Wall clock time and date at job start Mon Mar 30 2020 08:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99393 * 2 1 4 4 C 1.53003 * 109.46753 * 184.72021 * 3 2 1 5 5 N 1.46905 * 109.47389 * 69.29284 * 4 3 2 6 6 C 1.46903 * 110.99958 * 286.22724 * 5 4 3 7 7 C 1.50696 * 109.47200 * 302.64136 * 6 5 4 8 8 H 1.08012 * 120.00045 * 4.44296 * 7 6 5 9 9 C 1.37874 * 120.00252 * 184.44441 * 7 6 5 10 10 N 1.31515 * 119.99835 * 354.84842 * 9 7 6 11 11 Si 1.86792 * 120.00318 * 174.85210 * 9 7 6 12 12 H 1.48504 * 109.47128 * 5.00195 * 11 9 7 13 13 H 1.48504 * 109.47321 * 124.99912 * 11 9 7 14 14 H 1.48505 * 109.47205 * 245.00378 * 11 9 7 15 15 C 1.46901 * 110.99851 * 162.27194 * 5 4 3 16 16 C 1.53001 * 109.46523 * 190.00095 * 15 5 4 17 17 C 1.53000 * 109.46763 * 179.97438 * 16 15 5 18 18 H 1.09006 * 115.54895 * 29.41667 * 17 16 15 19 19 C 1.52998 * 117.50351 * 243.74821 * 17 16 15 20 20 C 1.53001 * 117.49827 * 175.08592 * 17 16 15 21 21 H 1.09000 * 117.49720 * 214.97998 * 20 17 16 22 22 C 1.52993 * 117.50023 * 0.02562 * 20 17 16 23 23 C 1.52997 * 117.49909 * 248.74574 * 22 20 17 24 24 C 1.53000 * 117.49911 * 180.08713 * 22 20 17 25 25 H 1.08999 * 109.46981 * 304.94079 * 1 2 3 26 26 H 1.09002 * 109.47088 * 64.94130 * 1 2 3 27 27 H 1.08999 * 109.46556 * 184.93968 * 1 2 3 28 28 H 1.08999 * 109.47556 * 64.71838 * 3 2 1 29 29 H 1.08997 * 109.47310 * 304.71434 * 3 2 1 30 30 H 1.09004 * 109.47266 * 309.29301 * 4 3 2 31 31 H 1.08994 * 109.47426 * 189.29804 * 4 3 2 32 32 H 1.09002 * 109.46794 * 62.64015 * 6 5 4 33 33 H 1.08995 * 109.46927 * 182.63908 * 6 5 4 34 34 H 0.96997 * 120.00117 * 179.97438 * 10 9 7 35 35 H 1.08998 * 109.47062 * 70.00288 * 15 5 4 36 36 H 1.09002 * 109.47154 * 310.00287 * 15 5 4 37 37 H 1.08998 * 109.47293 * 60.00335 * 16 15 5 38 38 H 1.08992 * 109.47530 * 299.99980 * 16 15 5 39 39 H 1.09003 * 117.49322 * 0.02562 * 19 17 16 40 40 H 1.08996 * 117.50257 * 144.99531 * 19 17 16 41 41 H 1.09003 * 115.54741 * 34.41656 * 22 20 17 42 42 H 1.09002 * 117.50053 * 359.97438 * 23 22 20 43 43 H 1.09003 * 117.49927 * 145.01923 * 23 22 20 44 44 H 1.09008 * 117.49937 * 214.98173 * 24 22 20 45 45 H 1.08995 * 117.50216 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1868 -0.1187 5 7 3.8812 0.7041 -1.4613 6 6 3.5715 -0.7247 -1.6045 7 6 4.3060 -1.5064 -0.5460 8 1 4.8821 -0.9878 0.2062 9 6 4.2427 -2.8837 -0.5377 10 7 3.4615 -3.5112 -1.3895 11 14 5.2663 -3.8584 0.6835 12 1 5.9613 -2.9234 1.6044 13 1 4.3802 -4.7570 1.4663 14 1 6.2713 -4.6698 -0.0494 15 6 5.2939 0.9696 -1.7642 16 6 5.5602 0.6859 -3.2439 17 6 7.0314 0.9630 -3.5596 18 1 7.7259 0.8133 -2.7328 19 6 7.3421 2.0886 -4.5481 20 6 7.5269 0.6282 -4.9678 21 1 8.5475 0.2587 -5.0676 22 6 6.5132 0.0425 -5.9528 23 6 6.6960 -1.4181 -6.3698 24 6 7.0093 -0.2941 -7.3605 25 1 -0.3633 0.5886 0.8424 26 1 -0.3633 0.4353 -0.9310 27 1 -0.3632 -1.0239 0.0885 28 1 1.7570 1.8160 0.9292 29 1 1.6233 1.8755 -0.8447 30 1 3.8999 0.4835 0.6279 31 1 3.9857 2.1635 0.0464 32 1 2.4983 -0.8771 -1.4896 33 1 3.8836 -1.0670 -2.5911 34 1 3.4172 -4.4801 -1.3840 35 1 5.9242 0.3250 -1.1515 36 1 5.5222 2.0132 -1.5474 37 1 4.9299 1.3305 -3.8566 38 1 5.3320 -0.3576 -3.4606 39 1 6.4983 2.6321 -4.9733 40 1 8.2408 2.6795 -4.3718 41 1 5.4932 0.4139 -5.8540 42 1 7.5387 -1.9618 -5.9426 43 1 5.7962 -2.0077 -6.5457 44 1 6.3155 -0.1446 -8.1878 45 1 8.0577 -0.0980 -7.5850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714818578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:11 Heat of formation + Delta-G solvation = -15.213770 kcal Electronic energy + Delta-G solvation = -21174.786366 eV Core-core repulsion = 18193.256062 eV Total energy + Delta-G solvation = -2981.530304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.90387 -39.16094 -37.68392 -36.28956 -34.45267 -31.99159 -30.02604 -28.10232 -26.78736 -25.12658 -24.63879 -23.50011 -23.08930 -21.95465 -21.26079 -19.95901 -18.43380 -17.38627 -17.12709 -16.81519 -16.49720 -16.21103 -15.73908 -15.60077 -15.29385 -14.81636 -14.55710 -14.28008 -13.74509 -13.50885 -13.13142 -12.95579 -12.65895 -12.57508 -12.48254 -12.40672 -12.34626 -12.26660 -12.11789 -11.94003 -11.77500 -11.67722 -11.51291 -11.42493 -11.24106 -10.58564 -10.49417 -10.23154 -10.07877 -8.88303 -8.02066 -6.14620 1.34876 1.36010 1.46335 2.43186 2.65081 3.16511 3.23689 3.30379 3.41067 3.64016 3.95945 4.02120 4.17574 4.31334 4.34809 4.38785 4.43765 4.47277 4.52642 4.55447 4.59595 4.62013 4.72798 4.79207 4.80111 4.90569 4.94107 4.96207 5.02830 5.05801 5.18907 5.24187 5.26743 5.30179 5.41026 5.44568 5.45730 5.54805 5.65093 6.01826 6.24042 6.40266 6.55838 6.74029 7.04907 7.51312 9.00963 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.005909 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.413233 B = 4737.744512 C = 5745.372348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.401 6.401 3 C 0.072 3.928 4 C 0.052 3.948 5 N -0.541 5.541 6 C 0.200 3.800 7 C -0.527 4.527 8 H 0.047 0.953 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.943 3.057 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.067 3.933 16 C -0.063 4.063 17 C -0.155 4.155 18 H 0.099 0.901 19 C -0.150 4.150 20 C -0.123 4.123 21 H 0.108 0.892 22 C -0.132 4.132 23 C -0.194 4.194 24 C -0.156 4.156 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.096 0.904 32 H 0.032 0.968 33 H -0.003 1.003 34 H 0.258 0.742 35 H 0.014 0.986 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 11.800 -5.182 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.320 6.320 3 C -0.004 4.004 4 C -0.076 4.076 5 N -0.264 5.264 6 C 0.073 3.927 7 C -0.566 4.566 8 H 0.065 0.935 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.770 3.230 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.207 1.207 15 C -0.061 4.061 16 C -0.101 4.101 17 C -0.173 4.173 18 H 0.117 0.883 19 C -0.187 4.187 20 C -0.141 4.141 21 H 0.126 0.874 22 C -0.150 4.150 23 C -0.231 4.231 24 C -0.193 4.193 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.114 0.886 32 H 0.050 0.950 33 H 0.015 0.985 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.792 11.739 -5.570 13.535 hybrid contribution 0.501 -1.502 1.302 2.051 sum 4.293 10.236 -4.267 11.892 Atomic orbital electron populations 1.22755 0.81320 1.02325 1.00303 1.88251 1.20008 1.28622 1.95115 1.22572 0.93408 0.84468 0.99994 1.22144 0.94801 0.99640 0.91017 1.62557 1.19058 1.18888 1.25917 1.19548 0.96605 0.82703 0.93798 1.21864 1.29429 0.92053 1.13300 0.93459 1.25631 0.96522 0.99010 0.97518 1.70089 1.39346 1.08337 1.38873 0.85741 0.78932 0.78890 0.79481 1.19435 1.20885 1.20659 1.21933 0.88920 0.99341 0.95899 1.20866 0.93652 0.99954 0.95614 1.22292 0.96694 1.05079 0.93260 0.88266 1.23144 1.03718 0.90288 1.01570 1.21836 0.98482 0.98894 0.94849 0.87364 1.21683 0.98824 0.98005 0.96460 1.22939 1.03217 0.91763 1.05147 1.23008 1.02812 1.01461 0.92028 0.92515 0.93965 0.90936 0.91618 0.92833 0.95367 0.88588 0.95010 0.98495 0.93310 0.96804 0.90457 0.92029 0.94616 0.88563 0.87063 0.89031 0.89119 0.89745 0.87891 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.01 113.37 1.25 2.20 16 2 O -0.40 -17.15 7.95 -148.98 -1.18 -18.33 16 3 C 0.07 2.53 6.21 71.98 0.45 2.98 16 4 C 0.05 2.02 5.32 86.30 0.46 2.48 16 5 N -0.54 -23.50 4.65 -900.77 -4.19 -27.70 16 6 C 0.20 10.80 4.57 85.56 0.39 11.19 16 7 C -0.53 -30.24 7.35 25.60 0.19 -30.05 16 8 H 0.05 2.71 5.96 -2.90 -0.02 2.69 16 9 C 0.01 0.66 5.45 84.65 0.46 1.12 16 10 N -0.93 -57.29 13.29 21.45 0.29 -57.00 16 11 Si 0.94 46.15 29.54 68.60 2.03 48.18 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 14 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 15 C 0.07 2.60 4.76 86.30 0.41 3.01 16 16 C -0.06 -2.30 4.23 30.59 0.13 -2.17 16 17 C -0.15 -4.54 5.73 -10.79 -0.06 -4.61 16 18 H 0.10 2.92 8.08 -2.38 -0.02 2.90 16 19 C -0.15 -3.42 9.90 30.62 0.30 -3.11 16 20 C -0.12 -3.17 5.85 -10.77 -0.06 -3.24 16 21 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 22 C -0.13 -3.58 5.10 -10.80 -0.06 -3.64 16 23 C -0.19 -5.32 10.25 30.62 0.31 -5.01 16 24 C -0.16 -3.41 10.25 30.62 0.31 -3.10 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.03 1.27 5.87 -2.38 -0.01 1.26 16 31 H 0.10 2.98 7.77 -2.39 -0.02 2.96 16 32 H 0.03 1.89 5.70 -2.39 -0.01 1.88 16 33 H 0.00 -0.18 6.20 -2.39 -0.01 -0.19 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.01 0.60 6.85 -2.39 -0.02 0.59 16 36 H 0.08 2.52 7.84 -2.39 -0.02 2.50 16 37 H 0.06 2.15 7.62 -2.39 -0.02 2.13 16 38 H 0.04 1.59 6.31 -2.39 -0.02 1.57 16 39 H 0.10 2.14 8.03 -2.39 -0.02 2.12 16 40 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.09 2.74 7.35 -2.39 -0.02 2.72 16 42 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.11 1.98 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -67.30 354.17 2.36 -64.94 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.93 Total: 21.85 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 4.49 Total: -31.93 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -3.91 Total: -84.70 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -1.18 Total: -18.33 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -67.30 2.36 -64.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714818578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.727 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds