Wall clock time and date at job start Mon Mar 30 2020 07:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00022 * 2 1 4 4 C 1.46901 * 110.99917 * 123.95037 * 2 1 3 5 5 H 1.08996 * 109.47391 * 55.00422 * 4 2 1 6 6 C 1.53007 * 109.47198 * 294.99916 * 4 2 1 7 7 C 1.53002 * 109.43964 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47943 * 60.04230 * 7 6 4 9 9 C 1.52980 * 109.50552 * 300.03277 * 8 7 6 10 10 C 1.53099 * 109.42969 * 179.79380 * 9 8 7 11 11 C 1.53176 * 109.17335 * 62.46028 * 10 9 8 12 12 C 1.53178 * 109.03649 * 56.98071 * 11 10 9 13 13 C 1.53093 * 109.15234 * 303.00453 * 12 11 10 14 14 H 1.08995 * 109.48187 * 297.60958 * 13 12 11 15 15 C 1.50704 * 109.47466 * 177.58972 * 13 12 11 16 16 H 1.08000 * 119.99822 * 269.15056 * 15 13 12 17 17 C 1.37873 * 120.00122 * 89.15518 * 15 13 12 18 18 N 1.31515 * 120.00042 * 352.68479 * 17 15 13 19 19 Si 1.86797 * 120.00304 * 172.68110 * 17 15 13 20 20 H 1.48504 * 109.47142 * 270.00267 * 19 17 15 21 21 H 1.48497 * 109.47221 * 150.00174 * 19 17 15 22 22 H 1.48499 * 109.46764 * 30.00118 * 19 17 15 23 23 O 1.42878 * 109.53268 * 299.75855 * 9 8 7 24 24 C 1.52985 * 109.50674 * 59.87826 * 9 8 7 25 25 H 1.09006 * 109.47274 * 296.04817 * 1 2 3 26 26 H 1.08993 * 109.46964 * 56.04814 * 1 2 3 27 27 H 1.08998 * 109.47452 * 176.05237 * 1 2 3 28 28 H 1.09003 * 109.47366 * 183.95849 * 3 2 1 29 29 H 1.09003 * 109.46829 * 303.94515 * 3 2 1 30 30 H 1.08994 * 109.47424 * 63.95385 * 3 2 1 31 31 H 1.08997 * 109.47774 * 59.96287 * 6 4 2 32 32 H 1.09003 * 109.48090 * 299.94632 * 6 4 2 33 33 H 1.08997 * 109.46598 * 300.03750 * 7 6 4 34 34 H 1.08997 * 109.46930 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.46252 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.46464 * 60.04417 * 8 7 6 37 37 H 1.09001 * 109.51925 * 182.36791 * 10 9 8 38 38 H 1.08994 * 109.52075 * 302.49156 * 10 9 8 39 39 H 1.09000 * 109.54437 * 176.85399 * 11 10 9 40 40 H 1.09008 * 109.54392 * 297.02737 * 11 10 9 41 41 H 1.09001 * 109.53068 * 183.09907 * 12 11 10 42 42 H 1.08997 * 109.51758 * 62.90509 * 12 11 10 43 43 H 0.97003 * 119.99691 * 354.54754 * 18 17 15 44 44 H 1.09005 * 109.46487 * 60.12385 * 24 9 8 45 45 H 1.09005 * 109.46890 * 180.09882 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.5754 -1.7716 1.1241 6 6 1.6090 -0.0693 2.4440 7 6 2.1571 -0.8680 3.6284 8 6 3.6814 -0.9504 3.5265 9 6 4.0692 -1.6449 2.2198 10 6 5.5948 -1.7218 2.1172 11 6 6.1345 -2.5717 3.2717 12 6 5.4782 -3.9549 3.2230 13 6 3.9572 -3.7916 3.2835 14 1 3.6788 -3.3267 4.2292 15 6 3.3020 -5.1446 3.1765 16 1 3.0271 -5.5364 2.2084 17 6 3.0535 -5.8821 4.3146 18 7 3.5149 -5.4739 5.4765 19 14 2.0612 -7.4610 4.2062 20 1 0.6201 -7.1537 4.3905 21 1 2.5068 -8.3995 5.2673 22 1 2.2680 -8.0851 2.8747 23 8 3.5243 -2.9655 2.2007 24 6 3.5197 -0.8480 1.0351 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3634 -1.0252 -0.0707 28 1 3.0828 1.3433 -0.0709 29 1 1.5898 1.9162 -0.8526 30 1 1.7044 1.8724 0.9232 31 1 0.5231 -0.0098 2.5168 32 1 2.0299 0.9361 2.4581 33 1 1.7371 -1.8737 3.6138 34 1 1.8817 -0.3724 4.5593 35 1 4.0715 -1.5197 4.3701 36 1 4.1013 0.0554 3.5418 37 1 5.8734 -2.1785 1.1675 38 1 6.0149 -0.7177 2.1756 39 1 7.2149 -2.6769 3.1730 40 1 5.9003 -2.0887 4.2205 41 1 5.8150 -4.5481 4.0732 42 1 5.7542 -4.4565 2.2955 43 1 4.0957 -4.6984 5.5224 44 1 3.9394 0.1579 1.0480 45 1 3.7948 -1.3444 0.1044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715291855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:13 Heat of formation + Delta-G solvation = -82.023259 kcal Electronic energy + Delta-G solvation = -22658.190618 eV Core-core repulsion = 19673.763237 eV Total energy + Delta-G solvation = -2984.427381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.54976 -39.19482 -36.14289 -34.80708 -34.38938 -32.30604 -30.57844 -28.76004 -28.21803 -26.75464 -25.27808 -24.10383 -23.08007 -22.60581 -20.32088 -20.00679 -19.14552 -17.32033 -16.70979 -16.37962 -16.08251 -15.74806 -15.59694 -15.47926 -15.36421 -14.98203 -14.45488 -14.20867 -13.98178 -13.68790 -13.44139 -13.24244 -13.06583 -12.87058 -12.72178 -12.60451 -12.51339 -12.32836 -12.14086 -11.99022 -11.94719 -11.82773 -11.72964 -11.50429 -11.36772 -10.92175 -10.67444 -10.35822 -9.85602 -9.14916 -8.70999 -6.41217 1.50083 1.57841 1.77570 2.50344 2.96504 3.00986 3.32513 3.70202 3.81764 3.86839 4.05258 4.08886 4.12129 4.20443 4.29574 4.35511 4.45858 4.48414 4.51509 4.55254 4.57175 4.67893 4.71358 4.78296 4.81113 4.84696 4.90483 4.96915 5.01817 5.05842 5.07555 5.11375 5.19782 5.22601 5.26144 5.30359 5.40592 5.45365 5.57488 5.96821 6.10875 6.12800 6.21105 6.48616 6.97745 7.38145 8.67860 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.006576 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.028963 B = 4256.663830 C = 4988.572605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.554 5.554 3 C 0.015 3.985 4 C 0.094 3.906 5 H 0.052 0.948 6 C -0.134 4.134 7 C -0.109 4.109 8 C -0.137 4.137 9 C 0.106 3.894 10 C -0.132 4.132 11 C -0.119 4.119 12 C -0.135 4.135 13 C 0.211 3.789 14 H 0.001 0.999 15 C -0.606 4.606 16 H 0.038 0.962 17 C -0.020 4.020 18 N -0.928 5.928 19 Si 1.115 2.885 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.274 1.274 23 O -0.390 6.390 24 C -0.082 4.082 25 H 0.032 0.968 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.036 0.964 42 H 0.042 0.958 43 H 0.260 0.740 44 H 0.097 0.903 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 15.063 -7.608 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.276 5.276 3 C -0.132 4.132 4 C -0.015 4.015 5 H 0.071 0.929 6 C -0.173 4.173 7 C -0.147 4.147 8 C -0.174 4.174 9 C 0.066 3.934 10 C -0.170 4.170 11 C -0.156 4.156 12 C -0.173 4.173 13 C 0.154 3.846 14 H 0.019 0.981 15 C -0.644 4.644 16 H 0.057 0.943 17 C -0.219 4.219 18 N -0.565 5.565 19 Si 0.937 3.063 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.199 1.199 23 O -0.310 6.310 24 C -0.119 4.119 25 H 0.050 0.950 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.400 13.579 -7.310 15.485 hybrid contribution 0.603 1.101 0.348 1.303 sum -0.797 14.680 -6.962 16.267 Atomic orbital electron populations 1.22415 0.87046 1.01966 1.01195 1.62242 1.08507 1.14906 1.41964 1.22544 1.01365 0.88089 1.01216 1.21464 0.95351 0.96525 0.88115 0.92936 1.22066 1.00569 0.99813 0.94863 1.21298 0.95646 0.99293 0.98480 1.22081 0.96429 1.01202 0.97735 1.21596 0.92633 0.83953 0.95201 1.22104 0.95279 1.01082 0.98490 1.21663 1.00062 0.95078 0.98798 1.22140 0.98707 0.96859 0.99621 1.19596 0.90416 0.89029 0.85575 0.98135 1.22146 1.44162 1.02722 0.95367 0.94344 1.27204 0.97591 1.05774 0.91319 1.70873 1.32500 1.26483 1.26614 0.82968 0.75395 0.71776 0.76199 1.19933 1.20290 1.19885 1.87968 1.70377 1.22651 1.49982 1.21479 0.94348 0.99754 0.96338 0.94995 0.89780 0.92705 0.90739 0.90327 0.94662 0.91986 0.89883 0.95161 0.91561 0.93706 0.89001 0.91970 0.88595 0.90756 0.92407 0.94565 0.93927 0.93025 0.88431 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.31 127.69 1.19 1.67 16 2 N -0.55 -13.97 5.01 -923.30 -4.62 -18.59 16 3 C 0.02 0.29 8.82 127.69 1.13 1.42 16 4 C 0.09 2.85 2.09 44.92 0.09 2.94 16 5 H 0.05 2.05 7.68 -2.39 -0.02 2.03 16 6 C -0.13 -3.69 4.51 30.60 0.14 -3.55 16 7 C -0.11 -3.68 5.78 30.59 0.18 -3.50 16 8 C -0.14 -4.57 4.04 30.59 0.12 -4.45 16 9 C 0.11 3.77 0.68 -10.77 -0.01 3.77 16 10 C -0.13 -4.19 4.91 30.69 0.15 -4.04 16 11 C -0.12 -4.26 5.72 30.71 0.18 -4.09 16 12 C -0.13 -6.34 5.32 30.69 0.16 -6.18 16 13 C 0.21 11.10 1.95 29.88 0.06 11.15 16 14 H 0.00 0.06 5.18 -2.39 -0.01 0.05 16 15 C -0.61 -36.06 8.68 25.60 0.22 -35.83 16 16 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 17 C -0.02 -1.18 5.44 84.65 0.46 -0.72 16 18 N -0.93 -56.66 13.55 21.45 0.29 -56.37 16 19 Si 1.12 51.68 29.91 68.60 2.05 53.74 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 O -0.39 -18.68 8.55 -148.98 -1.27 -19.96 16 24 C -0.08 -2.42 4.01 30.59 0.12 -2.30 16 25 H 0.03 0.67 6.44 -2.38 -0.02 0.66 16 26 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.32 6.33 -2.39 -0.02 1.31 16 29 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 30 H 0.03 0.62 6.28 -2.39 -0.02 0.60 16 31 H 0.06 1.65 6.52 -2.39 -0.02 1.64 16 32 H 0.08 1.89 6.39 -2.39 -0.02 1.87 16 33 H 0.03 1.29 7.69 -2.39 -0.02 1.27 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.04 1.73 4.98 -2.39 -0.01 1.72 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 40 H 0.06 2.06 6.63 -2.38 -0.02 2.04 16 41 H 0.04 1.82 7.67 -2.39 -0.02 1.80 16 42 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.26 15.92 6.39 -92.71 -0.59 15.33 16 44 H 0.10 2.27 6.42 -2.38 -0.02 2.25 16 45 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -67.17 323.38 1.76 -65.40 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.12 Total: 19.48 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 4.19 Total: -43.70 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -4.33 Total: -74.96 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -1.27 Total: -19.96 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.74 kcal Total: -67.17 1.76 -65.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715291855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.621 kcal (2) G-P(sol) polarization free energy of solvation -67.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds