Wall clock time and date at job start Mon Mar 30 2020 08:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99393 * 2 1 4 4 C 1.53003 * 109.46753 * 184.72021 * 3 2 1 5 5 N 1.46905 * 109.47389 * 69.29284 * 4 3 2 6 6 C 1.46903 * 110.99958 * 286.22724 * 5 4 3 7 7 C 1.50696 * 109.47200 * 302.64136 * 6 5 4 8 8 H 1.08012 * 120.00045 * 4.44296 * 7 6 5 9 9 C 1.37874 * 120.00252 * 184.44441 * 7 6 5 10 10 N 1.31515 * 119.99835 * 354.84842 * 9 7 6 11 11 Si 1.86792 * 120.00318 * 174.85210 * 9 7 6 12 12 H 1.48504 * 109.47128 * 5.00195 * 11 9 7 13 13 H 1.48504 * 109.47321 * 124.99912 * 11 9 7 14 14 H 1.48505 * 109.47205 * 245.00378 * 11 9 7 15 15 C 1.46901 * 110.99851 * 162.27194 * 5 4 3 16 16 C 1.53001 * 109.46523 * 190.00095 * 15 5 4 17 17 C 1.53000 * 109.46763 * 179.97438 * 16 15 5 18 18 H 1.09006 * 115.54895 * 29.41667 * 17 16 15 19 19 C 1.52998 * 117.50351 * 243.74821 * 17 16 15 20 20 C 1.53001 * 117.49827 * 175.08592 * 17 16 15 21 21 H 1.09000 * 117.49720 * 214.97998 * 20 17 16 22 22 C 1.52993 * 117.50023 * 0.02562 * 20 17 16 23 23 C 1.52997 * 117.49909 * 248.74574 * 22 20 17 24 24 C 1.53000 * 117.49911 * 180.08713 * 22 20 17 25 25 H 1.08999 * 109.46981 * 304.94079 * 1 2 3 26 26 H 1.09002 * 109.47088 * 64.94130 * 1 2 3 27 27 H 1.08999 * 109.46556 * 184.93968 * 1 2 3 28 28 H 1.08999 * 109.47556 * 64.71838 * 3 2 1 29 29 H 1.08997 * 109.47310 * 304.71434 * 3 2 1 30 30 H 1.09004 * 109.47266 * 309.29301 * 4 3 2 31 31 H 1.08994 * 109.47426 * 189.29804 * 4 3 2 32 32 H 1.09002 * 109.46794 * 62.64015 * 6 5 4 33 33 H 1.08995 * 109.46927 * 182.63908 * 6 5 4 34 34 H 0.96997 * 120.00117 * 179.97438 * 10 9 7 35 35 H 1.08998 * 109.47062 * 70.00288 * 15 5 4 36 36 H 1.09002 * 109.47154 * 310.00287 * 15 5 4 37 37 H 1.08998 * 109.47293 * 60.00335 * 16 15 5 38 38 H 1.08992 * 109.47530 * 299.99980 * 16 15 5 39 39 H 1.09003 * 117.49322 * 0.02562 * 19 17 16 40 40 H 1.08996 * 117.50257 * 144.99531 * 19 17 16 41 41 H 1.09003 * 115.54741 * 34.41656 * 22 20 17 42 42 H 1.09002 * 117.50053 * 359.97438 * 23 22 20 43 43 H 1.09003 * 117.49927 * 145.01923 * 23 22 20 44 44 H 1.09008 * 117.49937 * 214.98173 * 24 22 20 45 45 H 1.08995 * 117.50216 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1868 -0.1187 5 7 3.8812 0.7041 -1.4613 6 6 3.5715 -0.7247 -1.6045 7 6 4.3060 -1.5064 -0.5460 8 1 4.8821 -0.9878 0.2062 9 6 4.2427 -2.8837 -0.5377 10 7 3.4615 -3.5112 -1.3895 11 14 5.2663 -3.8584 0.6835 12 1 5.9613 -2.9234 1.6044 13 1 4.3802 -4.7570 1.4663 14 1 6.2713 -4.6698 -0.0494 15 6 5.2939 0.9696 -1.7642 16 6 5.5602 0.6859 -3.2439 17 6 7.0314 0.9630 -3.5596 18 1 7.7259 0.8133 -2.7328 19 6 7.3421 2.0886 -4.5481 20 6 7.5269 0.6282 -4.9678 21 1 8.5475 0.2587 -5.0676 22 6 6.5132 0.0425 -5.9528 23 6 6.6960 -1.4181 -6.3698 24 6 7.0093 -0.2941 -7.3605 25 1 -0.3633 0.5886 0.8424 26 1 -0.3633 0.4353 -0.9310 27 1 -0.3632 -1.0239 0.0885 28 1 1.7570 1.8160 0.9292 29 1 1.6233 1.8755 -0.8447 30 1 3.8999 0.4835 0.6279 31 1 3.9857 2.1635 0.0464 32 1 2.4983 -0.8771 -1.4896 33 1 3.8836 -1.0670 -2.5911 34 1 3.4172 -4.4801 -1.3840 35 1 5.9242 0.3250 -1.1515 36 1 5.5222 2.0132 -1.5474 37 1 4.9299 1.3305 -3.8566 38 1 5.3320 -0.3576 -3.4606 39 1 6.4983 2.6321 -4.9733 40 1 8.2408 2.6795 -4.3718 41 1 5.4932 0.4139 -5.8540 42 1 7.5387 -1.9618 -5.9426 43 1 5.7962 -2.0077 -6.5457 44 1 6.3155 -0.1446 -8.1878 45 1 8.0577 -0.0980 -7.5850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714818578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:12 Heat of formation + Delta-G solvation = 2.089521 kcal Electronic energy + Delta-G solvation = -21174.036039 eV Core-core repulsion = 18193.256062 eV Total energy + Delta-G solvation = -2980.779977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.67711 -37.65905 -36.14946 -35.08843 -32.29630 -30.53473 -28.25613 -26.37423 -25.25248 -23.59341 -23.19230 -22.25012 -21.86971 -20.80270 -19.46831 -18.73056 -16.37358 -15.91583 -15.56152 -15.54732 -15.05230 -14.64425 -14.16951 -14.01275 -13.83710 -13.45141 -12.98370 -12.61438 -12.44829 -11.89954 -11.54970 -11.43533 -11.23368 -11.15908 -11.08132 -11.03308 -10.73954 -10.62195 -10.56495 -10.46506 -10.37039 -10.16612 -9.86897 -9.71813 -9.48399 -9.21577 -9.03027 -8.83493 -8.15757 -7.01089 -5.84000 -3.87309 3.35470 3.43295 3.46083 3.72039 4.38948 4.54629 4.56457 4.68185 4.87705 5.08697 5.13884 5.37364 5.45065 5.47510 5.51419 5.55310 5.68283 5.76259 5.78033 5.84372 5.93908 5.95688 6.00144 6.04696 6.08738 6.12340 6.18389 6.25961 6.28209 6.33469 6.43398 6.47874 6.51832 6.59581 6.83927 6.98932 7.02854 7.48465 7.82552 7.95734 8.17481 8.25405 8.49057 8.54860 9.20507 9.74939 11.22032 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.005909 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.413233 B = 4737.744512 C = 5745.372348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.072 3.928 4 C 0.055 3.945 5 N -0.542 5.542 6 C 0.180 3.820 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.065 3.935 16 C -0.078 4.078 17 C -0.132 4.132 18 H 0.100 0.900 19 C -0.178 4.178 20 C -0.123 4.123 21 H 0.097 0.903 22 C -0.115 4.115 23 C -0.174 4.174 24 C -0.185 4.185 25 H 0.027 0.973 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.257 0.743 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 9.839 -5.270 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C -0.005 4.005 4 C -0.073 4.073 5 N -0.266 5.266 6 C 0.054 3.946 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.136 4.136 10 N -0.530 5.530 11 Si 0.708 3.292 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.063 4.063 16 C -0.115 4.115 17 C -0.150 4.150 18 H 0.118 0.882 19 C -0.215 4.215 20 C -0.142 4.142 21 H 0.115 0.885 22 C -0.133 4.133 23 C -0.211 4.211 24 C -0.222 4.222 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.632 9.756 -5.664 11.584 hybrid contribution 0.910 -0.945 1.335 1.872 sum 3.542 8.811 -4.329 10.436 Atomic orbital electron populations 1.22630 0.83400 1.01959 0.98536 1.88331 1.17459 1.26592 1.94739 1.22472 0.94753 0.85216 0.98047 1.21992 0.93147 0.98897 0.93310 1.62605 1.17622 1.21944 1.24446 1.19998 0.98519 0.80132 0.95911 1.21647 1.29970 0.91685 1.13362 0.93056 1.24848 0.95330 0.97801 0.95600 1.69965 1.37814 1.08105 1.37127 0.86747 0.80447 0.80350 0.81633 1.20141 1.21282 1.21203 1.21858 0.90776 0.98258 0.95454 1.21093 0.91273 1.02644 0.96538 1.22425 0.98796 1.01690 0.92123 0.88159 1.23086 1.02838 0.90963 1.04569 1.21767 0.98253 0.97758 0.96391 0.88509 1.21671 0.99160 0.98002 0.94461 1.22916 1.03501 0.91469 1.03195 1.22931 1.01616 1.04593 0.93037 0.95460 0.94936 0.90254 0.94765 0.93733 0.92263 0.92183 0.92539 0.95527 0.93345 0.94216 0.93565 0.92352 0.90334 0.88944 0.89482 0.87535 0.88934 0.88661 0.89175 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.52 7.95 -35.23 -0.28 -7.80 16 3 C 0.07 1.32 6.21 37.16 0.23 1.55 16 4 C 0.06 1.09 5.32 -3.82 -0.02 1.07 16 5 N -0.54 -11.66 4.65 -236.07 -1.10 -12.76 16 6 C 0.18 4.65 4.57 -4.98 -0.02 4.63 16 7 C -0.53 -14.67 7.35 -34.44 -0.25 -14.92 16 8 H 0.05 1.43 5.96 -52.48 -0.31 1.12 16 9 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 10 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 11 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 C 0.06 1.26 4.76 -3.82 -0.02 1.24 16 16 C -0.08 -1.39 4.23 -26.73 -0.11 -1.50 16 17 C -0.13 -1.98 5.73 -90.62 -0.52 -2.50 16 18 H 0.10 1.51 8.08 -51.93 -0.42 1.09 16 19 C -0.18 -2.25 9.90 -26.69 -0.26 -2.52 16 20 C -0.12 -1.68 5.85 -90.58 -0.53 -2.21 16 21 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 22 C -0.11 -1.58 5.10 -90.63 -0.46 -2.04 16 23 C -0.17 -2.36 10.25 -26.70 -0.27 -2.63 16 24 C -0.18 -2.18 10.25 -26.70 -0.27 -2.45 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.33 5.87 -51.93 -0.30 1.03 16 31 H 0.06 1.01 7.77 -51.93 -0.40 0.61 16 32 H 0.06 1.60 5.70 -51.93 -0.30 1.31 16 33 H 0.03 0.74 6.20 -51.93 -0.32 0.42 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.04 0.86 6.85 -51.93 -0.36 0.50 16 36 H 0.05 0.80 7.84 -51.93 -0.41 0.39 16 37 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16 38 H 0.08 1.65 6.31 -51.93 -0.33 1.32 16 39 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.11 1.56 7.35 -51.93 -0.38 1.17 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -30.14 354.17 -9.96 -40.10 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.13 Total: 2.88 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -1.50 Total: -18.87 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.36 Total: -38.69 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.28 Total: -7.80 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.14 -9.96 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714818578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.189 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds