Wall clock time and date at job start Mon Mar 30 2020 07:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46902 * 110.99971 * 2 1 4 4 C 1.46902 * 111.00442 * 123.95458 * 2 1 3 5 5 C 1.52991 * 109.47894 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47768 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.50190 * 59.97225 * 6 5 4 8 8 C 1.53099 * 109.40860 * 180.18537 * 7 6 5 9 9 C 1.53167 * 109.16891 * 182.41484 * 8 7 6 10 10 C 1.53176 * 109.03148 * 56.98545 * 9 8 7 11 11 C 1.53093 * 109.15398 * 302.99339 * 10 9 8 12 12 H 1.09002 * 109.48092 * 297.62580 * 11 10 9 13 13 C 1.50699 * 109.48628 * 177.59957 * 11 10 9 14 14 H 1.08004 * 119.99965 * 0.02562 * 13 11 10 15 15 C 1.37878 * 120.00128 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99948 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99900 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47225 * 90.00655 * 17 15 13 19 19 H 1.48503 * 109.47042 * 210.00111 * 17 15 13 20 20 H 1.48495 * 109.47562 * 330.00310 * 17 15 13 21 21 O 1.42878 * 109.52920 * 60.22897 * 7 6 5 22 22 C 1.52984 * 109.50013 * 300.11057 * 7 6 5 23 23 C 1.52994 * 109.50492 * 59.90098 * 22 7 6 24 24 H 1.08997 * 109.47482 * 296.04437 * 1 2 3 25 25 H 1.09000 * 109.47336 * 56.05010 * 1 2 3 26 26 H 1.09007 * 109.46949 * 176.04992 * 1 2 3 27 27 H 1.09007 * 109.47056 * 183.95870 * 3 2 1 28 28 H 1.08998 * 109.46748 * 303.94942 * 3 2 1 29 29 H 1.08995 * 109.47297 * 63.95770 * 3 2 1 30 30 H 1.09005 * 109.47319 * 300.01169 * 4 2 1 31 31 H 1.09001 * 109.47374 * 59.97011 * 5 4 2 32 32 H 1.09003 * 109.47209 * 299.96996 * 5 4 2 33 33 H 1.08991 * 109.46520 * 299.96396 * 6 5 4 34 34 H 1.08997 * 109.46462 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.51494 * 302.32200 * 8 7 6 36 36 H 1.09002 * 109.52385 * 62.50263 * 8 7 6 37 37 H 1.09008 * 109.54201 * 176.84961 * 9 8 7 38 38 H 1.09004 * 109.54610 * 297.02622 * 9 8 7 39 39 H 1.08998 * 109.52494 * 183.09556 * 10 9 8 40 40 H 1.08998 * 109.52776 * 62.89988 * 10 9 8 41 41 H 0.97003 * 119.99825 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.46363 * 179.90709 * 22 7 6 43 43 H 1.08999 * 109.47027 * 299.88798 * 22 7 6 44 44 H 1.09001 * 109.47593 * 180.02562 * 23 22 7 45 45 H 1.09003 * 109.47393 * 60.01316 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5248 -0.7438 1.1034 6 6 4.0732 -1.5410 2.2886 7 6 3.5820 -2.9874 2.2022 8 6 4.1282 -3.7820 3.3915 9 6 3.6832 -5.2424 3.2675 10 6 4.1666 -5.7995 1.9250 11 6 3.6184 -4.9274 0.7925 12 1 2.5292 -4.9700 0.7956 13 6 4.1375 -5.4339 -0.5284 14 1 4.7924 -6.2922 -0.5580 15 6 3.7763 -4.8018 -1.6993 16 7 2.9792 -3.7564 -1.6633 17 14 4.4192 -5.4302 -3.3367 18 1 3.4779 -6.4403 -3.8833 19 1 4.5377 -4.2974 -4.2896 20 1 5.7529 -6.0524 -3.1391 21 8 4.0429 -3.5765 0.9849 22 6 2.0527 -3.0101 2.2343 23 6 1.5050 -2.2126 1.0491 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0828 1.3432 -0.0710 28 1 1.5897 1.9162 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.6458 -0.3202 2.0688 31 1 3.8748 0.2867 1.1656 32 1 3.8740 -1.1905 0.1724 33 1 3.7246 -1.0940 3.2195 34 1 5.1628 -1.5254 2.2638 35 1 5.2170 -3.7318 3.3937 36 1 3.7414 -3.3608 4.3195 37 1 4.1150 -5.8254 4.0811 38 1 2.5957 -5.2977 3.3165 39 1 3.8074 -6.8215 1.8042 40 1 5.2562 -5.7898 1.8976 41 1 2.7248 -3.3118 -2.4871 42 1 1.7034 -4.0407 2.1711 43 1 1.7022 -2.5643 3.1651 44 1 0.4154 -2.2288 1.0726 45 1 1.8551 -2.6587 0.1181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715292193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:22 Heat of formation + Delta-G solvation = -71.737624 kcal Electronic energy + Delta-G solvation = -22939.020396 eV Core-core repulsion = 19955.039034 eV Total energy + Delta-G solvation = -2983.981362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14977 -38.86080 -35.84199 -34.48943 -33.83918 -31.92380 -31.43446 -28.52668 -28.36027 -26.69047 -24.54500 -23.49015 -23.39421 -21.98482 -20.53946 -19.66806 -18.50776 -17.16741 -16.60612 -16.50814 -16.01688 -15.64306 -15.40145 -15.21699 -15.11320 -14.57369 -14.28368 -14.11740 -13.62218 -13.49910 -13.27792 -13.09216 -12.96447 -12.79371 -12.72979 -12.54237 -12.29086 -12.19501 -12.04451 -11.99081 -11.77039 -11.60512 -11.55946 -11.37284 -11.01125 -10.76522 -10.58573 -10.16280 -9.42692 -9.07434 -7.96938 -6.16848 1.42776 1.45062 1.53850 2.47938 3.09814 3.18369 3.68822 3.88355 4.04036 4.10157 4.20659 4.24448 4.34263 4.35730 4.48944 4.52871 4.55840 4.62904 4.66349 4.73199 4.78721 4.79596 4.85075 4.87455 4.95055 5.00213 5.03720 5.04572 5.12577 5.18160 5.18497 5.26566 5.34100 5.41439 5.50872 5.62150 5.66332 5.72615 5.90099 6.08036 6.31166 6.35682 6.43639 6.82111 7.44462 7.57936 9.05020 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.009209 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.958365 B = 3039.702509 C = 4343.318145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.564 5.564 3 C 0.027 3.973 4 C 0.109 3.891 5 C -0.099 4.099 6 C -0.094 4.094 7 C 0.101 3.899 8 C -0.135 4.135 9 C -0.115 4.115 10 C -0.142 4.142 11 C 0.224 3.776 12 H -0.011 1.011 13 C -0.559 4.559 14 H 0.051 0.949 15 C 0.038 3.962 16 N -0.862 5.862 17 Si 0.945 3.055 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 O -0.366 6.366 22 C -0.125 4.125 23 C -0.126 4.126 24 H 0.031 0.969 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.257 0.743 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.043 0.957 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 7.664 9.194 12.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.288 5.288 3 C -0.121 4.121 4 C 0.001 3.999 5 C -0.137 4.137 6 C -0.132 4.132 7 C 0.060 3.940 8 C -0.173 4.173 9 C -0.152 4.152 10 C -0.180 4.180 11 C 0.168 3.832 12 H 0.007 0.993 13 C -0.596 4.596 14 H 0.069 0.931 15 C -0.167 4.167 16 N -0.497 5.497 17 Si 0.771 3.229 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.199 1.199 21 O -0.286 6.286 22 C -0.163 4.163 23 C -0.164 4.164 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.789 7.680 8.521 11.806 hybrid contribution -0.148 -0.327 -0.366 0.512 sum -2.937 7.353 8.156 11.367 Atomic orbital electron populations 1.22343 0.87105 1.01803 1.00594 1.61863 1.08339 1.14227 1.44349 1.22405 1.00914 0.88112 1.00696 1.21415 0.94839 0.93473 0.90175 1.21400 0.94293 0.99015 0.98953 1.21458 1.00280 0.92969 0.98475 1.21492 0.92477 0.93354 0.86648 1.22130 1.00775 0.95664 0.98695 1.21603 1.00563 0.96318 0.96754 1.22157 0.99977 0.99444 0.96373 1.19380 0.92434 0.79597 0.91744 0.99331 1.21316 1.32401 1.14129 0.91784 0.93064 1.25671 0.94677 0.94709 1.01646 1.70013 1.33059 1.19147 1.27509 0.85794 0.78801 0.77838 0.80452 1.20087 1.21113 1.19937 1.88270 1.74039 1.28767 1.37482 1.21937 0.96647 0.99544 0.98175 1.21707 0.97998 0.94903 1.01757 0.95094 0.90749 0.92529 0.91651 0.90870 0.94997 0.94594 0.91435 0.93784 0.89369 0.92129 0.92267 0.89626 0.90706 0.92307 0.92836 0.93638 0.93377 0.93423 0.90999 0.93882 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.21 127.69 1.18 2.02 16 2 N -0.56 -18.79 4.89 -923.28 -4.51 -23.30 16 3 C 0.03 0.71 9.11 127.69 1.16 1.87 16 4 C 0.11 3.76 1.95 44.92 0.09 3.84 16 5 C -0.10 -3.55 4.70 30.59 0.14 -3.41 16 6 C -0.09 -3.13 4.94 30.59 0.15 -2.98 16 7 C 0.10 3.84 0.68 -10.77 -0.01 3.84 16 8 C -0.13 -4.40 4.91 30.68 0.15 -4.25 16 9 C -0.12 -3.90 5.72 30.71 0.18 -3.72 16 10 C -0.14 -6.05 5.36 30.68 0.16 -5.89 16 11 C 0.22 11.54 2.17 29.88 0.06 11.61 16 12 H -0.01 -0.60 6.35 -2.39 -0.02 -0.62 16 13 C -0.56 -31.94 8.79 25.60 0.23 -31.71 16 14 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 15 C 0.04 2.13 5.40 84.65 0.46 2.59 16 16 N -0.86 -49.88 11.28 21.45 0.24 -49.63 16 17 Si 0.94 44.85 29.54 68.60 2.03 46.87 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 O -0.37 -18.26 7.95 -148.98 -1.18 -19.45 16 22 C -0.12 -4.62 4.03 30.59 0.12 -4.50 16 23 C -0.13 -5.03 4.83 30.60 0.15 -4.88 16 24 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 26 H 0.06 1.78 6.30 -2.38 -0.02 1.76 16 27 H 0.06 1.79 6.24 -2.38 -0.01 1.77 16 28 H 0.07 1.73 8.12 -2.39 -0.02 1.71 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 2.07 6.34 -2.39 -0.02 2.06 16 32 H 0.04 2.04 7.69 -2.39 -0.02 2.02 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.06 1.96 6.62 -2.39 -0.02 1.95 16 39 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.05 1.92 4.98 -2.39 -0.01 1.91 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.04 1.62 6.40 -2.39 -0.02 1.60 16 45 H 0.09 4.63 6.07 -2.39 -0.01 4.61 16 Total: -1.00 -62.86 325.63 1.73 -61.12 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.94 Total: 19.96 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 4.22 Total: -35.58 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -4.27 Total: -72.93 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -1.18 Total: -19.45 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -62.86 1.73 -61.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715292193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.613 kcal (2) G-P(sol) polarization free energy of solvation -62.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds