Wall clock time and date at job start Mon Mar 30 2020 07:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46908 * 111.00078 * 2 1 4 4 C 1.46898 * 110.99690 * 123.95192 * 2 1 3 5 5 C 1.53011 * 109.46130 * 175.00329 * 4 2 1 6 6 C 1.53014 * 109.45622 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.43207 * 299.98852 * 6 5 4 8 8 C 1.53100 * 109.34183 * 300.19826 * 7 6 5 9 9 C 1.53187 * 109.13346 * 297.53138 * 8 7 6 10 10 C 1.53177 * 109.09624 * 303.14703 * 9 8 7 11 11 C 1.53090 * 109.18731 * 56.92848 * 10 9 8 12 12 H 1.08997 * 109.47564 * 62.40370 * 11 10 9 13 13 C 1.50704 * 109.47914 * 182.41992 * 11 10 9 14 14 H 1.08000 * 119.99920 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99785 * 179.97438 * 13 11 10 16 16 N 1.31513 * 119.99897 * 0.02562 * 15 13 11 17 17 Si 1.86792 * 119.99912 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47211 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47104 * 120.00335 * 17 15 13 20 20 H 1.48501 * 109.47306 * 240.00157 * 17 15 13 21 21 O 1.42883 * 109.50332 * 180.20569 * 7 6 5 22 22 C 1.52982 * 109.48514 * 60.08412 * 7 6 5 23 23 C 1.52988 * 109.46839 * 295.03157 * 4 2 1 24 24 H 1.08997 * 109.47616 * 296.04928 * 1 2 3 25 25 H 1.09007 * 109.47043 * 56.04448 * 1 2 3 26 26 H 1.08997 * 109.47210 * 176.04022 * 1 2 3 27 27 H 1.08994 * 109.47097 * 183.94909 * 3 2 1 28 28 H 1.09003 * 109.46985 * 303.95350 * 3 2 1 29 29 H 1.08999 * 109.46833 * 63.95019 * 3 2 1 30 30 H 1.08996 * 109.46722 * 55.01642 * 4 2 1 31 31 H 1.08998 * 109.47378 * 59.99133 * 5 4 2 32 32 H 1.09002 * 109.47246 * 299.98046 * 5 4 2 33 33 H 1.08997 * 109.47398 * 180.02562 * 6 5 4 34 34 H 1.08990 * 109.48588 * 59.98375 * 6 5 4 35 35 H 1.09007 * 109.45657 * 177.68499 * 8 7 6 36 36 H 1.08997 * 109.60564 * 57.47644 * 8 7 6 37 37 H 1.09002 * 109.54781 * 183.23478 * 9 8 7 38 38 H 1.08999 * 109.54351 * 63.05381 * 9 8 7 39 39 H 1.09002 * 109.51918 * 176.84615 * 10 9 8 40 40 H 1.09003 * 109.51841 * 296.95618 * 10 9 8 41 41 H 0.97006 * 119.99970 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.47348 * 59.92204 * 22 7 6 43 43 H 1.08996 * 109.47995 * 179.97438 * 22 7 6 44 44 H 1.08997 * 109.47205 * 300.03267 * 23 4 2 45 45 H 1.08999 * 109.46790 * 60.02747 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5198 -0.8484 1.0351 6 6 4.0680 -1.6457 2.2204 7 6 3.6812 -0.9477 3.5258 8 6 4.2687 0.4660 3.5383 9 6 5.7972 0.3750 3.4950 10 6 6.2827 -0.4690 4.6775 11 6 5.6168 -1.8463 4.6195 12 1 5.9167 -2.3568 3.7044 13 6 6.0440 -2.6616 5.8128 14 1 6.7220 -2.2401 6.5401 15 6 5.5683 -3.9453 5.9766 16 7 4.7422 -4.4584 5.0912 17 14 6.0972 -4.9557 7.4560 18 1 7.0234 -4.1552 8.2965 19 1 4.9016 -5.3279 8.2542 20 1 6.7865 -6.1871 6.9936 21 8 4.1965 -1.6884 4.6337 22 6 2.1570 -0.8665 3.6289 23 6 1.6083 -0.0698 2.4438 24 1 -0.3634 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0710 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9164 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.5754 -1.7717 1.1238 31 1 3.9398 0.1573 1.0485 32 1 3.7951 -1.3448 0.1045 33 1 5.1540 -1.7042 2.1479 34 1 3.6479 -2.6513 2.2076 35 1 3.9601 0.9795 4.4490 36 1 3.9118 1.0181 2.6689 37 1 6.2242 1.3757 3.5615 38 1 6.1083 -0.0929 2.5609 39 1 7.3651 -0.5852 4.6220 40 1 6.0170 0.0259 5.6116 41 1 4.4073 -5.3615 5.2066 42 1 1.7378 -1.8726 3.6156 43 1 1.8816 -0.3697 4.5591 44 1 2.0274 0.9362 2.4574 45 1 0.5223 -0.0119 2.5166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715292188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:19 Heat of formation + Delta-G solvation = -73.632521 kcal Electronic energy + Delta-G solvation = -22576.880293 eV Core-core repulsion = 19592.816763 eV Total energy + Delta-G solvation = -2984.063531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51775 -39.12197 -36.00499 -34.37215 -34.12853 -31.94286 -31.10884 -28.59581 -28.39148 -26.86717 -24.88350 -23.96789 -23.63310 -22.10127 -20.65128 -19.09917 -18.60577 -17.46888 -16.77349 -16.50795 -16.20906 -15.84581 -15.46283 -15.43625 -15.13854 -14.69031 -14.42534 -14.12984 -13.90008 -13.56897 -13.18937 -12.97573 -12.92451 -12.84410 -12.79181 -12.60875 -12.56812 -12.38011 -12.18660 -12.05733 -11.87936 -11.80210 -11.61210 -11.49103 -11.09505 -10.93272 -10.74936 -10.30757 -9.54872 -9.13522 -8.12335 -6.31831 1.39013 1.40547 1.52570 2.41097 2.96338 3.11603 3.57948 3.73296 3.82311 4.09577 4.11324 4.15434 4.24195 4.32853 4.37220 4.42234 4.45863 4.54764 4.58963 4.62622 4.71147 4.75109 4.75491 4.87499 4.89592 4.90822 5.02345 5.04999 5.11533 5.14370 5.16038 5.19818 5.22544 5.26338 5.33436 5.36434 5.56593 5.57418 5.64889 5.85005 6.13948 6.20479 6.27382 6.71592 7.32310 7.45518 8.94914 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030674 B = 0.005517 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.607028 B = 5073.901555 C = 5540.063239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.014 3.986 4 C 0.090 3.910 5 C -0.096 4.096 6 C -0.126 4.126 7 C 0.105 3.895 8 C -0.131 4.131 9 C -0.116 4.116 10 C -0.139 4.139 11 C 0.219 3.781 12 H -0.012 1.012 13 C -0.554 4.554 14 H 0.060 0.940 15 C 0.027 3.973 16 N -0.893 5.893 17 Si 0.957 3.043 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.275 1.275 21 O -0.384 6.384 22 C -0.094 4.094 23 C -0.133 4.133 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.034 0.966 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.259 0.741 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 11.923 -9.762 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.134 4.134 4 C -0.019 4.019 5 C -0.134 4.134 6 C -0.164 4.164 7 C 0.065 3.935 8 C -0.168 4.168 9 C -0.153 4.153 10 C -0.177 4.177 11 C 0.164 3.836 12 H 0.006 0.994 13 C -0.592 4.592 14 H 0.078 0.922 15 C -0.176 4.176 16 N -0.530 5.530 17 Si 0.782 3.218 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.201 1.201 21 O -0.304 6.304 22 C -0.132 4.132 23 C -0.172 4.172 24 H 0.051 0.949 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.479 11.478 -10.129 16.623 hybrid contribution 0.163 -0.713 1.568 1.730 sum -6.316 10.765 -8.561 15.135 Atomic orbital electron populations 1.22457 0.86752 1.02415 1.01218 1.62269 1.08656 1.14679 1.41560 1.22550 1.01262 0.88407 1.01202 1.21615 0.95150 0.97084 0.88013 1.21516 0.94331 1.00694 0.96809 1.21908 1.00220 0.98614 0.95668 1.21430 0.93737 0.91094 0.87276 1.22159 0.95786 0.96717 1.02143 1.21622 0.95826 1.00023 0.97812 1.22131 0.99822 0.97563 0.98216 1.19478 0.78578 0.90719 0.94858 0.99435 1.21510 1.28404 0.98564 1.10689 0.92215 1.25872 0.94130 0.98792 0.98769 1.70186 1.31381 1.15395 1.36060 0.85543 0.78139 0.78574 0.79552 1.18828 1.20726 1.20093 1.88240 1.24172 1.73856 1.44103 1.21294 0.93401 0.99834 0.98673 1.22105 1.00922 0.99972 0.94216 0.94939 0.90070 0.91802 0.91122 0.90268 0.94767 0.91586 0.90247 0.91517 0.92996 0.94677 0.92548 0.89219 0.90246 0.92177 0.92378 0.93438 0.93172 0.93863 0.92384 0.90157 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.31 127.69 1.19 1.54 16 2 N -0.55 -12.07 5.01 -923.27 -4.62 -16.69 16 3 C 0.01 0.24 8.82 127.69 1.13 1.37 16 4 C 0.09 2.38 2.23 44.92 0.10 2.48 16 5 C -0.10 -2.76 4.73 30.60 0.14 -2.62 16 6 C -0.13 -4.86 4.19 30.60 0.13 -4.73 16 7 C 0.10 4.17 0.86 -10.77 -0.01 4.16 16 8 C -0.13 -4.30 4.20 30.69 0.13 -4.18 16 9 C -0.12 -3.90 5.71 30.72 0.18 -3.73 16 10 C -0.14 -5.98 5.36 30.68 0.16 -5.82 16 11 C 0.22 11.64 2.17 29.88 0.06 11.71 16 12 H -0.01 -0.68 6.34 -2.39 -0.02 -0.70 16 13 C -0.55 -32.29 8.79 25.60 0.23 -32.07 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.03 1.56 5.40 84.65 0.46 2.02 16 16 N -0.89 -54.43 12.84 21.45 0.28 -54.15 16 17 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 18 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 O -0.38 -20.28 9.27 -148.98 -1.38 -21.67 16 22 C -0.09 -3.31 5.11 30.58 0.16 -3.15 16 23 C -0.13 -3.47 4.23 30.58 0.13 -3.34 16 24 H 0.03 0.57 6.44 -2.39 -0.02 0.55 16 25 H 0.08 1.20 8.12 -2.38 -0.02 1.18 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.29 6.33 -2.39 -0.02 1.27 16 28 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 29 H 0.03 0.59 6.28 -2.39 -0.01 0.58 16 30 H 0.07 1.96 8.13 -2.39 -0.02 1.95 16 31 H 0.08 2.03 4.64 -2.39 -0.01 2.02 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 2.16 4.97 -2.39 -0.01 2.15 16 34 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.09 2.39 4.80 -2.39 -0.01 2.38 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 2.00 6.62 -2.39 -0.02 1.99 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 42 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.08 1.89 4.72 -2.39 -0.01 1.88 16 45 H 0.07 1.74 6.52 -2.39 -0.02 1.73 16 Total: -1.00 -66.21 320.43 1.43 -64.78 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.96 Total: 17.06 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 4.18 Total: -36.36 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -4.35 Total: -70.84 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.38 Total: -21.67 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.21 1.43 -64.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715292188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.857 kcal (2) G-P(sol) polarization free energy of solvation -66.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds