Wall clock time and date at job start Mon Mar 30 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.46974 * 2 1 4 4 C 1.46899 * 111.00237 * 61.09792 * 3 2 1 5 5 C 1.50702 * 109.47169 * 66.04106 * 4 3 2 6 6 H 1.08005 * 119.99874 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00289 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99632 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00040 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47376 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47063 * 120.00548 * 9 7 5 12 12 H 1.48502 * 109.47334 * 240.00290 * 9 7 5 13 13 C 1.46902 * 111.00176 * 297.14309 * 3 2 1 14 14 C 1.52998 * 109.46823 * 288.36294 * 13 3 2 15 15 H 1.08997 * 109.43441 * 55.69767 * 14 13 3 16 16 C 1.53076 * 109.43047 * 175.60054 * 14 13 3 17 17 C 1.53351 * 109.07895 * 179.47885 * 16 14 13 18 18 C 1.52844 * 108.74767 * 305.14931 * 17 16 14 19 19 C 1.53348 * 113.54276 * 282.25968 * 18 17 16 20 20 C 1.53854 * 86.95635 * 220.08524 * 19 18 17 21 21 C 1.53328 * 113.59951 * 184.27943 * 18 17 16 22 22 C 1.52761 * 112.68418 * 53.21399 * 18 17 16 23 23 O 1.42867 * 109.43737 * 295.82523 * 14 13 3 24 24 H 1.09000 * 109.47355 * 61.68035 * 1 2 3 25 25 H 1.09004 * 109.47354 * 181.68674 * 1 2 3 26 26 H 1.09005 * 109.47161 * 301.68577 * 1 2 3 27 27 H 1.09003 * 109.46843 * 240.00234 * 2 1 3 28 28 H 1.08993 * 109.46883 * 120.00433 * 2 1 3 29 29 H 1.08997 * 109.47474 * 186.04154 * 4 3 2 30 30 H 1.08998 * 109.47243 * 306.04676 * 4 3 2 31 31 H 0.97002 * 119.99730 * 179.97438 * 8 7 5 32 32 H 1.08992 * 109.47045 * 48.36226 * 13 3 2 33 33 H 1.09004 * 109.46679 * 168.36714 * 13 3 2 34 34 H 1.09000 * 109.54051 * 299.36040 * 16 14 13 35 35 H 1.09004 * 109.53620 * 59.60118 * 16 14 13 36 36 H 1.09008 * 109.59036 * 64.93007 * 17 16 14 37 37 H 1.09002 * 109.59447 * 185.21872 * 17 16 14 38 38 H 1.08999 * 113.64040 * 334.60590 * 19 18 17 39 39 H 1.09005 * 113.63610 * 105.57075 * 19 18 17 40 40 H 1.09004 * 113.60600 * 270.54269 * 20 19 18 41 41 H 1.08998 * 113.60373 * 139.67960 * 20 19 18 42 42 H 1.09003 * 113.63679 * 254.38531 * 21 18 17 43 43 H 1.09007 * 113.63096 * 25.34288 * 21 18 17 44 44 H 1.08996 * 109.52595 * 66.27628 * 22 18 17 45 45 H 1.09007 * 109.52327 * 186.40932 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5702 2.1023 1.2006 5 6 2.2145 1.4942 2.4197 6 1 2.8905 0.6587 2.3132 7 6 1.9417 2.0051 3.6710 8 7 1.1188 3.0228 3.8005 9 14 2.7408 1.2518 5.1820 10 1 3.6187 0.1275 4.7692 11 1 3.5517 2.2824 5.8789 12 1 1.6877 0.7470 6.0993 13 6 1.6052 2.0899 -1.2204 14 6 2.3986 1.5533 -2.4135 15 1 2.2667 0.4734 -2.4806 16 6 1.8900 2.2093 -3.6997 17 6 2.6989 1.6758 -4.8883 18 6 4.1849 1.9042 -4.6133 19 6 4.6354 3.3515 -4.8456 20 6 5.9152 2.7667 -5.4678 21 6 5.0939 1.5040 -5.7814 22 6 4.6295 1.3338 -3.2677 23 8 3.7843 1.8521 -2.2362 24 1 -0.3634 0.4875 -0.9047 25 1 -0.3634 -1.0272 0.0302 26 1 -0.3634 0.5398 0.8745 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8547 3.1518 1.1247 30 1 0.4863 2.0248 1.2857 31 1 0.9266 3.3820 4.6809 32 1 0.5407 1.9283 -1.3896 33 1 1.7973 3.1568 -1.1066 34 1 0.8359 1.9694 -3.8391 35 1 2.0130 3.2902 -3.6309 36 1 2.5094 0.6092 -5.0100 37 1 2.4073 2.2046 -5.7957 38 1 4.0125 3.8944 -5.5565 39 1 4.8118 3.9075 -3.9247 40 1 6.7145 2.5992 -4.7457 41 1 6.2517 3.3004 -6.3565 42 1 5.6388 0.5752 -5.6128 43 1 4.5979 1.5352 -6.7516 44 1 4.5530 0.2467 -3.2897 45 1 5.6625 1.6224 -3.0731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716348349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:39 Heat of formation + Delta-G solvation = -31.848334 kcal Electronic energy + Delta-G solvation = -21573.202148 eV Core-core repulsion = 18590.950515 eV Total energy + Delta-G solvation = -2982.251633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.46999 -37.83304 -36.27202 -32.97523 -32.44850 -30.22651 -29.03670 -27.05482 -25.79106 -25.37448 -24.07823 -23.29039 -21.99950 -20.69186 -19.10581 -18.43359 -16.22403 -16.15236 -15.85946 -15.39757 -14.90751 -14.72566 -14.36055 -14.12579 -13.81096 -13.59099 -12.94555 -12.70332 -12.58582 -12.51192 -12.35164 -11.82511 -11.56499 -11.48688 -11.33263 -11.09883 -11.01993 -10.87397 -10.76193 -10.55405 -10.49942 -10.34864 -10.07939 -9.97502 -9.91727 -9.52071 -9.11901 -8.99598 -8.35933 -7.02430 -5.95233 -3.95009 3.35606 3.42922 3.48347 4.03200 4.46422 4.48042 4.51210 4.59127 4.75488 4.85325 5.04608 5.18488 5.30376 5.32054 5.40783 5.54350 5.56227 5.58015 5.65642 5.69647 5.77559 5.80581 5.83284 5.86278 5.93582 5.96662 6.03179 6.05712 6.12704 6.23220 6.27836 6.32637 6.36431 6.46896 6.56431 6.74970 6.95722 7.41491 7.50058 7.66278 7.90347 8.20943 8.33355 8.66891 9.13060 9.68495 11.15784 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028088 B = 0.004303 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.644794 B = 6504.850694 C = 6919.090486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 N -0.525 5.525 4 C 0.189 3.811 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.057 3.943 14 C 0.100 3.900 15 H 0.052 0.948 16 C -0.149 4.149 17 C -0.102 4.102 18 C -0.117 4.117 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.131 4.131 22 C 0.084 3.916 23 O -0.349 6.349 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.027 0.973 30 H -0.003 1.003 31 H 0.259 0.741 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -2.947 -19.365 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.069 4.069 3 N -0.248 5.248 4 C 0.064 3.936 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.071 4.071 14 C 0.042 3.958 15 H 0.070 0.930 16 C -0.188 4.188 17 C -0.140 4.140 18 C -0.117 4.117 19 C -0.164 4.164 20 C -0.180 4.180 21 C -0.168 4.168 22 C 0.007 3.993 23 O -0.267 6.267 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.015 0.985 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.335 -2.729 -19.039 19.716 hybrid contribution -0.688 -0.419 0.564 0.984 sum 3.646 -3.148 -18.475 19.093 Atomic orbital electron populations 1.22412 0.99686 1.00954 1.01863 1.21990 0.91801 0.91970 1.01100 1.62253 1.59079 1.01473 1.01982 1.19789 0.94052 0.93905 0.85830 1.21208 1.26222 1.16024 0.90341 0.91916 1.24973 0.95482 0.95203 0.99046 1.69971 1.36046 1.24754 1.23332 0.86482 0.79131 0.79190 0.82858 1.19692 1.21097 1.21250 1.22091 0.95267 0.99332 0.90459 1.22104 0.82264 0.97857 0.93613 0.93009 1.22210 0.99564 1.01706 0.95282 1.21499 0.93669 1.00847 0.97939 1.22258 0.95311 0.97708 0.96424 1.22842 0.96742 0.95646 1.01123 1.22865 0.97097 0.97347 1.00709 1.22867 0.97871 0.98103 0.97959 1.22245 0.94836 0.96826 0.85389 1.88168 1.16451 1.77116 1.44945 0.93864 0.93517 0.91145 0.93337 0.90185 0.95448 0.98507 0.93135 0.94046 0.90918 0.91342 0.91030 0.92087 0.91823 0.90485 0.90788 0.90134 0.91775 0.91544 0.90230 0.93549 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 9.28 37.16 0.34 -3.10 16 2 C 0.06 1.19 5.73 -3.82 -0.02 1.16 16 3 N -0.52 -11.62 4.60 -236.08 -1.08 -12.71 16 4 C 0.19 5.00 4.49 -4.98 -0.02 4.98 16 5 C -0.50 -14.27 8.50 -34.44 -0.29 -14.56 16 6 H 0.06 1.80 7.11 -52.48 -0.37 1.42 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.07 4.50 -3.82 -0.02 1.05 16 14 C 0.10 1.57 2.62 -26.69 -0.07 1.50 16 15 H 0.05 0.81 6.54 -51.93 -0.34 0.47 16 16 C -0.15 -1.88 5.36 -26.51 -0.14 -2.02 16 17 C -0.10 -1.10 5.20 -26.63 -0.14 -1.23 16 18 C -0.12 -1.27 0.86 -154.36 -0.13 -1.40 16 19 C -0.13 -1.33 7.12 -26.11 -0.19 -1.52 16 20 C -0.14 -1.28 7.73 -25.84 -0.20 -1.48 16 21 C -0.13 -1.17 7.23 -26.12 -0.19 -1.36 16 22 C 0.08 1.11 5.93 37.03 0.22 1.33 16 23 O -0.35 -6.00 10.35 -35.23 -0.36 -6.37 16 24 H 0.04 0.71 6.32 -51.93 -0.33 0.38 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.48 6.21 -51.93 -0.32 1.16 16 27 H 0.05 0.85 6.51 -51.93 -0.34 0.52 16 28 H 0.08 1.73 6.83 -51.93 -0.35 1.37 16 29 H 0.03 0.79 7.86 -51.93 -0.41 0.38 16 30 H 0.00 -0.07 6.00 -51.93 -0.31 -0.39 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.04 0.73 5.92 -51.93 -0.31 0.42 16 33 H 0.07 1.43 7.82 -51.93 -0.41 1.02 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 36 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 38 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 39 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.08 0.72 7.64 -51.93 -0.40 0.32 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.08 0.65 8.10 -51.92 -0.42 0.23 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.12 7.34 -51.92 -0.38 0.73 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -30.38 338.68 -9.61 -39.99 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -8.03 Total: -1.44 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.94 Total: -15.21 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.35 Total: -39.11 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.36 Total: -6.37 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.38 -9.61 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716348349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.137 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds