Wall clock time and date at job start Mon Mar 30 2020 08:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99838 * 2 1 4 4 C 1.52997 * 109.47423 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47261 * 63.94007 * 4 3 2 6 6 C 1.46904 * 110.99981 * 200.12509 * 5 4 3 7 7 C 1.50700 * 109.47368 * 66.04522 * 6 5 4 8 8 H 1.08001 * 119.99553 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00107 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99846 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 119.99950 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47508 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47137 * 119.99945 * 11 9 7 14 14 H 1.48501 * 109.47141 * 239.99677 * 11 9 7 15 15 C 1.46901 * 110.99958 * 76.16823 * 5 4 3 16 16 C 1.53001 * 109.46745 * 196.85468 * 15 5 4 17 17 C 1.53005 * 109.46606 * 174.35006 * 16 15 5 18 18 H 1.09002 * 115.54883 * 330.66954 * 17 16 15 19 19 C 1.53001 * 117.50010 * 116.38014 * 17 16 15 20 20 C 1.53000 * 117.49802 * 185.00264 * 17 16 15 21 21 H 1.08997 * 117.49575 * 0.02562 * 20 17 16 22 22 C 1.53000 * 117.50011 * 145.01514 * 20 17 16 23 23 C 1.52998 * 117.50139 * 248.61978 * 22 20 17 24 24 C 1.52998 * 117.49717 * 179.97438 * 22 20 17 25 25 H 1.09005 * 109.46798 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47257 * 299.99769 * 1 2 3 27 27 H 1.08999 * 109.47162 * 60.00618 * 1 2 3 28 28 H 1.09006 * 109.47624 * 59.99688 * 3 2 1 29 29 H 1.09006 * 109.47452 * 300.00185 * 3 2 1 30 30 H 1.09002 * 109.46836 * 303.93554 * 4 3 2 31 31 H 1.09004 * 109.47152 * 183.94399 * 4 3 2 32 32 H 1.08994 * 109.46769 * 186.04747 * 6 5 4 33 33 H 1.09001 * 109.46725 * 306.04334 * 6 5 4 34 34 H 0.96997 * 120.00076 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47220 * 316.85468 * 15 5 4 36 36 H 1.09002 * 109.46717 * 76.85503 * 15 5 4 37 37 H 1.08998 * 109.47158 * 294.34521 * 16 15 5 38 38 H 1.08991 * 109.47229 * 54.35298 * 16 15 5 39 39 H 1.08997 * 117.49709 * 214.97436 * 19 17 16 40 40 H 1.09004 * 117.49555 * 359.97438 * 19 17 16 41 41 H 1.09003 * 115.54572 * 34.33504 * 22 20 17 42 42 H 1.08997 * 117.49604 * 0.02562 * 23 22 20 43 43 H 1.08996 * 117.49585 * 145.02023 * 23 22 20 44 44 H 1.09000 * 117.50266 * 214.98076 * 24 22 20 45 45 H 1.09007 * 117.49820 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9750 0.5398 -1.2451 6 6 5.3246 -0.0218 -1.0987 7 6 5.2933 -1.1510 -0.1013 8 1 4.3639 -1.4240 0.3764 9 6 6.4513 -1.8351 0.2021 10 7 7.5831 -1.5023 -0.3792 11 14 6.4127 -3.2343 1.4390 12 1 5.0281 -3.4083 1.9466 13 1 6.8606 -4.4885 0.7817 14 1 7.3189 -2.9185 2.5722 15 6 3.9147 1.4779 -2.3740 16 6 3.9647 0.6973 -3.6889 17 6 3.7605 1.6592 -4.8611 18 1 3.1519 2.5380 -4.6475 19 6 4.9164 1.8232 -5.8500 20 6 3.6599 1.0538 -6.2626 21 1 3.7387 -0.0299 -6.3494 22 6 2.7131 1.7283 -7.2573 23 6 1.4567 0.9589 -7.6699 24 6 2.6130 1.1232 -8.6589 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6885 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8526 0.5840 0.8518 31 1 3.9785 2.1782 0.0700 32 1 5.6682 -0.3975 -2.0624 33 1 6.0049 0.7542 -0.7478 34 1 8.3978 -1.9838 -0.1661 35 1 2.9865 2.0470 -2.3243 36 1 4.7628 2.1609 -2.3244 37 1 4.9342 0.2085 -3.7847 38 1 3.1762 -0.0552 -3.6949 39 1 5.0684 2.8100 -6.2873 40 1 5.8224 1.2460 -5.6653 41 1 2.6342 2.8120 -7.1703 42 1 1.3044 -0.0277 -7.2323 43 1 0.5508 1.5363 -7.8543 44 1 2.4675 1.8086 -9.4939 45 1 3.2220 0.2447 -8.8725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714818574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:08 Heat of formation + Delta-G solvation = -21.009208 kcal Electronic energy + Delta-G solvation = -20571.833855 eV Core-core repulsion = 17590.052242 eV Total energy + Delta-G solvation = -2981.781613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.82675 -39.10804 -37.80908 -36.41941 -34.68230 -31.92297 -30.62208 -28.13259 -26.84400 -24.85543 -24.36785 -23.87893 -23.14278 -21.57498 -21.23874 -20.79795 -18.56199 -17.29949 -17.10842 -16.65185 -16.56542 -16.31819 -15.86467 -15.59587 -15.26647 -14.86266 -14.57701 -14.20668 -13.86923 -13.78957 -13.44634 -13.04120 -12.83444 -12.65972 -12.57001 -12.43236 -12.36358 -12.21822 -12.17729 -12.04085 -11.96722 -11.83518 -11.46397 -11.32579 -11.16740 -10.65104 -10.55155 -10.40330 -10.16623 -8.89984 -8.17788 -6.25964 1.39620 1.40563 1.55248 2.42228 2.60316 3.06189 3.14317 3.25683 3.29139 3.60754 3.90752 3.96314 4.14034 4.22349 4.25628 4.34763 4.36345 4.37625 4.43228 4.51011 4.56459 4.61571 4.64518 4.68196 4.76483 4.82821 4.85143 4.91607 4.95556 5.04917 5.06410 5.10111 5.21899 5.25717 5.30487 5.32019 5.33870 5.39173 5.49553 5.71266 6.12362 6.37989 6.51831 6.76058 6.91965 7.43156 8.93411 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.004673 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.760628 B = 5990.657646 C = 7209.848070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.079 3.921 4 C 0.056 3.944 5 N -0.536 5.536 6 C 0.211 3.789 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.002 3.998 10 N -0.936 5.936 11 Si 0.965 3.035 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.063 3.937 16 C -0.072 4.072 17 C -0.139 4.139 18 H 0.117 0.883 19 C -0.174 4.174 20 C -0.116 4.116 21 H 0.090 0.910 22 C -0.127 4.127 23 C -0.178 4.178 24 C -0.175 4.175 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.006 0.994 33 H -0.042 1.042 34 H 0.263 0.737 35 H 0.084 0.916 36 H 0.016 0.984 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 9.104 -9.999 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C 0.002 3.998 4 C -0.072 4.072 5 N -0.261 5.261 6 C 0.085 3.915 7 C -0.554 4.554 8 H 0.077 0.923 9 C -0.196 4.196 10 N -0.577 5.577 11 Si 0.790 3.210 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.202 1.202 15 C -0.065 4.065 16 C -0.110 4.110 17 C -0.157 4.157 18 H 0.135 0.865 19 C -0.211 4.211 20 C -0.134 4.134 21 H 0.108 0.892 22 C -0.146 4.146 23 C -0.215 4.215 24 C -0.211 4.211 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.024 0.976 33 H -0.024 1.024 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.034 0.966 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.636 8.504 -10.095 18.978 hybrid contribution 1.059 -0.056 0.834 1.349 sum -12.577 8.448 -9.261 17.757 Atomic orbital electron populations 1.22858 0.80475 1.03106 1.00522 1.88066 1.20532 1.28535 1.95371 1.22549 0.92314 0.84550 1.00402 1.22063 0.94462 0.97061 0.93618 1.61986 1.26579 1.33747 1.03751 1.19357 0.84061 0.92757 0.95368 1.21515 0.94352 1.16112 1.23397 0.92294 1.25857 0.94964 1.00178 0.98579 1.70094 0.99848 1.42878 1.44861 0.85397 0.78279 0.78737 0.78604 1.19097 1.20415 1.20232 1.22091 0.99991 0.93472 0.90987 1.20972 1.00410 0.97134 0.92504 1.22296 1.02749 1.01141 0.89540 0.86543 1.23139 0.92285 1.02266 1.03361 1.21812 0.98633 0.97838 0.95156 0.89202 1.21713 0.98693 0.98569 0.95575 1.23003 0.92951 1.01959 1.03605 1.23017 1.01982 1.03401 0.92743 0.89660 0.93054 0.93392 0.91500 0.92549 0.91975 0.93466 0.97554 1.02434 0.92826 0.89732 0.96571 0.94603 0.92251 0.87266 0.90171 0.86990 0.89464 0.87475 0.87350 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -14.69 10.63 -148.98 -1.58 -16.27 16 3 C 0.08 2.48 6.12 71.98 0.44 2.92 16 4 C 0.06 2.23 5.19 86.30 0.45 2.68 16 5 N -0.54 -24.11 4.31 -900.79 -3.88 -27.99 16 6 C 0.21 11.69 4.56 85.56 0.39 12.08 16 7 C -0.52 -30.60 8.23 25.60 0.21 -30.39 16 8 H 0.06 3.55 7.32 -2.91 -0.02 3.52 16 9 C 0.00 0.10 5.46 84.65 0.46 0.56 16 10 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 11 Si 0.96 46.21 29.54 68.60 2.03 48.24 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 15 C 0.06 2.29 4.75 86.30 0.41 2.70 16 16 C -0.07 -2.55 5.47 30.60 0.17 -2.38 16 17 C -0.14 -3.73 5.46 -10.79 -0.06 -3.79 16 18 H 0.12 2.75 8.07 -2.39 -0.02 2.73 16 19 C -0.17 -4.38 9.90 30.59 0.30 -4.08 16 20 C -0.12 -2.83 5.57 -10.79 -0.06 -2.89 16 21 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 22 C -0.13 -2.47 5.85 -10.79 -0.06 -2.53 16 23 C -0.18 -3.14 10.25 30.61 0.31 -2.82 16 24 C -0.17 -2.94 10.25 30.61 0.31 -2.63 16 25 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.06 1.57 6.69 -2.38 -0.02 1.55 16 30 H 0.06 2.85 6.58 -2.39 -0.02 2.84 16 31 H 0.05 1.71 7.99 -2.38 -0.02 1.69 16 32 H 0.01 0.38 6.56 -2.39 -0.02 0.37 16 33 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 34 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.08 2.59 6.50 -2.39 -0.02 2.58 16 36 H 0.02 0.61 8.04 -2.39 -0.02 0.59 16 37 H 0.04 1.47 6.58 -2.39 -0.02 1.45 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.08 2.27 8.03 -2.38 -0.02 2.25 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -68.49 363.64 2.29 -66.20 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.92 Total: 16.13 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 4.53 Total: -28.66 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -3.59 Total: -85.64 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.58 Total: -16.27 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -68.49 2.29 -66.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714818574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.186 kcal (2) G-P(sol) polarization free energy of solvation -68.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds