Wall clock time and date at job start Mon Mar 30 2020 06:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47114 * 2 1 4 4 C 1.46898 * 110.99943 * 199.76775 * 3 2 1 5 5 C 1.50700 * 109.47139 * 66.04865 * 4 3 2 6 6 H 1.08004 * 119.99846 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00017 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00039 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00026 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47569 * 89.99901 * 9 7 5 11 11 H 1.48503 * 109.47041 * 210.00011 * 9 7 5 12 12 H 1.48500 * 109.46939 * 329.99525 * 9 7 5 13 13 C 1.46899 * 111.00109 * 75.81172 * 3 2 1 14 14 C 1.52996 * 109.47369 * 199.79672 * 13 3 2 15 15 H 1.09000 * 109.43275 * 300.37033 * 14 13 3 16 16 C 1.53081 * 109.43796 * 180.45934 * 14 13 3 17 17 C 1.53351 * 109.14783 * 180.48440 * 16 14 13 18 18 C 1.53025 * 108.64826 * 54.81750 * 17 16 14 19 19 C 1.53367 * 113.51787 * 77.77606 * 18 17 16 20 20 C 1.53854 * 86.94964 * 89.48884 * 19 18 17 21 21 C 1.53329 * 113.56315 * 175.72527 * 18 17 16 22 22 C 1.52752 * 112.72749 * 306.81940 * 18 17 16 23 23 O 1.42865 * 109.43576 * 60.22425 * 14 13 3 24 24 H 1.09001 * 109.47818 * 294.84901 * 1 2 3 25 25 H 1.09004 * 109.47284 * 54.85256 * 1 2 3 26 26 H 1.09002 * 109.47385 * 174.85350 * 1 2 3 27 27 H 1.08996 * 109.47459 * 239.99735 * 2 1 3 28 28 H 1.09004 * 109.46598 * 119.99744 * 2 1 3 29 29 H 1.09002 * 109.46813 * 186.04250 * 4 3 2 30 30 H 1.08994 * 109.47133 * 306.04168 * 4 3 2 31 31 H 0.97001 * 120.00025 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46942 * 79.79747 * 13 3 2 33 33 H 1.09003 * 109.47437 * 319.79761 * 13 3 2 34 34 H 1.09005 * 109.53183 * 300.40751 * 16 14 13 35 35 H 1.09001 * 109.53175 * 60.56364 * 16 14 13 36 36 H 1.08996 * 109.58677 * 174.66641 * 17 16 14 37 37 H 1.08993 * 109.59363 * 295.11331 * 17 16 14 38 38 H 1.08997 * 113.63373 * 204.00509 * 19 18 17 39 39 H 1.09001 * 113.63543 * 334.97370 * 19 18 17 40 40 H 1.09003 * 113.60050 * 270.53503 * 20 19 18 41 41 H 1.08999 * 113.59957 * 139.68098 * 20 19 18 42 42 H 1.09001 * 113.63732 * 25.07550 * 21 18 17 43 43 H 1.09007 * 113.63092 * 155.94901 * 21 18 17 44 44 H 1.09003 * 109.52048 * 293.74495 * 22 18 17 45 45 H 1.08992 * 109.58471 * 173.57304 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4119 1.4511 -0.4638 5 6 3.4779 1.0476 -1.9143 6 1 2.5758 0.7694 -2.4390 7 6 4.6898 1.0335 -2.5715 8 7 4.7474 0.6809 -3.8372 9 14 6.2499 1.5154 -1.6642 10 1 6.8542 0.3093 -1.0435 11 1 7.2140 2.1151 -2.6214 12 1 5.9219 2.5049 -0.6067 13 6 1.8782 1.9934 1.3296 14 6 1.9173 3.5173 1.1999 15 1 2.8654 3.8192 0.7549 16 6 1.7814 4.1503 2.5871 17 6 1.8092 5.6772 2.4482 18 6 0.7230 6.0981 1.4559 19 6 -0.6889 6.0915 2.0548 20 6 -0.4331 7.5524 2.4642 21 6 0.5818 7.6179 1.3098 22 6 0.8246 5.3610 0.1219 23 8 0.8421 3.9512 0.3652 24 1 -0.3635 0.4318 0.9325 25 1 -0.3634 0.5916 -0.8403 26 1 -0.3634 -1.0235 -0.0922 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.7838 2.4697 -0.3529 30 1 4.0253 0.7736 0.1301 31 1 5.6001 0.6713 -4.2997 32 1 2.6960 1.6621 1.9696 33 1 0.9276 1.6904 1.7686 34 1 0.8376 3.8423 3.0373 35 1 2.6091 3.8265 3.2181 36 1 1.6183 6.1359 3.4183 37 1 2.7844 5.9928 2.0777 38 1 -1.4782 5.9777 1.3118 39 1 -0.8014 5.4138 2.9011 40 1 0.0200 7.6563 3.4502 41 1 -1.2966 8.2025 2.3237 42 1 1.4903 8.1670 1.5573 43 1 0.1457 7.9269 0.3598 44 1 1.7427 5.6542 -0.3873 45 1 -0.0338 5.6126 -0.5009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716348350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:42 Heat of formation + Delta-G solvation = -31.554220 kcal Electronic energy + Delta-G solvation = -21745.907934 eV Core-core repulsion = 18763.669055 eV Total energy + Delta-G solvation = -2982.238879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42503 -37.73110 -36.18762 -32.81375 -32.44532 -30.56816 -29.53557 -27.51019 -25.83751 -25.62113 -23.58272 -22.32051 -22.07875 -20.82528 -19.56282 -18.22448 -16.82734 -16.21220 -15.68616 -15.55741 -14.85214 -14.72595 -14.21095 -13.89774 -13.85721 -13.35786 -13.09931 -12.89381 -12.58487 -12.50082 -12.38660 -12.17033 -11.82214 -11.43416 -11.29241 -11.13251 -11.09476 -10.95517 -10.78047 -10.68274 -10.44415 -10.30648 -10.16667 -9.92754 -9.80029 -9.68857 -9.15083 -8.87277 -8.53049 -7.23585 -6.00660 -3.96606 3.29272 3.36953 3.38611 4.07695 4.44997 4.49941 4.53427 4.60319 4.69717 4.78456 5.05713 5.21161 5.25295 5.31529 5.34179 5.52861 5.59468 5.64746 5.69651 5.72990 5.76583 5.80629 5.87219 5.89707 5.93467 5.97487 5.99362 6.03403 6.12188 6.17570 6.23211 6.31430 6.39255 6.44195 6.52733 6.76932 6.80643 6.99498 7.06011 7.66733 7.72577 8.04405 8.17129 8.73707 9.10079 9.61709 11.12714 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020243 B = 0.005413 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.869691 B = 5171.829572 C = 5807.931501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 N -0.516 5.516 4 C 0.161 3.839 5 C -0.503 4.503 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.061 3.939 14 C 0.100 3.900 15 H 0.057 0.943 16 C -0.148 4.148 17 C -0.094 4.094 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.142 4.142 21 C -0.131 4.131 22 C 0.076 3.924 23 O -0.349 6.349 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.015 0.985 29 H 0.026 0.974 30 H -0.020 1.020 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 10.726 14.316 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.072 4.072 3 N -0.240 5.240 4 C 0.034 3.966 5 C -0.541 4.541 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.068 4.068 14 C 0.041 3.959 15 H 0.075 0.925 16 C -0.187 4.187 17 C -0.131 4.131 18 C -0.117 4.117 19 C -0.159 4.159 20 C -0.179 4.179 21 C -0.168 4.168 22 C -0.001 4.001 23 O -0.267 6.267 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.044 0.956 30 H -0.002 1.002 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.716 10.825 13.749 19.549 hybrid contribution 1.726 0.064 1.073 2.033 sum -6.990 10.889 14.822 19.676 Atomic orbital electron populations 1.21745 0.96299 1.00105 1.01597 1.21998 0.94653 0.89721 1.00849 1.61873 1.23291 1.17120 1.21680 1.20222 0.84006 0.95739 0.96601 1.21053 0.95340 1.44288 0.93438 0.90021 1.24892 0.98613 0.95118 0.94740 1.69899 1.25689 1.48924 1.09580 0.86898 0.83901 0.79187 0.79946 1.20399 1.21207 1.19347 1.22081 1.00322 0.92459 0.91961 1.22042 0.90695 0.94334 0.88825 0.92521 1.22211 1.02526 0.95389 0.98548 1.21356 0.97751 0.95759 0.98252 1.22271 0.96238 0.95773 0.97463 1.22829 0.96277 0.96150 1.00645 1.22853 0.99197 0.97431 0.98458 1.22854 0.99496 0.95430 0.99042 1.22460 1.01585 0.82153 0.93936 1.88096 1.49073 1.20603 1.68889 0.93980 0.91834 0.93571 0.89219 0.96711 0.95582 1.00232 0.92771 0.94634 0.91135 0.91208 0.91277 0.91686 0.91684 0.90032 0.91601 0.90524 0.91772 0.91571 0.89986 0.93473 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.96 37.16 0.37 -1.99 16 2 C 0.06 1.11 5.51 -3.83 -0.02 1.09 16 3 N -0.52 -11.15 4.22 -236.08 -1.00 -12.14 16 4 C 0.16 3.98 3.62 -4.98 -0.02 3.96 16 5 C -0.50 -14.51 8.79 -34.44 -0.30 -14.81 16 6 H 0.08 2.58 7.56 -52.48 -0.40 2.18 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.06 1.08 4.50 -3.83 -0.02 1.06 16 14 C 0.10 1.66 2.64 -26.69 -0.07 1.59 16 15 H 0.06 1.06 6.78 -51.93 -0.35 0.71 16 16 C -0.15 -1.90 5.35 -26.51 -0.14 -2.05 16 17 C -0.09 -1.07 5.12 -26.54 -0.14 -1.21 16 18 C -0.12 -1.35 0.86 -154.26 -0.13 -1.49 16 19 C -0.12 -1.28 7.13 -26.10 -0.19 -1.46 16 20 C -0.14 -1.26 7.73 -25.84 -0.20 -1.46 16 21 C -0.13 -1.27 7.23 -26.12 -0.19 -1.46 16 22 C 0.08 1.09 6.02 37.03 0.22 1.32 16 23 O -0.35 -6.19 10.28 -35.23 -0.36 -6.55 16 24 H 0.04 0.65 6.90 -51.93 -0.36 0.29 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 2.02 6.58 -51.93 -0.34 1.67 16 28 H 0.01 0.27 8.00 -51.93 -0.42 -0.14 16 29 H 0.03 0.66 5.68 -51.93 -0.30 0.36 16 30 H -0.02 -0.49 7.55 -51.93 -0.39 -0.88 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.04 0.61 8.00 -51.93 -0.42 0.19 16 33 H 0.07 1.16 6.56 -51.93 -0.34 0.82 16 34 H 0.07 0.87 7.66 -51.93 -0.40 0.47 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.65 7.35 -51.93 -0.38 0.27 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.86 8.03 -51.93 -0.42 0.45 16 39 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 40 H 0.08 0.64 7.64 -51.93 -0.40 0.25 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.08 0.76 8.10 -51.92 -0.42 0.34 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 LS Contribution 339.91 15.07 5.12 5.12 Total: -1.00 -30.88 339.91 -9.31 -40.19 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -8.26 Total: -1.54 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.92 Total: -15.04 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.22 Total: -39.28 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.36 Total: -6.55 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.88 -9.31 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716348350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.633 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds