Wall clock time and date at job start Mon Mar 30 2020 07:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46908 * 111.00078 * 2 1 4 4 C 1.46898 * 110.99690 * 123.95192 * 2 1 3 5 5 C 1.53011 * 109.46130 * 175.00329 * 4 2 1 6 6 C 1.53014 * 109.45622 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.43207 * 299.98852 * 6 5 4 8 8 C 1.53100 * 109.34183 * 300.19826 * 7 6 5 9 9 C 1.53187 * 109.13346 * 297.53138 * 8 7 6 10 10 C 1.53177 * 109.09624 * 303.14703 * 9 8 7 11 11 C 1.53090 * 109.18731 * 56.92848 * 10 9 8 12 12 H 1.08997 * 109.47564 * 62.40370 * 11 10 9 13 13 C 1.50704 * 109.47914 * 182.41992 * 11 10 9 14 14 H 1.08000 * 119.99920 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99785 * 179.97438 * 13 11 10 16 16 N 1.31513 * 119.99897 * 0.02562 * 15 13 11 17 17 Si 1.86792 * 119.99912 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47211 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47104 * 120.00335 * 17 15 13 20 20 H 1.48501 * 109.47306 * 240.00157 * 17 15 13 21 21 O 1.42883 * 109.50332 * 180.20569 * 7 6 5 22 22 C 1.52982 * 109.48514 * 60.08412 * 7 6 5 23 23 C 1.52988 * 109.46839 * 295.03157 * 4 2 1 24 24 H 1.08997 * 109.47616 * 296.04928 * 1 2 3 25 25 H 1.09007 * 109.47043 * 56.04448 * 1 2 3 26 26 H 1.08997 * 109.47210 * 176.04022 * 1 2 3 27 27 H 1.08994 * 109.47097 * 183.94909 * 3 2 1 28 28 H 1.09003 * 109.46985 * 303.95350 * 3 2 1 29 29 H 1.08999 * 109.46833 * 63.95019 * 3 2 1 30 30 H 1.08996 * 109.46722 * 55.01642 * 4 2 1 31 31 H 1.08998 * 109.47378 * 59.99133 * 5 4 2 32 32 H 1.09002 * 109.47246 * 299.98046 * 5 4 2 33 33 H 1.08997 * 109.47398 * 180.02562 * 6 5 4 34 34 H 1.08990 * 109.48588 * 59.98375 * 6 5 4 35 35 H 1.09007 * 109.45657 * 177.68499 * 8 7 6 36 36 H 1.08997 * 109.60564 * 57.47644 * 8 7 6 37 37 H 1.09002 * 109.54781 * 183.23478 * 9 8 7 38 38 H 1.08999 * 109.54351 * 63.05381 * 9 8 7 39 39 H 1.09002 * 109.51918 * 176.84615 * 10 9 8 40 40 H 1.09003 * 109.51841 * 296.95618 * 10 9 8 41 41 H 0.97006 * 119.99970 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.47348 * 59.92204 * 22 7 6 43 43 H 1.08996 * 109.47995 * 179.97438 * 22 7 6 44 44 H 1.08997 * 109.47205 * 300.03267 * 23 4 2 45 45 H 1.08999 * 109.46790 * 60.02747 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5198 -0.8484 1.0351 6 6 4.0680 -1.6457 2.2204 7 6 3.6812 -0.9477 3.5258 8 6 4.2687 0.4660 3.5383 9 6 5.7972 0.3750 3.4950 10 6 6.2827 -0.4690 4.6775 11 6 5.6168 -1.8463 4.6195 12 1 5.9167 -2.3568 3.7044 13 6 6.0440 -2.6616 5.8128 14 1 6.7220 -2.2401 6.5401 15 6 5.5683 -3.9453 5.9766 16 7 4.7422 -4.4584 5.0912 17 14 6.0972 -4.9557 7.4560 18 1 7.0234 -4.1552 8.2965 19 1 4.9016 -5.3279 8.2542 20 1 6.7865 -6.1871 6.9936 21 8 4.1965 -1.6884 4.6337 22 6 2.1570 -0.8665 3.6289 23 6 1.6083 -0.0698 2.4438 24 1 -0.3634 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0710 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9164 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.5754 -1.7717 1.1238 31 1 3.9398 0.1573 1.0485 32 1 3.7951 -1.3448 0.1045 33 1 5.1540 -1.7042 2.1479 34 1 3.6479 -2.6513 2.2076 35 1 3.9601 0.9795 4.4490 36 1 3.9118 1.0181 2.6689 37 1 6.2242 1.3757 3.5615 38 1 6.1083 -0.0929 2.5609 39 1 7.3651 -0.5852 4.6220 40 1 6.0170 0.0259 5.6116 41 1 4.4073 -5.3615 5.2066 42 1 1.7378 -1.8726 3.6156 43 1 1.8816 -0.3697 4.5591 44 1 2.0274 0.9362 2.4574 45 1 0.5223 -0.0119 2.5166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715292188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:20 Heat of formation + Delta-G solvation = -55.176932 kcal Electronic energy + Delta-G solvation = -22576.079999 eV Core-core repulsion = 19592.816763 eV Total energy + Delta-G solvation = -2983.263236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09597 -37.77627 -34.52772 -32.53387 -32.31054 -30.56910 -29.53153 -27.65479 -26.91778 -25.06341 -23.75333 -22.40705 -22.07869 -20.60392 -19.32854 -17.59795 -16.52378 -16.06954 -15.43261 -14.85497 -14.67037 -14.46676 -14.36262 -14.06273 -13.70255 -13.17740 -12.86141 -12.64336 -12.43996 -12.08354 -11.93403 -11.76887 -11.67676 -11.60882 -11.25408 -11.16470 -10.92023 -10.77831 -10.64250 -10.53589 -10.30409 -10.29407 -10.08287 -9.86974 -9.58571 -9.26217 -8.73629 -8.41030 -8.17578 -7.72333 -5.97569 -4.08827 3.31579 3.39684 3.43385 4.01582 4.44612 4.84601 4.99045 5.05363 5.19972 5.27636 5.41269 5.45009 5.49366 5.57251 5.59246 5.62797 5.68388 5.75555 5.80678 5.84090 5.88654 5.92168 6.02373 6.12547 6.17006 6.28951 6.31397 6.34426 6.37677 6.46454 6.63507 6.68531 6.73883 6.80282 6.90968 6.95278 7.07152 7.10483 7.14311 7.18426 7.59834 7.93976 8.34706 8.84314 9.22118 9.61001 11.09803 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030674 B = 0.005517 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.607028 B = 5073.901555 C = 5540.063239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.542 5.542 3 C 0.017 3.983 4 C 0.084 3.916 5 C -0.108 4.108 6 C -0.136 4.136 7 C 0.118 3.882 8 C -0.139 4.139 9 C -0.121 4.121 10 C -0.144 4.144 11 C 0.219 3.781 12 H 0.019 0.981 13 C -0.527 4.527 14 H 0.062 0.938 15 C 0.079 3.921 16 N -0.859 5.859 17 Si 0.889 3.111 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 O -0.347 6.347 22 C -0.097 4.097 23 C -0.148 4.148 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.259 0.741 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 9.725 -8.978 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.131 4.131 4 C -0.024 4.024 5 C -0.146 4.146 6 C -0.174 4.174 7 C 0.077 3.923 8 C -0.177 4.177 9 C -0.158 4.158 10 C -0.182 4.182 11 C 0.163 3.837 12 H 0.036 0.964 13 C -0.564 4.564 14 H 0.080 0.920 15 C -0.127 4.127 16 N -0.495 5.495 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 O -0.266 6.266 22 C -0.135 4.135 23 C -0.187 4.187 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.040 9.264 -9.335 14.472 hybrid contribution 0.056 -0.020 1.362 1.363 sum -5.985 9.243 -7.973 13.595 Atomic orbital electron populations 1.22388 0.88015 1.02099 1.00209 1.62294 1.07448 1.13735 1.42946 1.22462 1.01224 0.89317 1.00138 1.21801 0.96104 0.97289 0.87169 1.21633 0.93452 1.00701 0.98800 1.22066 1.01494 0.99790 0.94018 1.21064 0.92502 0.90057 0.88690 1.22224 0.96152 0.98498 1.00791 1.21645 0.95535 0.99086 0.99562 1.22261 0.99935 0.99329 0.96698 1.19683 0.77846 0.88876 0.97262 0.96394 1.21063 1.28033 0.97449 1.09872 0.91961 1.25041 0.94139 0.97605 0.95923 1.70048 1.30159 1.15065 1.34207 0.86606 0.78478 0.80122 0.83156 1.19691 1.20914 1.20967 1.88366 1.24472 1.72299 1.41489 1.21311 0.94810 1.00489 0.96873 1.22201 1.00047 1.00252 0.96151 0.95349 0.91881 0.91509 0.91035 0.92036 0.95228 0.89982 0.91968 0.91848 0.91215 0.91089 0.92406 0.92425 0.93583 0.92485 0.92726 0.92760 0.93159 0.91372 0.92059 0.91598 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.31 60.06 0.56 0.78 16 2 N -0.54 -6.73 5.01 -243.18 -1.22 -7.94 16 3 C 0.02 0.18 8.82 60.07 0.53 0.71 16 4 C 0.08 1.18 2.23 -67.71 -0.15 1.03 16 5 C -0.11 -1.62 4.73 -26.72 -0.13 -1.75 16 6 C -0.14 -2.54 4.19 -26.72 -0.11 -2.66 16 7 C 0.12 2.32 0.86 -90.58 -0.08 2.24 16 8 C -0.14 -2.43 4.20 -26.58 -0.11 -2.54 16 9 C -0.12 -2.16 5.71 -26.54 -0.15 -2.31 16 10 C -0.14 -3.09 5.36 -26.59 -0.14 -3.24 16 11 C 0.22 5.59 2.17 -27.83 -0.06 5.53 16 12 H 0.02 0.50 6.34 -51.93 -0.33 0.17 16 13 C -0.53 -14.86 8.79 -34.44 -0.30 -15.16 16 14 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 15 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 16 N -0.86 -25.12 12.84 55.43 0.71 -24.41 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 O -0.35 -8.83 9.27 -35.23 -0.33 -9.16 16 22 C -0.10 -1.70 5.11 -26.75 -0.14 -1.84 16 23 C -0.15 -2.07 4.23 -26.75 -0.11 -2.19 16 24 H 0.03 0.29 6.44 -51.93 -0.33 -0.04 16 25 H 0.06 0.58 8.12 -51.93 -0.42 0.15 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.80 6.33 -51.93 -0.33 0.47 16 28 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.03 0.32 6.28 -51.93 -0.33 0.00 16 30 H 0.08 1.23 8.13 -51.93 -0.42 0.80 16 31 H 0.06 0.89 4.64 -51.93 -0.24 0.65 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.39 4.97 -51.93 -0.26 1.14 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.88 4.80 -51.93 -0.25 0.63 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.00 6.62 -51.93 -0.34 0.65 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.07 0.90 4.72 -51.93 -0.24 0.66 16 45 H 0.06 0.76 6.52 -51.93 -0.34 0.42 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -29.44 320.43 -9.12 -38.56 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.60 Total: 0.95 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -0.49 Total: -19.24 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: -0.51 Total: -32.35 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.33 Total: -9.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.44 -9.12 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715292188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.615 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds