Wall clock time and date at job start Mon Mar 30 2020 07:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99884 * 2 1 4 4 C 1.46900 * 110.99980 * 123.95311 * 2 1 3 5 5 H 1.08997 * 109.47088 * 54.99652 * 4 2 1 6 6 C 1.52997 * 109.47210 * 294.99319 * 4 2 1 7 7 C 1.53001 * 109.49371 * 180.02562 * 6 4 2 8 8 C 1.53010 * 109.47138 * 59.97065 * 7 6 4 9 9 C 1.52982 * 109.45026 * 300.01465 * 8 7 6 10 10 C 1.53082 * 109.44094 * 300.12738 * 9 8 7 11 11 C 1.53182 * 109.21944 * 297.50832 * 10 9 8 12 12 C 1.53191 * 109.02068 * 303.11592 * 11 10 9 13 13 C 1.53091 * 109.21072 * 56.91032 * 12 11 10 14 14 H 1.08991 * 109.48099 * 62.40261 * 13 12 11 15 15 C 1.50704 * 109.48646 * 182.43229 * 13 12 11 16 16 H 1.07997 * 120.00038 * 359.94974 * 15 13 12 17 17 C 1.37878 * 119.99856 * 179.97438 * 15 13 12 18 18 N 1.31514 * 119.99611 * 179.97438 * 17 15 13 19 19 Si 1.86794 * 120.00124 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47228 * 89.99924 * 19 17 15 21 21 H 1.48502 * 109.47316 * 210.00499 * 19 17 15 22 22 H 1.48504 * 109.47107 * 330.00161 * 19 17 15 23 23 O 1.42884 * 109.52407 * 180.13791 * 9 8 7 24 24 C 1.53002 * 109.47955 * 60.04727 * 9 8 7 25 25 H 1.08999 * 109.47411 * 296.04481 * 1 2 3 26 26 H 1.09002 * 109.47042 * 56.04565 * 1 2 3 27 27 H 1.08995 * 109.47211 * 176.04330 * 1 2 3 28 28 H 1.09002 * 109.47390 * 183.95012 * 3 2 1 29 29 H 1.09003 * 109.47693 * 303.95980 * 3 2 1 30 30 H 1.09009 * 109.47180 * 63.95475 * 3 2 1 31 31 H 1.09001 * 109.46905 * 300.02717 * 6 4 2 32 32 H 1.09001 * 109.47160 * 60.02100 * 6 4 2 33 33 H 1.09001 * 109.47008 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47118 * 299.97351 * 7 6 4 35 35 H 1.09000 * 109.46900 * 180.02562 * 8 7 6 36 36 H 1.08995 * 109.47582 * 60.01631 * 8 7 6 37 37 H 1.09002 * 109.52059 * 57.44455 * 10 9 8 38 38 H 1.09004 * 109.52492 * 177.56860 * 10 9 8 39 39 H 1.08992 * 109.54591 * 62.91554 * 11 10 9 40 40 H 1.08996 * 109.54733 * 183.19552 * 11 10 9 41 41 H 1.09001 * 109.47078 * 297.00348 * 12 11 10 42 42 H 1.08999 * 109.57659 * 176.88176 * 12 11 10 43 43 H 0.97003 * 119.99775 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.47396 * 59.92972 * 24 9 8 45 45 H 1.09001 * 109.47474 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5753 -1.7716 1.1240 6 6 1.6092 -0.0694 2.4439 7 6 2.1578 -0.8665 3.6291 8 6 3.6822 -0.9493 3.5262 9 6 4.0675 -1.6463 2.2201 10 6 3.4741 -3.0573 2.2013 11 6 4.0719 -3.8711 3.3532 12 6 5.5980 -3.8788 3.2197 13 6 6.1092 -2.4359 3.1999 14 1 5.8630 -1.9501 4.1439 15 6 7.6041 -2.4348 3.0088 16 1 8.1368 -3.3693 2.9120 17 6 8.2916 -1.2408 2.9580 18 7 9.5962 -1.2399 2.7917 19 14 7.3702 0.3755 3.1253 20 1 7.3030 0.7609 4.5578 21 1 8.0810 1.4319 2.3611 22 1 5.9940 0.2184 2.5898 23 8 5.4908 -1.7274 2.1239 24 6 3.5198 -0.8484 1.0351 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5897 1.9165 -0.8524 30 1 1.7043 1.8724 0.9234 31 1 2.0290 0.9364 2.4572 32 1 0.5232 -0.0108 2.5172 33 1 1.8829 -0.3696 4.5595 34 1 1.7377 -1.8721 3.6163 35 1 4.0730 -1.5175 4.3703 36 1 4.1025 0.0563 3.5393 37 1 2.3921 -2.9990 2.3196 38 1 3.7114 -3.5397 1.2530 39 1 3.7922 -3.4173 4.3038 40 1 3.6961 -4.8934 3.3109 41 1 5.8791 -4.3777 2.2923 42 1 6.0359 -4.4089 4.0655 43 1 10.0799 -0.3998 2.7556 44 1 3.9399 0.1573 1.0489 45 1 3.7947 -1.3448 0.1044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715291850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:09 Heat of formation + Delta-G solvation = -68.671189 kcal Electronic energy + Delta-G solvation = -22817.072199 eV Core-core repulsion = 19833.223808 eV Total energy + Delta-G solvation = -2983.848391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64916 -39.21329 -36.14585 -34.59631 -34.27035 -32.26505 -30.71591 -29.08974 -28.41851 -26.93693 -25.27956 -23.77967 -23.18155 -22.44470 -20.58997 -19.17638 -18.92110 -17.66120 -17.13903 -16.28904 -15.96715 -15.82010 -15.62043 -15.41245 -15.21807 -15.10263 -14.57573 -14.41313 -13.89541 -13.75863 -13.37699 -13.25014 -13.02025 -12.92707 -12.61936 -12.59218 -12.52056 -12.45207 -12.14036 -12.01099 -11.77085 -11.69615 -11.52895 -11.40943 -11.26991 -11.03490 -10.87095 -10.45929 -9.61995 -9.14389 -8.35823 -6.47345 1.33783 1.38168 1.65843 2.41918 2.76794 3.06344 3.46364 3.73847 3.89074 3.99712 4.09717 4.14842 4.18754 4.22435 4.29965 4.39852 4.41309 4.49368 4.52931 4.58844 4.60929 4.70523 4.74499 4.81162 4.83592 4.95152 4.96724 5.04561 5.06262 5.11969 5.14784 5.17444 5.19180 5.25350 5.29969 5.30829 5.43589 5.51293 5.64436 5.66611 6.11904 6.19613 6.24811 6.57622 6.99799 7.30180 8.78344 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.007310 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.622398 B = 3829.384725 C = 4459.293921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.555 5.555 3 C 0.016 3.984 4 C 0.096 3.904 5 H 0.095 0.905 6 C -0.147 4.147 7 C -0.104 4.104 8 C -0.148 4.148 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.115 4.115 12 C -0.133 4.133 13 C 0.192 3.808 14 H 0.016 0.984 15 C -0.527 4.527 16 H 0.037 0.963 17 C 0.026 3.974 18 N -0.942 5.942 19 Si 0.929 3.071 20 H -0.281 1.281 21 H -0.300 1.300 22 H -0.195 1.195 23 O -0.394 6.394 24 C -0.091 4.091 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.266 0.734 44 H 0.050 0.950 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.425 2.763 -0.929 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.278 5.278 3 C -0.132 4.132 4 C -0.012 4.012 5 H 0.113 0.887 6 C -0.186 4.186 7 C -0.142 4.142 8 C -0.185 4.185 9 C 0.065 3.935 10 C -0.170 4.170 11 C -0.152 4.152 12 C -0.171 4.171 13 C 0.136 3.864 14 H 0.034 0.966 15 C -0.564 4.564 16 H 0.056 0.944 17 C -0.173 4.173 18 N -0.582 5.582 19 Si 0.753 3.247 20 H -0.207 1.207 21 H -0.228 1.228 22 H -0.116 1.116 23 O -0.315 6.315 24 C -0.129 4.129 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.046 2.696 -1.562 23.256 hybrid contribution 0.761 0.959 0.863 1.498 sum -22.285 3.655 -0.700 22.594 Atomic orbital electron populations 1.22453 0.85984 1.02903 1.01197 1.62193 1.09133 1.14135 1.42314 1.22473 1.00488 0.89119 1.01096 1.21640 0.92998 0.98278 0.88295 0.88747 1.22194 1.01479 0.99664 0.95280 1.21446 0.92922 1.01504 0.98336 1.22203 0.98031 1.00156 0.98149 1.21450 0.82555 0.94745 0.94708 1.22178 1.01099 0.94920 0.98842 1.21642 0.93768 1.00886 0.98907 1.21982 0.96656 0.97650 1.00820 1.19821 0.90247 0.89648 0.86640 0.96603 1.21304 0.91088 0.93231 1.50780 0.94443 1.25933 0.95210 1.03638 0.92498 1.70073 1.09096 1.28271 1.50764 0.86194 0.83350 0.77338 0.77796 1.20718 1.22762 1.11648 1.88284 1.18045 1.75769 1.49370 1.21444 0.95144 0.99364 0.96959 0.94564 0.90717 0.90760 0.92705 0.90414 0.94707 0.92527 0.89846 0.90779 0.90014 0.91865 0.93510 0.88555 0.92528 0.91146 0.90186 0.93751 0.92293 0.92537 0.93115 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.31 127.69 1.19 1.53 16 2 N -0.55 -11.96 5.01 -923.27 -4.62 -16.58 16 3 C 0.02 0.34 8.82 127.69 1.13 1.47 16 4 C 0.10 2.20 1.96 44.92 0.09 2.28 16 5 H 0.09 2.00 6.46 -2.39 -0.02 1.98 16 6 C -0.15 -2.96 4.51 30.59 0.14 -2.82 16 7 C -0.10 -2.22 5.65 30.60 0.17 -2.05 16 8 C -0.15 -4.52 3.99 30.59 0.12 -4.39 16 9 C 0.11 3.58 0.73 -10.77 -0.01 3.57 16 10 C -0.13 -3.82 4.20 30.68 0.13 -3.69 16 11 C -0.11 -3.40 5.72 30.72 0.18 -3.22 16 12 C -0.13 -5.36 5.36 30.69 0.16 -5.19 16 13 C 0.19 9.22 1.66 29.88 0.05 9.27 16 14 H 0.02 0.78 5.78 -2.39 -0.01 0.76 16 15 C -0.53 -31.55 9.38 25.60 0.24 -31.31 16 16 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 17 C 0.03 1.60 5.47 84.65 0.46 2.07 16 18 N -0.94 -61.22 13.96 21.45 0.30 -60.92 16 19 Si 0.93 46.56 26.99 68.60 1.85 48.41 16 20 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 22 H -0.19 -9.04 4.03 99.48 0.40 -8.63 16 23 O -0.39 -18.07 6.80 -148.98 -1.01 -19.09 16 24 C -0.09 -2.83 4.18 30.60 0.13 -2.70 16 25 H 0.04 0.50 6.44 -2.39 -0.02 0.49 16 26 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.36 6.33 -2.39 -0.02 1.34 16 29 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 30 H 0.03 0.68 6.28 -2.38 -0.01 0.67 16 31 H 0.06 1.26 6.38 -2.39 -0.02 1.24 16 32 H 0.08 1.33 6.52 -2.39 -0.02 1.32 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.51 6.37 -2.39 -0.02 1.49 16 35 H 0.06 2.03 4.99 -2.39 -0.01 2.02 16 36 H 0.05 1.59 7.22 -2.39 -0.02 1.57 16 37 H 0.10 2.12 4.80 -2.39 -0.01 2.11 16 38 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.07 1.93 6.63 -2.39 -0.02 1.91 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 44 H 0.05 1.72 6.42 -2.39 -0.02 1.70 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -69.69 312.08 1.35 -68.35 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.65 Total: 15.03 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 4.18 Total: -35.20 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -4.32 Total: -77.50 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -1.01 Total: -19.09 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.85 Total: 48.41 kcal Total: -69.69 1.35 -68.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715291850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.326 kcal (2) G-P(sol) polarization free energy of solvation -69.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds