Wall clock time and date at job start Mon Mar 30 2020 07:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46902 * 110.99971 * 2 1 4 4 C 1.46902 * 111.00442 * 123.95458 * 2 1 3 5 5 C 1.52991 * 109.47894 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47768 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.50190 * 59.97225 * 6 5 4 8 8 C 1.53099 * 109.40860 * 180.18537 * 7 6 5 9 9 C 1.53167 * 109.16891 * 182.41484 * 8 7 6 10 10 C 1.53176 * 109.03148 * 56.98545 * 9 8 7 11 11 C 1.53093 * 109.15398 * 302.99339 * 10 9 8 12 12 H 1.09002 * 109.48092 * 297.62580 * 11 10 9 13 13 C 1.50699 * 109.48628 * 177.59957 * 11 10 9 14 14 H 1.08004 * 119.99965 * 0.02562 * 13 11 10 15 15 C 1.37878 * 120.00128 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99948 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99900 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47225 * 90.00655 * 17 15 13 19 19 H 1.48503 * 109.47042 * 210.00111 * 17 15 13 20 20 H 1.48495 * 109.47562 * 330.00310 * 17 15 13 21 21 O 1.42878 * 109.52920 * 60.22897 * 7 6 5 22 22 C 1.52984 * 109.50013 * 300.11057 * 7 6 5 23 23 C 1.52994 * 109.50492 * 59.90098 * 22 7 6 24 24 H 1.08997 * 109.47482 * 296.04437 * 1 2 3 25 25 H 1.09000 * 109.47336 * 56.05010 * 1 2 3 26 26 H 1.09007 * 109.46949 * 176.04992 * 1 2 3 27 27 H 1.09007 * 109.47056 * 183.95870 * 3 2 1 28 28 H 1.08998 * 109.46748 * 303.94942 * 3 2 1 29 29 H 1.08995 * 109.47297 * 63.95770 * 3 2 1 30 30 H 1.09005 * 109.47319 * 300.01169 * 4 2 1 31 31 H 1.09001 * 109.47374 * 59.97011 * 5 4 2 32 32 H 1.09003 * 109.47209 * 299.96996 * 5 4 2 33 33 H 1.08991 * 109.46520 * 299.96396 * 6 5 4 34 34 H 1.08997 * 109.46462 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.51494 * 302.32200 * 8 7 6 36 36 H 1.09002 * 109.52385 * 62.50263 * 8 7 6 37 37 H 1.09008 * 109.54201 * 176.84961 * 9 8 7 38 38 H 1.09004 * 109.54610 * 297.02622 * 9 8 7 39 39 H 1.08998 * 109.52494 * 183.09556 * 10 9 8 40 40 H 1.08998 * 109.52776 * 62.89988 * 10 9 8 41 41 H 0.97003 * 119.99825 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.46363 * 179.90709 * 22 7 6 43 43 H 1.08999 * 109.47027 * 299.88798 * 22 7 6 44 44 H 1.09001 * 109.47593 * 180.02562 * 23 22 7 45 45 H 1.09003 * 109.47393 * 60.01316 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5248 -0.7438 1.1034 6 6 4.0732 -1.5410 2.2886 7 6 3.5820 -2.9874 2.2022 8 6 4.1282 -3.7820 3.3915 9 6 3.6832 -5.2424 3.2675 10 6 4.1666 -5.7995 1.9250 11 6 3.6184 -4.9274 0.7925 12 1 2.5292 -4.9700 0.7956 13 6 4.1375 -5.4339 -0.5284 14 1 4.7924 -6.2922 -0.5580 15 6 3.7763 -4.8018 -1.6993 16 7 2.9792 -3.7564 -1.6633 17 14 4.4192 -5.4302 -3.3367 18 1 3.4779 -6.4403 -3.8833 19 1 4.5377 -4.2974 -4.2896 20 1 5.7529 -6.0524 -3.1391 21 8 4.0429 -3.5765 0.9849 22 6 2.0527 -3.0101 2.2343 23 6 1.5050 -2.2126 1.0491 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0828 1.3432 -0.0710 28 1 1.5897 1.9162 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.6458 -0.3202 2.0688 31 1 3.8748 0.2867 1.1656 32 1 3.8740 -1.1905 0.1724 33 1 3.7246 -1.0940 3.2195 34 1 5.1628 -1.5254 2.2638 35 1 5.2170 -3.7318 3.3937 36 1 3.7414 -3.3608 4.3195 37 1 4.1150 -5.8254 4.0811 38 1 2.5957 -5.2977 3.3165 39 1 3.8074 -6.8215 1.8042 40 1 5.2562 -5.7898 1.8976 41 1 2.7248 -3.3118 -2.4871 42 1 1.7034 -4.0407 2.1711 43 1 1.7022 -2.5643 3.1651 44 1 0.4154 -2.2288 1.0726 45 1 1.8551 -2.6587 0.1181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715292193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:23 Heat of formation + Delta-G solvation = -55.374746 kcal Electronic energy + Delta-G solvation = -22938.310848 eV Core-core repulsion = 19955.039034 eV Total energy + Delta-G solvation = -2983.271814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.60811 -37.43104 -34.27081 -32.72265 -32.02252 -30.42525 -29.82275 -27.17869 -26.83853 -24.99208 -23.08623 -21.97558 -21.74394 -20.46452 -19.09452 -18.05157 -16.49112 -15.71705 -15.09885 -14.65930 -14.35182 -14.26612 -13.96627 -13.82934 -13.56147 -13.12707 -12.66659 -12.35187 -12.25101 -11.98603 -11.89486 -11.81945 -11.52503 -11.16642 -10.93061 -10.87539 -10.79149 -10.69676 -10.34140 -10.30856 -10.21043 -10.08954 -9.88464 -9.79785 -9.40390 -9.07845 -8.65987 -8.32861 -7.85175 -7.65908 -5.89352 -4.01291 3.36422 3.44222 3.47036 4.35519 4.49976 5.01182 5.28040 5.42275 5.45102 5.53307 5.54997 5.63548 5.67550 5.74790 5.77453 5.86106 5.90181 6.01195 6.03739 6.08556 6.12494 6.22477 6.24233 6.27611 6.34067 6.36465 6.44946 6.48873 6.57754 6.65305 6.72036 6.85255 6.93185 7.01519 7.03478 7.13713 7.22832 7.51026 7.53307 7.64222 7.77172 8.06582 8.41541 8.90238 9.27356 9.68149 11.16178 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.009209 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.958365 B = 3039.702509 C = 4343.318145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.533 5.533 3 C 0.024 3.976 4 C 0.100 3.900 5 C -0.106 4.106 6 C -0.096 4.096 7 C 0.114 3.886 8 C -0.139 4.139 9 C -0.121 4.121 10 C -0.145 4.145 11 C 0.219 3.781 12 H 0.018 0.982 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.082 3.918 16 N -0.847 5.847 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.276 1.276 21 O -0.338 6.338 22 C -0.131 4.131 23 C -0.126 4.126 24 H 0.014 0.986 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.015 0.985 30 H 0.018 0.982 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.261 0.739 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.038 0.962 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 6.439 7.380 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.257 5.257 3 C -0.124 4.124 4 C -0.007 4.007 5 C -0.144 4.144 6 C -0.134 4.134 7 C 0.073 3.927 8 C -0.177 4.177 9 C -0.158 4.158 10 C -0.183 4.183 11 C 0.164 3.836 12 H 0.035 0.965 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.124 4.124 16 N -0.483 5.483 17 Si 0.714 3.286 18 H -0.209 1.209 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.258 6.258 22 C -0.169 4.169 23 C -0.163 4.163 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.659 6.457 6.701 9.678 hybrid contribution -0.160 0.030 0.216 0.270 sum -2.819 6.487 6.917 9.893 Atomic orbital electron populations 1.22372 0.88251 1.02434 0.99135 1.61919 1.07012 1.12539 1.44221 1.22398 1.01326 0.89418 0.99263 1.21570 0.95436 0.94646 0.89086 1.21521 0.93717 0.98130 1.01038 1.21417 1.00341 0.94294 0.97366 1.21134 0.91959 0.92095 0.87551 1.22155 1.00856 0.96283 0.98393 1.21640 1.00281 0.95673 0.98223 1.22273 1.00768 0.99922 0.95331 1.19664 0.94203 0.78369 0.91383 0.96476 1.20954 1.32173 1.13782 0.89758 0.92271 1.24984 0.94347 0.94399 0.98694 1.69834 1.32529 1.18600 1.27324 0.86712 0.79338 0.78355 0.84151 1.20859 1.21194 1.20077 1.88372 1.73681 1.29149 1.34552 1.21998 0.97050 1.00526 0.97314 1.21816 0.97777 0.93372 1.03333 0.96744 0.92141 0.90815 0.91024 0.92137 0.96688 0.96417 0.93685 0.88666 0.92825 0.91936 0.92086 0.93025 0.93593 0.92589 0.92823 0.92738 0.92887 0.91540 0.93992 0.94284 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.21 60.06 0.55 0.95 16 2 N -0.53 -9.16 4.89 -243.18 -1.19 -10.35 16 3 C 0.02 0.35 9.11 60.07 0.55 0.90 16 4 C 0.10 1.80 1.95 -67.71 -0.13 1.66 16 5 C -0.11 -1.96 4.70 -26.74 -0.13 -2.08 16 6 C -0.10 -1.70 4.94 -26.73 -0.13 -1.83 16 7 C 0.11 2.23 0.68 -90.58 -0.06 2.17 16 8 C -0.14 -2.45 4.91 -26.59 -0.13 -2.58 16 9 C -0.12 -2.16 5.72 -26.55 -0.15 -2.32 16 10 C -0.14 -3.08 5.36 -26.59 -0.14 -3.22 16 11 C 0.22 5.46 2.17 -27.84 -0.06 5.40 16 12 H 0.02 0.47 6.35 -51.93 -0.33 0.14 16 13 C -0.53 -14.58 8.79 -34.44 -0.30 -14.88 16 14 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 15 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 16 N -0.85 -23.52 11.28 55.43 0.63 -22.89 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 O -0.34 -8.25 7.95 -35.23 -0.28 -8.53 16 22 C -0.13 -2.49 4.03 -26.74 -0.11 -2.60 16 23 C -0.13 -2.50 4.83 -26.73 -0.13 -2.63 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.81 8.12 -51.93 -0.42 0.38 16 26 H 0.07 1.16 6.30 -51.93 -0.33 0.83 16 27 H 0.07 1.03 6.24 -51.92 -0.32 0.71 16 28 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.73 6.34 -51.93 -0.33 0.40 16 32 H 0.09 2.15 7.69 -51.93 -0.40 1.75 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 38 H 0.06 0.98 6.62 -51.93 -0.34 0.64 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.07 1.34 4.98 -51.93 -0.26 1.08 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.73 6.40 -51.93 -0.33 0.39 16 45 H 0.14 3.27 6.07 -51.93 -0.32 2.95 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -27.93 325.63 -9.42 -37.35 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.99 Total: 2.17 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.47 Total: -18.90 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: -0.56 Total: -33.24 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.28 Total: -8.53 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.93 -9.42 -37.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715292193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.021 kcal (2) G-P(sol) polarization free energy of solvation -27.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds