Wall clock time and date at job start Mon Mar 30 2020 07:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00022 * 2 1 4 4 C 1.46901 * 110.99917 * 123.95037 * 2 1 3 5 5 H 1.08996 * 109.47391 * 55.00422 * 4 2 1 6 6 C 1.53007 * 109.47198 * 294.99916 * 4 2 1 7 7 C 1.53002 * 109.43964 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47943 * 60.04230 * 7 6 4 9 9 C 1.52980 * 109.50552 * 300.03277 * 8 7 6 10 10 C 1.53099 * 109.42969 * 179.79380 * 9 8 7 11 11 C 1.53176 * 109.17335 * 62.46028 * 10 9 8 12 12 C 1.53178 * 109.03649 * 56.98071 * 11 10 9 13 13 C 1.53093 * 109.15234 * 303.00453 * 12 11 10 14 14 H 1.08995 * 109.48187 * 297.60958 * 13 12 11 15 15 C 1.50704 * 109.47466 * 177.58972 * 13 12 11 16 16 H 1.08000 * 119.99822 * 269.15056 * 15 13 12 17 17 C 1.37873 * 120.00122 * 89.15518 * 15 13 12 18 18 N 1.31515 * 120.00042 * 352.68479 * 17 15 13 19 19 Si 1.86797 * 120.00304 * 172.68110 * 17 15 13 20 20 H 1.48504 * 109.47142 * 270.00267 * 19 17 15 21 21 H 1.48497 * 109.47221 * 150.00174 * 19 17 15 22 22 H 1.48499 * 109.46764 * 30.00118 * 19 17 15 23 23 O 1.42878 * 109.53268 * 299.75855 * 9 8 7 24 24 C 1.52985 * 109.50674 * 59.87826 * 9 8 7 25 25 H 1.09006 * 109.47274 * 296.04817 * 1 2 3 26 26 H 1.08993 * 109.46964 * 56.04814 * 1 2 3 27 27 H 1.08998 * 109.47452 * 176.05237 * 1 2 3 28 28 H 1.09003 * 109.47366 * 183.95849 * 3 2 1 29 29 H 1.09003 * 109.46829 * 303.94515 * 3 2 1 30 30 H 1.08994 * 109.47424 * 63.95385 * 3 2 1 31 31 H 1.08997 * 109.47774 * 59.96287 * 6 4 2 32 32 H 1.09003 * 109.48090 * 299.94632 * 6 4 2 33 33 H 1.08997 * 109.46598 * 300.03750 * 7 6 4 34 34 H 1.08997 * 109.46930 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.46252 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.46464 * 60.04417 * 8 7 6 37 37 H 1.09001 * 109.51925 * 182.36791 * 10 9 8 38 38 H 1.08994 * 109.52075 * 302.49156 * 10 9 8 39 39 H 1.09000 * 109.54437 * 176.85399 * 11 10 9 40 40 H 1.09008 * 109.54392 * 297.02737 * 11 10 9 41 41 H 1.09001 * 109.53068 * 183.09907 * 12 11 10 42 42 H 1.08997 * 109.51758 * 62.90509 * 12 11 10 43 43 H 0.97003 * 119.99691 * 354.54754 * 18 17 15 44 44 H 1.09005 * 109.46487 * 60.12385 * 24 9 8 45 45 H 1.09005 * 109.46890 * 180.09882 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.5754 -1.7716 1.1241 6 6 1.6090 -0.0693 2.4440 7 6 2.1571 -0.8680 3.6284 8 6 3.6814 -0.9504 3.5265 9 6 4.0692 -1.6449 2.2198 10 6 5.5948 -1.7218 2.1172 11 6 6.1345 -2.5717 3.2717 12 6 5.4782 -3.9549 3.2230 13 6 3.9572 -3.7916 3.2835 14 1 3.6788 -3.3267 4.2292 15 6 3.3020 -5.1446 3.1765 16 1 3.0271 -5.5364 2.2084 17 6 3.0535 -5.8821 4.3146 18 7 3.5149 -5.4739 5.4765 19 14 2.0612 -7.4610 4.2062 20 1 0.6201 -7.1537 4.3905 21 1 2.5068 -8.3995 5.2673 22 1 2.2680 -8.0851 2.8747 23 8 3.5243 -2.9655 2.2007 24 6 3.5197 -0.8480 1.0351 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3634 -1.0252 -0.0707 28 1 3.0828 1.3433 -0.0709 29 1 1.5898 1.9162 -0.8526 30 1 1.7044 1.8724 0.9232 31 1 0.5231 -0.0098 2.5168 32 1 2.0299 0.9361 2.4581 33 1 1.7371 -1.8737 3.6138 34 1 1.8817 -0.3724 4.5593 35 1 4.0715 -1.5197 4.3701 36 1 4.1013 0.0554 3.5418 37 1 5.8734 -2.1785 1.1675 38 1 6.0149 -0.7177 2.1756 39 1 7.2149 -2.6769 3.1730 40 1 5.9003 -2.0887 4.2205 41 1 5.8150 -4.5481 4.0732 42 1 5.7542 -4.4565 2.2955 43 1 4.0957 -4.6984 5.5224 44 1 3.9394 0.1579 1.0480 45 1 3.7948 -1.3444 0.1044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715291855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:13 Heat of formation + Delta-G solvation = -63.884340 kcal Electronic energy + Delta-G solvation = -22657.404055 eV Core-core repulsion = 19673.763237 eV Total energy + Delta-G solvation = -2983.640818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10207 -37.85262 -34.58446 -32.97507 -32.73181 -30.74737 -29.23126 -27.65766 -26.71920 -24.93168 -24.09788 -22.34467 -21.68001 -21.07439 -19.07704 -18.38933 -17.07746 -15.95755 -15.20442 -15.04275 -14.68804 -14.37556 -14.26841 -13.94167 -13.74607 -13.48401 -12.93023 -12.83024 -12.56727 -12.16502 -12.01597 -11.81469 -11.66737 -11.56446 -11.39857 -11.28381 -10.97637 -10.78819 -10.61750 -10.39062 -10.33871 -10.25806 -10.14114 -10.10249 -9.90148 -9.29605 -8.66561 -8.35066 -8.13451 -8.02257 -6.42967 -4.13235 3.43866 3.46033 3.63157 4.07019 4.45051 4.72780 4.99215 5.05698 5.19530 5.28290 5.32354 5.37368 5.42145 5.48333 5.49436 5.57863 5.60864 5.71536 5.74625 5.80232 5.92395 5.94477 5.95144 5.97427 6.03368 6.19570 6.26012 6.29339 6.29900 6.44564 6.49680 6.57112 6.58243 6.71430 6.81310 6.85178 6.94462 7.01814 7.19859 7.22265 7.47695 8.08181 8.30264 8.70701 8.89169 9.58062 10.94854 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.006576 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.028963 B = 4256.663830 C = 4988.572605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.542 5.542 3 C 0.017 3.983 4 C 0.088 3.912 5 H 0.097 0.903 6 C -0.146 4.146 7 C -0.110 4.110 8 C -0.141 4.141 9 C 0.119 3.881 10 C -0.136 4.136 11 C -0.125 4.125 12 C -0.141 4.141 13 C 0.203 3.797 14 H 0.024 0.976 15 C -0.583 4.583 16 H 0.057 0.943 17 C 0.024 3.976 18 N -0.909 5.909 19 Si 1.072 2.928 20 H -0.286 1.286 21 H -0.285 1.285 22 H -0.287 1.287 23 O -0.366 6.366 24 C -0.089 4.089 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.270 0.730 44 H 0.064 0.936 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 12.571 -6.657 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.131 4.131 4 C -0.020 4.020 5 H 0.115 0.885 6 C -0.185 4.185 7 C -0.148 4.148 8 C -0.179 4.179 9 C 0.078 3.922 10 C -0.174 4.174 11 C -0.163 4.163 12 C -0.179 4.179 13 C 0.147 3.853 14 H 0.041 0.959 15 C -0.621 4.621 16 H 0.075 0.925 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.900 3.100 20 H -0.213 1.213 21 H -0.211 1.211 22 H -0.213 1.213 23 O -0.286 6.286 24 C -0.127 4.127 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.726 11.060 -6.342 12.866 hybrid contribution 0.725 1.815 0.113 1.958 sum -1.001 12.875 -6.230 14.338 Atomic orbital electron populations 1.22377 0.87867 1.02340 0.99995 1.62275 1.07593 1.13368 1.43175 1.22450 1.01029 0.89621 1.00021 1.21710 0.95546 0.98065 0.86632 0.88505 1.22159 1.00225 0.99339 0.96743 1.21347 0.95641 1.01368 0.96484 1.22112 0.96395 0.99948 0.99416 1.21175 0.91492 0.86043 0.93468 1.22099 0.96449 0.99299 0.99530 1.21722 0.98939 0.97853 0.97749 1.22339 0.99992 0.94199 1.01388 1.19915 0.89324 0.90166 0.85918 0.95861 1.21805 1.43565 1.00698 0.96028 0.92513 1.25839 0.97241 1.03097 0.91837 1.70770 1.31491 1.26219 1.25985 0.83509 0.76092 0.74987 0.75421 1.21291 1.21089 1.21279 1.88036 1.69377 1.20131 1.51051 1.21508 0.94208 0.98792 0.98202 0.95499 0.91931 0.91263 0.91250 0.92056 0.95431 0.92407 0.92502 0.90400 0.92895 0.91091 0.92586 0.91743 0.92605 0.93285 0.92641 0.92219 0.92795 0.91953 0.91781 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.31 60.06 0.56 0.83 16 2 N -0.54 -7.39 5.01 -243.18 -1.22 -8.61 16 3 C 0.02 0.19 8.82 60.06 0.53 0.72 16 4 C 0.09 1.38 2.09 -67.71 -0.14 1.24 16 5 H 0.10 1.81 7.68 -51.93 -0.40 1.41 16 6 C -0.15 -2.13 4.51 -26.73 -0.12 -2.25 16 7 C -0.11 -1.87 5.78 -26.73 -0.15 -2.02 16 8 C -0.14 -2.44 4.04 -26.74 -0.11 -2.55 16 9 C 0.12 2.17 0.68 -90.59 -0.06 2.11 16 10 C -0.14 -2.32 4.91 -26.59 -0.13 -2.45 16 11 C -0.13 -2.32 5.72 -26.55 -0.15 -2.47 16 12 C -0.14 -3.21 5.32 -26.59 -0.14 -3.35 16 13 C 0.20 5.10 1.95 -27.83 -0.05 5.05 16 14 H 0.02 0.63 5.18 -51.93 -0.27 0.36 16 15 C -0.58 -16.52 8.68 -34.44 -0.30 -16.82 16 16 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 17 C 0.02 0.68 5.44 -17.82 -0.10 0.58 16 18 N -0.91 -26.77 13.55 55.43 0.75 -26.02 16 19 Si 1.07 25.16 29.91 -169.99 -5.08 20.07 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 O -0.37 -8.46 8.55 -35.23 -0.30 -8.76 16 24 C -0.09 -1.42 4.01 -26.74 -0.11 -1.52 16 25 H 0.03 0.31 6.44 -51.93 -0.33 -0.02 16 26 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.77 6.33 -51.93 -0.33 0.44 16 29 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.03 0.30 6.28 -51.93 -0.33 -0.02 16 31 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 32 H 0.06 0.77 6.39 -51.93 -0.33 0.43 16 33 H 0.08 1.58 7.69 -51.93 -0.40 1.18 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.36 4.98 -51.93 -0.26 1.11 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 1.01 6.63 -51.92 -0.34 0.67 16 41 H 0.06 1.44 7.67 -51.93 -0.40 1.04 16 42 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.27 7.86 6.39 -40.82 -0.26 7.60 16 44 H 0.06 0.89 6.42 -51.93 -0.33 0.55 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -29.33 323.38 -9.21 -38.54 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.75 Total: 2.83 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -0.48 Total: -22.91 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.47 Total: -34.64 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.30 Total: -8.76 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.33 -9.21 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715291855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.348 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds