3.1762 -0.0552 -3.6949 39 1 5.0684 2.8100 -6.2873 40 1 5.8224 1.2460 -5.6653 41 1 2.6342 2.8120 -7.1703 42 1 1.3044 -0.0277 -7.2323 43 1 0.5508 1.5363 -7.8543 44 1 2.4675 1.8086 -9.4939 45 1 3.2220 0.2447 -8.8725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714818574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:08 Heat of formation + Delta-G solvation = -3.250391 kcal Electronic energy + Delta-G solvation = -20571.063774 eV Core-core repulsion = 17590.052242 eV Total energy + Delta-G solvation = -2981.011533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.71127 -37.75851 -36.41519 -35.31949 -32.51287 -30.52733 -28.86905 -26.43014 -25.52357 -23.67807 -22.89225 -22.39095 -22.21753 -20.29558 -20.05336 -19.44423 -16.47527 -15.92938 -15.71900 -15.58004 -15.28874 -14.73823 -14.50223 -14.12906 -13.72529 -13.57175 -13.16668 -12.78857 -12.55348 -12.04769 -11.77625 -11.72322 -11.53580 -11.40255 -11.19747 -11.13750 -10.98506 -10.84168 -10.78375 -10.64782 -10.56514 -10.38279 -10.06049 -9.64973 -9.48186 -9.21168 -9.20332 -8.97410 -8.34815 -7.10465 -5.94176 -3.93640 3.36972 3.44319 3.51366 3.51855 4.22329 4.29774 4.42030 4.52067 4.81581 4.86691 4.96899 5.16645 5.26495 5.32159 5.38776 5.41237 5.47141 5.53893 5.56319 5.63206 5.69445 5.79180 5.80375 5.85191 5.89823 5.92244 5.97301 6.02755 6.08503 6.14696 6.26719 6.33330 6.34449 6.39038 6.67814 6.77899 6.86456 7.37040 7.42463 7.70149 7.94590 8.21153 8.30966 8.67531 9.16994 9.70255 11.16891 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.004673 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.760628 B = 5990.657646 C = 7209.848070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.071 3.929 4 C 0.060 3.940 5 N -0.527 5.527 6 C 0.193 3.807 7 C -0.501 4.501 8 H 0.068 0.932 9 C 0.053 3.947 10 N -0.902 5.902 11 Si 0.894 3.106 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.287 1.287 15 C 0.060 3.940 16 C -0.082 4.082 17 C -0.134 4.134 18 H 0.098 0.902 19 C -0.174 4.174 20 C -0.126 4.126 21 H 0.103 0.897 22 C -0.118 4.118 23 C -0.178 4.178 24 C -0.181 4.181 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.033 0.967 33 H -0.013 1.013 34 H 0.259 0.741 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 8.216 -9.643 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.007 4.007 4 C -0.069 4.069 5 N -0.251 5.251 6 C 0.068 3.932 7 C -0.539 4.539 8 H 0.086 0.914 9 C -0.147 4.147 10 N -0.542 5.542 11 Si 0.723 3.277 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.213 1.213 15 C -0.069 4.069 16 C -0.119 4.119 17 C -0.153 4.153 18 H 0.117 0.883 19 C -0.211 4.211 20 C -0.144 4.144 21 H 0.121 0.879 22 C -0.136 4.136 23 C -0.215 4.215 24 C -0.218 4.218 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.005 0.995 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.626 7.604 -9.735 16.963 hybrid contribution 0.466 0.212 0.739 0.899 sum -11.160 7.816 -8.997 16.327 Atomic orbital electron populations 1.22663 0.83047 1.02068 0.98836 1.88134 1.17593 1.27354 1.94982 1.22617 0.95160 0.84653 0.98226 1.22010 0.91582 0.97372 0.95914 1.62042 1.29749 1.31708 1.01645 1.19758 0.82078 0.93872 0.97531 1.21299 0.94541 1.15260 1.22836 0.91385 1.24980 0.95463 0.97581 0.96692 1.69977 0.99155 1.41581 1.43510 0.86486 0.78066 0.82145 0.81038 1.19544 1.21148 1.21294 1.22007 0.98865 0.93990 0.91997 1.21131 1.02752 0.96795 0.91247 1.22428 1.01405 1.01150 0.90283 0.88349 1.23111 0.92904 1.01357 1.03762 1.21820 0.98545 0.98349 0.95666 0.87872 1.21714 0.98504 0.98066 0.95300 1.22934 0.92507 1.02296 1.03809 1.22938 1.02571 1.03425 0.92858 0.90203 0.95105 0.94868 0.94384 0.94307 0.88726 0.94860 0.94924 0.99492 0.93177 0.92721 0.96003 0.91379 0.90961 0.89315 0.88565 0.88154 0.88623 0.89058 0.89107 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.36 -6.78 10.63 -35.23 -0.37 -7.15 16 3 C 0.07 1.18 6.12 37.16 0.23 1.41 16 4 C 0.06 1.18 5.19 -3.83 -0.02 1.16 16 5 N -0.53 -11.55 4.31 -236.07 -1.02 -12.57 16 6 C 0.19 5.07 4.56 -4.97 -0.02 5.05 16 7 C -0.50 -14.35 8.23 -34.44 -0.28 -14.63 16 8 H 0.07 1.98 7.32 -52.49 -0.38 1.60 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 11 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 15 C 0.06 1.10 4.75 -3.82 -0.02 1.08 16 16 C -0.08 -1.39 5.47 -26.73 -0.15 -1.54 16 17 C -0.13 -1.85 5.46 -90.62 -0.49 -2.34 16 18 H 0.10 1.27 8.07 -51.93 -0.42 0.86 16 19 C -0.17 -2.24 9.90 -26.73 -0.26 -2.50 16 20 C -0.13 -1.57 5.57 -90.62 -0.50 -2.08 16 21 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 22 C -0.12 -1.26 5.85 -90.62 -0.53 -1.79 16 23 C -0.18 -1.76 10.25 -26.71 -0.27 -2.03 16 24 C -0.18 -1.72 10.25 -26.71 -0.27 -1.99 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.60 6.69 -51.93 -0.35 0.25 16 30 H 0.09 2.11 6.58 -51.93 -0.34 1.77 16 31 H 0.03 0.61 7.99 -51.93 -0.42 0.19 16 32 H 0.03 0.91 6.56 -51.93 -0.34 0.57 16 33 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.05 0.89 6.50 -51.93 -0.34 0.55 16 36 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 37 H 0.07 1.30 6.58 -51.93 -0.34 0.96 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.10 1.31 8.03 -51.93 -0.42 0.89 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -30.81 363.64 -10.18 -40.98 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.39 Total: -0.24 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -1.59 Total: -17.23 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: -0.28 Total: -39.01 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.37 Total: -7.15 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.81 -10.18 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714818574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.734 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds