Wall clock time and date at job start Mon Mar 30 2020 07:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99884 * 2 1 4 4 C 1.46900 * 110.99980 * 123.95311 * 2 1 3 5 5 H 1.08997 * 109.47088 * 54.99652 * 4 2 1 6 6 C 1.52997 * 109.47210 * 294.99319 * 4 2 1 7 7 C 1.53001 * 109.49371 * 180.02562 * 6 4 2 8 8 C 1.53010 * 109.47138 * 59.97065 * 7 6 4 9 9 C 1.52982 * 109.45026 * 300.01465 * 8 7 6 10 10 C 1.53082 * 109.44094 * 300.12738 * 9 8 7 11 11 C 1.53182 * 109.21944 * 297.50832 * 10 9 8 12 12 C 1.53191 * 109.02068 * 303.11592 * 11 10 9 13 13 C 1.53091 * 109.21072 * 56.91032 * 12 11 10 14 14 H 1.08991 * 109.48099 * 62.40261 * 13 12 11 15 15 C 1.50704 * 109.48646 * 182.43229 * 13 12 11 16 16 H 1.07997 * 120.00038 * 359.94974 * 15 13 12 17 17 C 1.37878 * 119.99856 * 179.97438 * 15 13 12 18 18 N 1.31514 * 119.99611 * 179.97438 * 17 15 13 19 19 Si 1.86794 * 120.00124 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47228 * 89.99924 * 19 17 15 21 21 H 1.48502 * 109.47316 * 210.00499 * 19 17 15 22 22 H 1.48504 * 109.47107 * 330.00161 * 19 17 15 23 23 O 1.42884 * 109.52407 * 180.13791 * 9 8 7 24 24 C 1.53002 * 109.47955 * 60.04727 * 9 8 7 25 25 H 1.08999 * 109.47411 * 296.04481 * 1 2 3 26 26 H 1.09002 * 109.47042 * 56.04565 * 1 2 3 27 27 H 1.08995 * 109.47211 * 176.04330 * 1 2 3 28 28 H 1.09002 * 109.47390 * 183.95012 * 3 2 1 29 29 H 1.09003 * 109.47693 * 303.95980 * 3 2 1 30 30 H 1.09009 * 109.47180 * 63.95475 * 3 2 1 31 31 H 1.09001 * 109.46905 * 300.02717 * 6 4 2 32 32 H 1.09001 * 109.47160 * 60.02100 * 6 4 2 33 33 H 1.09001 * 109.47008 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47118 * 299.97351 * 7 6 4 35 35 H 1.09000 * 109.46900 * 180.02562 * 8 7 6 36 36 H 1.08995 * 109.47582 * 60.01631 * 8 7 6 37 37 H 1.09002 * 109.52059 * 57.44455 * 10 9 8 38 38 H 1.09004 * 109.52492 * 177.56860 * 10 9 8 39 39 H 1.08992 * 109.54591 * 62.91554 * 11 10 9 40 40 H 1.08996 * 109.54733 * 183.19552 * 11 10 9 41 41 H 1.09001 * 109.47078 * 297.00348 * 12 11 10 42 42 H 1.08999 * 109.57659 * 176.88176 * 12 11 10 43 43 H 0.97003 * 119.99775 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.47396 * 59.92972 * 24 9 8 45 45 H 1.09001 * 109.47474 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5753 -1.7716 1.1240 6 6 1.6092 -0.0694 2.4439 7 6 2.1578 -0.8665 3.6291 8 6 3.6822 -0.9493 3.5262 9 6 4.0675 -1.6463 2.2201 10 6 3.4741 -3.0573 2.2013 11 6 4.0719 -3.8711 3.3532 12 6 5.5980 -3.8788 3.2197 13 6 6.1092 -2.4359 3.1999 14 1 5.8630 -1.9501 4.1439 15 6 7.6041 -2.4348 3.0088 16 1 8.1368 -3.3693 2.9120 17 6 8.2916 -1.2408 2.9580 18 7 9.5962 -1.2399 2.7917 19 14 7.3702 0.3755 3.1253 20 1 7.3030 0.7609 4.5578 21 1 8.0810 1.4319 2.3611 22 1 5.9940 0.2184 2.5898 23 8 5.4908 -1.7274 2.1239 24 6 3.5198 -0.8484 1.0351 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5897 1.9165 -0.8524 30 1 1.7043 1.8724 0.9234 31 1 2.0290 0.9364 2.4572 32 1 0.5232 -0.0108 2.5172 33 1 1.8829 -0.3696 4.5595 34 1 1.7377 -1.8721 3.6163 35 1 4.0730 -1.5175 4.3703 36 1 4.1025 0.0563 3.5393 37 1 2.3921 -2.9990 2.3196 38 1 3.7114 -3.5397 1.2530 39 1 3.7922 -3.4173 4.3038 40 1 3.6961 -4.8934 3.3109 41 1 5.8791 -4.3777 2.2923 42 1 6.0359 -4.4089 4.0655 43 1 10.0799 -0.3998 2.7556 44 1 3.9399 0.1573 1.0489 45 1 3.7947 -1.3448 0.1044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715291850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:10 Heat of formation + Delta-G solvation = -48.411199 kcal Electronic energy + Delta-G solvation = -22816.193660 eV Core-core repulsion = 19833.223808 eV Total energy + Delta-G solvation = -2982.969852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35057 -37.96545 -34.84456 -32.75481 -32.52453 -30.83987 -29.45989 -27.87850 -27.24622 -25.23180 -24.28941 -22.22361 -21.97639 -21.03193 -19.31110 -17.82589 -16.76196 -16.43252 -15.56771 -14.98737 -14.73025 -14.64067 -14.38310 -14.04386 -13.98011 -13.63135 -13.05831 -12.88873 -12.48031 -12.26574 -12.22228 -12.05302 -11.82850 -11.74529 -11.47299 -11.21153 -11.12889 -10.93053 -10.88134 -10.52244 -10.34738 -10.21348 -10.13558 -9.79265 -9.75304 -9.44537 -8.91969 -8.48920 -8.25944 -7.93849 -6.07334 -4.14641 3.39890 3.47198 3.68762 3.89497 4.54653 4.58569 4.82128 5.00831 5.07091 5.17442 5.19699 5.30417 5.37654 5.40061 5.41480 5.49304 5.52952 5.59454 5.62342 5.67253 5.75569 5.78247 5.87168 5.92983 5.97473 6.05416 6.13071 6.16325 6.20327 6.35079 6.37454 6.44293 6.51782 6.54682 6.69631 6.79587 6.81076 6.85305 7.04476 7.06258 7.27784 7.69843 8.47857 8.63990 8.96637 9.57308 11.03065 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.007310 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.622398 B = 3829.384725 C = 4459.293921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.015 3.985 4 C 0.087 3.913 5 H 0.085 0.915 6 C -0.152 4.152 7 C -0.112 4.112 8 C -0.148 4.148 9 C 0.118 3.882 10 C -0.139 4.139 11 C -0.123 4.123 12 C -0.134 4.134 13 C 0.185 3.815 14 H 0.014 0.986 15 C -0.515 4.515 16 H 0.078 0.922 17 C 0.083 3.917 18 N -0.893 5.893 19 Si 0.867 3.133 20 H -0.289 1.289 21 H -0.295 1.295 22 H -0.215 1.215 23 O -0.365 6.365 24 C -0.095 4.095 25 H 0.027 0.973 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.264 0.736 44 H 0.066 0.934 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.048 2.252 -1.421 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.133 4.133 4 C -0.021 4.021 5 H 0.103 0.897 6 C -0.191 4.191 7 C -0.150 4.150 8 C -0.186 4.186 9 C 0.077 3.923 10 C -0.176 4.176 11 C -0.161 4.161 12 C -0.172 4.172 13 C 0.129 3.871 14 H 0.032 0.968 15 C -0.551 4.551 16 H 0.096 0.904 17 C -0.121 4.121 18 N -0.531 5.531 19 Si 0.693 3.307 20 H -0.216 1.216 21 H -0.222 1.222 22 H -0.138 1.138 23 O -0.285 6.285 24 C -0.133 4.133 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.641 2.199 -2.054 18.882 hybrid contribution -0.629 1.180 1.079 1.719 sum -19.270 3.380 -0.975 19.588 Atomic orbital electron populations 1.22388 0.87937 1.02028 1.00251 1.62231 1.07369 1.13998 1.42614 1.22494 1.01655 0.88995 1.00128 1.21772 0.95764 0.97349 0.87227 0.89693 1.22230 1.00094 1.00421 0.96394 1.21471 0.96155 1.00137 0.97216 1.22233 0.95008 1.01717 0.99612 1.21066 0.85437 0.92719 0.93091 1.22207 0.99223 0.96786 0.99411 1.21678 0.97428 0.98859 0.98087 1.22056 0.93139 1.00282 1.01687 1.20128 0.93061 0.87269 0.86605 0.96820 1.20950 0.87801 0.94806 1.51578 0.90420 1.25043 0.94537 0.99843 0.92652 1.69936 1.07338 1.27356 1.48440 0.87143 0.83810 0.82152 0.77547 1.21599 1.22213 1.13784 1.88436 1.14402 1.75715 1.49925 1.21489 0.92409 1.00915 0.98504 0.95495 0.91699 0.91558 0.90670 0.91828 0.95305 0.91714 0.92310 0.92418 0.91673 0.91023 0.91676 0.92095 0.91636 0.92516 0.92993 0.92040 0.92198 0.92618 0.91498 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.31 60.06 0.56 0.78 16 2 N -0.54 -6.63 5.01 -243.18 -1.22 -7.84 16 3 C 0.02 0.18 8.82 60.06 0.53 0.71 16 4 C 0.09 1.14 1.96 -67.71 -0.13 1.01 16 5 H 0.09 1.09 6.46 -51.93 -0.34 0.76 16 6 C -0.15 -1.86 4.51 -26.73 -0.12 -1.98 16 7 C -0.11 -1.45 5.65 -26.72 -0.15 -1.60 16 8 C -0.15 -2.46 3.99 -26.73 -0.11 -2.57 16 9 C 0.12 2.11 0.73 -90.59 -0.07 2.04 16 10 C -0.14 -2.20 4.20 -26.59 -0.11 -2.32 16 11 C -0.12 -2.01 5.72 -26.54 -0.15 -2.16 16 12 C -0.13 -2.71 5.36 -26.59 -0.14 -2.85 16 13 C 0.18 4.39 1.66 -27.83 -0.05 4.34 16 14 H 0.01 0.34 5.78 -51.93 -0.30 0.04 16 15 C -0.51 -14.76 9.38 -34.44 -0.32 -15.09 16 16 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 17 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 18 N -0.89 -27.77 13.96 55.43 0.77 -27.00 16 19 Si 0.87 21.91 26.99 -169.99 -4.59 17.32 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 22 H -0.22 -5.10 4.03 56.52 0.23 -4.87 16 23 O -0.36 -8.38 6.80 -35.23 -0.24 -8.62 16 24 C -0.10 -1.55 4.18 -26.73 -0.11 -1.66 16 25 H 0.03 0.25 6.44 -51.93 -0.33 -0.08 16 26 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.96 6.33 -51.93 -0.33 0.63 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.03 0.32 6.28 -51.92 -0.33 -0.01 16 31 H 0.06 0.83 6.38 -51.93 -0.33 0.50 16 32 H 0.06 0.64 6.52 -51.93 -0.34 0.30 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.79 6.37 -51.93 -0.33 0.46 16 35 H 0.07 1.25 4.99 -51.93 -0.26 0.99 16 36 H 0.06 1.17 7.22 -51.93 -0.37 0.80 16 37 H 0.06 0.83 4.80 -51.93 -0.25 0.58 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.89 6.63 -51.93 -0.34 0.54 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.07 1.15 6.42 -51.93 -0.33 0.82 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 312.08 15.07 4.70 4.70 Total: -1.00 -30.59 312.08 -8.76 -39.34 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.72 Total: 1.08 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -0.47 Total: -18.99 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.44 Total: -34.84 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.24 Total: -8.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.59 -8.76 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715291850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.067 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds