Wall clock time and date at job start Mon Mar 30 2020 06:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.46974 * 2 1 4 4 C 1.46899 * 111.00237 * 61.09792 * 3 2 1 5 5 C 1.50702 * 109.47169 * 66.04106 * 4 3 2 6 6 H 1.08005 * 119.99874 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00289 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99632 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00040 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47376 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47063 * 120.00548 * 9 7 5 12 12 H 1.48502 * 109.47334 * 240.00290 * 9 7 5 13 13 C 1.46902 * 111.00176 * 297.14309 * 3 2 1 14 14 C 1.52998 * 109.46823 * 288.36294 * 13 3 2 15 15 H 1.08997 * 109.43441 * 55.69767 * 14 13 3 16 16 C 1.53076 * 109.43047 * 175.60054 * 14 13 3 17 17 C 1.53351 * 109.07895 * 179.47885 * 16 14 13 18 18 C 1.52844 * 108.74767 * 305.14931 * 17 16 14 19 19 C 1.53348 * 113.54276 * 282.25968 * 18 17 16 20 20 C 1.53854 * 86.95635 * 220.08524 * 19 18 17 21 21 C 1.53328 * 113.59951 * 184.27943 * 18 17 16 22 22 C 1.52761 * 112.68418 * 53.21399 * 18 17 16 23 23 O 1.42867 * 109.43737 * 295.82523 * 14 13 3 24 24 H 1.09000 * 109.47355 * 61.68035 * 1 2 3 25 25 H 1.09004 * 109.47354 * 181.68674 * 1 2 3 26 26 H 1.09005 * 109.47161 * 301.68577 * 1 2 3 27 27 H 1.09003 * 109.46843 * 240.00234 * 2 1 3 28 28 H 1.08993 * 109.46883 * 120.00433 * 2 1 3 29 29 H 1.08997 * 109.47474 * 186.04154 * 4 3 2 30 30 H 1.08998 * 109.47243 * 306.04676 * 4 3 2 31 31 H 0.97002 * 119.99730 * 179.97438 * 8 7 5 32 32 H 1.08992 * 109.47045 * 48.36226 * 13 3 2 33 33 H 1.09004 * 109.46679 * 168.36714 * 13 3 2 34 34 H 1.09000 * 109.54051 * 299.36040 * 16 14 13 35 35 H 1.09004 * 109.53620 * 59.60118 * 16 14 13 36 36 H 1.09008 * 109.59036 * 64.93007 * 17 16 14 37 37 H 1.09002 * 109.59447 * 185.21872 * 17 16 14 38 38 H 1.08999 * 113.64040 * 334.60590 * 19 18 17 39 39 H 1.09005 * 113.63610 * 105.57075 * 19 18 17 40 40 H 1.09004 * 113.60600 * 270.54269 * 20 19 18 41 41 H 1.08998 * 113.60373 * 139.67960 * 20 19 18 42 42 H 1.09003 * 113.63679 * 254.38531 * 21 18 17 43 43 H 1.09007 * 113.63096 * 25.34288 * 21 18 17 44 44 H 1.08996 * 109.52595 * 66.27628 * 22 18 17 45 45 H 1.09007 * 109.52327 * 186.40932 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5702 2.1023 1.2006 5 6 2.2145 1.4942 2.4197 6 1 2.8905 0.6587 2.3132 7 6 1.9417 2.0051 3.6710 8 7 1.1188 3.0228 3.8005 9 14 2.7408 1.2518 5.1820 10 1 3.6187 0.1275 4.7692 11 1 3.5517 2.2824 5.8789 12 1 1.6877 0.7470 6.0993 13 6 1.6052 2.0899 -1.2204 14 6 2.3986 1.5533 -2.4135 15 1 2.2667 0.4734 -2.4806 16 6 1.8900 2.2093 -3.6997 17 6 2.6989 1.6758 -4.8883 18 6 4.1849 1.9042 -4.6133 19 6 4.6354 3.3515 -4.8456 20 6 5.9152 2.7667 -5.4678 21 6 5.0939 1.5040 -5.7814 22 6 4.6295 1.3338 -3.2677 23 8 3.7843 1.8521 -2.2362 24 1 -0.3634 0.4875 -0.9047 25 1 -0.3634 -1.0272 0.0302 26 1 -0.3634 0.5398 0.8745 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8547 3.1518 1.1247 30 1 0.4863 2.0248 1.2857 31 1 0.9266 3.3820 4.6809 32 1 0.5407 1.9283 -1.3896 33 1 1.7973 3.1568 -1.1066 34 1 0.8359 1.9694 -3.8391 35 1 2.0130 3.2902 -3.6309 36 1 2.5094 0.6092 -5.0100 37 1 2.4073 2.2046 -5.7957 38 1 4.0125 3.8944 -5.5565 39 1 4.8118 3.9075 -3.9247 40 1 6.7145 2.5992 -4.7457 41 1 6.2517 3.3004 -6.3565 42 1 5.6388 0.5752 -5.6128 43 1 4.5979 1.5352 -6.7516 44 1 4.5530 0.2467 -3.2897 45 1 5.6625 1.6224 -3.0731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716348349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:38 Heat of formation + Delta-G solvation = -50.386331 kcal Electronic energy + Delta-G solvation = -21574.006016 eV Core-core repulsion = 18590.950515 eV Total energy + Delta-G solvation = -2983.055500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42055 -39.25341 -37.62477 -34.77159 -33.90622 -31.50510 -30.72920 -28.63109 -26.88922 -26.48145 -25.22489 -25.05835 -23.36366 -21.71088 -20.76770 -19.36633 -18.36236 -17.41505 -16.97253 -16.59338 -16.43794 -16.23090 -15.90731 -15.43308 -14.86468 -14.66803 -14.48795 -14.38838 -13.75339 -13.60007 -13.41376 -13.20898 -13.12137 -12.84834 -12.81832 -12.60022 -12.51484 -12.42655 -12.17535 -11.97783 -11.89009 -11.71374 -11.52592 -11.27162 -11.13676 -10.78675 -10.76940 -10.58707 -10.16966 -8.81542 -8.17507 -6.26403 1.39930 1.41193 1.54682 2.41699 2.91536 3.14616 3.31906 3.65145 3.69626 3.76316 4.00430 4.01915 4.10635 4.15677 4.28468 4.32657 4.42067 4.51648 4.56548 4.59970 4.70315 4.73384 4.75591 4.83086 4.89952 4.91354 4.94746 5.01493 5.02042 5.07747 5.12688 5.15703 5.22406 5.26953 5.36176 5.40326 5.50706 5.51927 5.59599 5.69778 6.10709 6.42914 6.50868 6.75242 6.90439 7.42623 8.93560 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028088 B = 0.004303 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.644794 B = 6504.850694 C = 6919.090486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 N -0.538 5.538 4 C 0.206 3.794 5 C -0.516 4.516 6 H 0.058 0.942 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.058 3.942 14 C 0.107 3.893 15 H 0.057 0.943 16 C -0.144 4.144 17 C -0.098 4.098 18 C -0.120 4.120 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.119 4.119 22 C 0.079 3.921 23 O -0.386 6.386 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.057 0.943 29 H -0.009 1.009 30 H -0.021 1.021 31 H 0.263 0.737 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 -4.491 -21.240 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.067 4.067 3 N -0.261 5.261 4 C 0.080 3.920 5 C -0.554 4.554 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.202 1.202 13 C -0.071 4.071 14 C 0.049 3.951 15 H 0.075 0.925 16 C -0.182 4.182 17 C -0.135 4.135 18 C -0.120 4.120 19 C -0.168 4.168 20 C -0.177 4.177 21 C -0.156 4.156 22 C 0.003 3.997 23 O -0.305 6.305 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.009 0.991 30 H -0.003 1.003 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.724 -4.286 -20.942 21.891 hybrid contribution -0.796 0.088 1.123 1.379 sum 3.928 -4.198 -19.819 20.636 Atomic orbital electron populations 1.22284 0.98240 1.02353 1.00967 1.22003 0.93011 0.90365 1.01357 1.62145 1.59741 1.02564 1.01673 1.19402 0.92677 0.92287 0.87639 1.21478 1.26340 1.16063 0.91551 0.92363 1.25876 0.95912 0.95540 1.02335 1.70095 1.37243 1.26012 1.24326 0.85372 0.78325 0.78468 0.78677 1.18893 1.20555 1.20228 1.22160 0.96709 0.97969 0.90228 1.22012 0.81647 0.98055 0.93398 0.92524 1.22153 1.00723 1.00895 0.94430 1.21510 0.92876 1.01568 0.97544 1.22221 0.96040 0.97881 0.95901 1.22875 0.98099 0.95406 1.00424 1.22855 0.96366 0.97450 1.00987 1.22835 0.97035 0.98139 0.97576 1.22405 0.94306 0.97157 0.85860 1.88106 1.17396 1.77877 1.47156 0.92085 0.90739 0.94777 0.90431 0.92454 0.99086 1.00333 0.92817 0.92773 0.93112 0.89821 0.91993 0.91149 0.89889 0.89439 0.93327 0.90535 0.90390 0.90941 0.88617 0.93003 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.37 9.28 71.98 0.67 -5.71 16 2 C 0.06 2.38 5.73 86.30 0.49 2.88 16 3 N -0.54 -24.45 4.60 -900.81 -4.14 -28.59 16 4 C 0.21 11.44 4.49 85.56 0.38 11.83 16 5 C -0.52 -30.40 8.50 25.60 0.22 -30.19 16 6 H 0.06 3.41 7.11 -2.91 -0.02 3.39 16 7 C 0.00 0.05 5.46 84.66 0.46 0.51 16 8 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 9 Si 0.97 45.75 29.54 68.60 2.03 47.78 16 10 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 C 0.06 2.18 4.50 86.30 0.39 2.57 16 14 C 0.11 3.28 2.62 30.62 0.08 3.36 16 15 H 0.06 1.67 6.54 -2.39 -0.02 1.65 16 16 C -0.14 -3.36 5.36 30.74 0.16 -3.20 16 17 C -0.10 -1.81 5.20 30.66 0.16 -1.65 16 18 C -0.12 -2.37 0.86 -52.09 -0.04 -2.42 16 19 C -0.13 -2.59 7.12 31.00 0.22 -2.36 16 20 C -0.14 -2.22 7.73 31.17 0.24 -1.97 16 21 C -0.12 -1.75 7.23 30.99 0.22 -1.53 16 22 C 0.08 2.02 5.93 71.90 0.43 2.45 16 23 O -0.39 -13.36 10.35 -148.98 -1.54 -14.90 16 24 H 0.06 1.92 6.32 -2.39 -0.02 1.90 16 25 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.03 1.45 6.21 -2.38 -0.01 1.43 16 27 H 0.08 2.59 6.51 -2.39 -0.02 2.58 16 28 H 0.06 2.49 6.83 -2.39 -0.02 2.48 16 29 H -0.01 -0.55 7.86 -2.39 -0.02 -0.57 16 30 H -0.02 -1.21 6.00 -2.39 -0.01 -1.23 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.05 1.89 5.92 -2.39 -0.01 1.87 16 33 H 0.05 2.11 7.82 -2.38 -0.02 2.09 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.57 8.12 -2.38 -0.02 1.55 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.08 1.26 8.04 -2.39 -0.02 1.24 16 38 H 0.09 1.53 8.02 -2.39 -0.02 1.51 16 39 H 0.05 1.20 8.09 -2.38 -0.02 1.18 16 40 H 0.08 1.27 7.64 -2.39 -0.02 1.25 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 43 H 0.10 1.16 8.10 -2.38 -0.02 1.14 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 2.22 7.34 -2.38 -0.02 2.20 16 Total: -1.00 -67.52 338.68 1.65 -65.87 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.94 Total: 12.85 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 4.09 Total: -25.45 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.85 Total: -86.15 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.54 Total: -14.90 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -67.52 1.65 -65.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716348349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.481 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds