Wall clock time and date at job start Mon Mar 30 2020 06:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47114 * 2 1 4 4 C 1.46898 * 110.99943 * 199.76775 * 3 2 1 5 5 C 1.50700 * 109.47139 * 66.04865 * 4 3 2 6 6 H 1.08004 * 119.99846 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00017 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00039 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00026 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47569 * 89.99901 * 9 7 5 11 11 H 1.48503 * 109.47041 * 210.00011 * 9 7 5 12 12 H 1.48500 * 109.46939 * 329.99525 * 9 7 5 13 13 C 1.46899 * 111.00109 * 75.81172 * 3 2 1 14 14 C 1.52996 * 109.47369 * 199.79672 * 13 3 2 15 15 H 1.09000 * 109.43275 * 300.37033 * 14 13 3 16 16 C 1.53081 * 109.43796 * 180.45934 * 14 13 3 17 17 C 1.53351 * 109.14783 * 180.48440 * 16 14 13 18 18 C 1.53025 * 108.64826 * 54.81750 * 17 16 14 19 19 C 1.53367 * 113.51787 * 77.77606 * 18 17 16 20 20 C 1.53854 * 86.94964 * 89.48884 * 19 18 17 21 21 C 1.53329 * 113.56315 * 175.72527 * 18 17 16 22 22 C 1.52752 * 112.72749 * 306.81940 * 18 17 16 23 23 O 1.42865 * 109.43576 * 60.22425 * 14 13 3 24 24 H 1.09001 * 109.47818 * 294.84901 * 1 2 3 25 25 H 1.09004 * 109.47284 * 54.85256 * 1 2 3 26 26 H 1.09002 * 109.47385 * 174.85350 * 1 2 3 27 27 H 1.08996 * 109.47459 * 239.99735 * 2 1 3 28 28 H 1.09004 * 109.46598 * 119.99744 * 2 1 3 29 29 H 1.09002 * 109.46813 * 186.04250 * 4 3 2 30 30 H 1.08994 * 109.47133 * 306.04168 * 4 3 2 31 31 H 0.97001 * 120.00025 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46942 * 79.79747 * 13 3 2 33 33 H 1.09003 * 109.47437 * 319.79761 * 13 3 2 34 34 H 1.09005 * 109.53183 * 300.40751 * 16 14 13 35 35 H 1.09001 * 109.53175 * 60.56364 * 16 14 13 36 36 H 1.08996 * 109.58677 * 174.66641 * 17 16 14 37 37 H 1.08993 * 109.59363 * 295.11331 * 17 16 14 38 38 H 1.08997 * 113.63373 * 204.00509 * 19 18 17 39 39 H 1.09001 * 113.63543 * 334.97370 * 19 18 17 40 40 H 1.09003 * 113.60050 * 270.53503 * 20 19 18 41 41 H 1.08999 * 113.59957 * 139.68098 * 20 19 18 42 42 H 1.09001 * 113.63732 * 25.07550 * 21 18 17 43 43 H 1.09007 * 113.63092 * 155.94901 * 21 18 17 44 44 H 1.09003 * 109.52048 * 293.74495 * 22 18 17 45 45 H 1.08992 * 109.58471 * 173.57304 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4119 1.4511 -0.4638 5 6 3.4779 1.0476 -1.9143 6 1 2.5758 0.7694 -2.4390 7 6 4.6898 1.0335 -2.5715 8 7 4.7474 0.6809 -3.8372 9 14 6.2499 1.5154 -1.6642 10 1 6.8542 0.3093 -1.0435 11 1 7.2140 2.1151 -2.6214 12 1 5.9219 2.5049 -0.6067 13 6 1.8782 1.9934 1.3296 14 6 1.9173 3.5173 1.1999 15 1 2.8654 3.8192 0.7549 16 6 1.7814 4.1503 2.5871 17 6 1.8092 5.6772 2.4482 18 6 0.7230 6.0981 1.4559 19 6 -0.6889 6.0915 2.0548 20 6 -0.4331 7.5524 2.4642 21 6 0.5818 7.6179 1.3098 22 6 0.8246 5.3610 0.1219 23 8 0.8421 3.9512 0.3652 24 1 -0.3635 0.4318 0.9325 25 1 -0.3634 0.5916 -0.8403 26 1 -0.3634 -1.0235 -0.0922 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.7838 2.4697 -0.3529 30 1 4.0253 0.7736 0.1301 31 1 5.6001 0.6713 -4.2997 32 1 2.6960 1.6621 1.9696 33 1 0.9276 1.6904 1.7686 34 1 0.8376 3.8423 3.0373 35 1 2.6091 3.8265 3.2181 36 1 1.6183 6.1359 3.4183 37 1 2.7844 5.9928 2.0777 38 1 -1.4782 5.9777 1.3118 39 1 -0.8014 5.4138 2.9011 40 1 0.0200 7.6563 3.4502 41 1 -1.2966 8.2025 2.3237 42 1 1.4903 8.1670 1.5573 43 1 0.1457 7.9269 0.3598 44 1 1.7427 5.6542 -0.3873 45 1 -0.0338 5.6126 -0.5009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716348350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:42 Heat of formation + Delta-G solvation = -50.888206 kcal Electronic energy + Delta-G solvation = -21746.746318 eV Core-core repulsion = 18763.669055 eV Total energy + Delta-G solvation = -2983.077263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40389 -39.09909 -37.57729 -34.73822 -33.85379 -31.97819 -31.06480 -29.02942 -27.14839 -26.54128 -24.72937 -23.99233 -23.41979 -21.90363 -21.23074 -19.20281 -18.95954 -17.45274 -16.82719 -16.57001 -16.40242 -16.27988 -15.75077 -15.39790 -14.93275 -14.81245 -14.55495 -14.35183 -14.03020 -13.81488 -13.51556 -13.36849 -13.18825 -12.86287 -12.66700 -12.58917 -12.44383 -12.14484 -12.00447 -11.93087 -11.87743 -11.75758 -11.66061 -11.31537 -11.24250 -11.01273 -10.84452 -10.76197 -10.02232 -8.91855 -8.28157 -6.30399 1.31123 1.33318 1.44006 2.33118 2.91271 3.03962 3.19766 3.67188 3.68861 3.72726 3.96064 4.02822 4.11261 4.16242 4.23914 4.33176 4.48976 4.52569 4.55633 4.59403 4.70254 4.73470 4.76601 4.82849 4.85196 4.88846 4.90162 4.93212 5.01902 5.05832 5.08371 5.09392 5.14428 5.19604 5.29451 5.37138 5.45671 5.49871 5.56673 5.61957 6.03544 6.45319 6.48533 6.73533 6.76510 7.32571 8.88863 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020243 B = 0.005413 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.869691 B = 5171.829572 C = 5807.931501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.055 3.945 3 N -0.536 5.536 4 C 0.174 3.826 5 C -0.511 4.511 6 H 0.035 0.965 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.252 1.252 13 C 0.060 3.940 14 C 0.099 3.901 15 H 0.029 0.971 16 C -0.139 4.139 17 C -0.092 4.092 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.130 4.130 21 C -0.129 4.129 22 C 0.070 3.930 23 O -0.377 6.377 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.023 0.977 30 H -0.016 1.016 31 H 0.266 0.734 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.030 0.970 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 12.051 17.530 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 N -0.260 5.260 4 C 0.047 3.953 5 C -0.549 4.549 6 H 0.053 0.947 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.769 3.231 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.176 1.176 13 C -0.068 4.068 14 C 0.040 3.960 15 H 0.047 0.953 16 C -0.177 4.177 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.160 4.160 20 C -0.167 4.167 21 C -0.166 4.166 22 C -0.007 4.007 23 O -0.296 6.296 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.001 0.999 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.048 0.952 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.716 12.155 16.982 22.630 hybrid contribution 1.614 -0.395 -0.025 1.662 sum -7.101 11.760 16.957 21.824 Atomic orbital electron populations 1.21638 0.93837 1.01413 1.01654 1.21993 0.96648 0.88850 0.99816 1.61801 1.21187 1.18338 1.24651 1.19927 0.86267 0.95129 0.93978 1.21251 0.93920 1.44167 0.95597 0.94654 1.25830 1.02588 0.94951 0.95555 1.70057 1.26935 1.50409 1.11565 0.85747 0.78850 0.79583 0.78966 1.19011 1.20571 1.17615 1.22210 1.01614 0.93013 0.89952 1.22047 0.89230 0.93880 0.90827 0.95290 1.22131 1.03561 0.96096 0.95932 1.21375 0.97404 0.94852 0.99291 1.22283 0.97254 0.96700 0.95822 1.22829 0.95180 0.97512 1.00458 1.22812 0.99214 0.96172 0.98480 1.22866 1.00190 0.93814 0.99747 1.22610 1.00915 0.81139 0.95998 1.88034 1.49339 1.22570 1.69664 0.91988 0.93991 0.91242 0.93029 0.94828 0.95881 0.99870 0.92482 0.93374 0.89400 0.90302 0.89843 0.89275 0.92238 0.90548 0.91502 0.89368 0.90655 0.90966 0.89872 0.95179 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.96 71.98 0.72 -3.50 16 2 C 0.05 2.19 5.51 86.30 0.48 2.67 16 3 N -0.54 -23.30 4.22 -900.82 -3.81 -27.10 16 4 C 0.17 8.71 3.62 85.56 0.31 9.02 16 5 C -0.51 -30.71 8.79 25.60 0.22 -30.48 16 6 H 0.04 2.38 7.56 -2.91 -0.02 2.36 16 7 C 0.01 0.46 5.47 84.65 0.46 0.92 16 8 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 9 Si 0.95 45.12 27.47 68.60 1.88 47.00 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 13 C 0.06 2.05 4.50 86.30 0.39 2.44 16 14 C 0.10 3.20 2.64 30.62 0.08 3.29 16 15 H 0.03 1.09 6.78 -2.39 -0.02 1.07 16 16 C -0.14 -3.22 5.35 30.74 0.16 -3.05 16 17 C -0.09 -1.87 5.12 30.72 0.16 -1.71 16 18 C -0.12 -2.57 0.86 -52.02 -0.04 -2.62 16 19 C -0.12 -2.28 7.13 31.01 0.22 -2.06 16 20 C -0.13 -1.89 7.73 31.17 0.24 -1.65 16 21 C -0.13 -2.21 7.23 30.99 0.22 -1.98 16 22 C 0.07 2.02 6.02 71.90 0.43 2.46 16 23 O -0.38 -13.41 10.28 -148.98 -1.53 -14.94 16 24 H 0.06 1.79 6.90 -2.39 -0.02 1.77 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 2.43 6.58 -2.39 -0.02 2.41 16 28 H 0.03 1.20 8.00 -2.38 -0.02 1.18 16 29 H 0.02 1.17 5.68 -2.39 -0.01 1.16 16 30 H -0.02 -0.79 7.55 -2.39 -0.02 -0.81 16 31 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.05 1.53 8.00 -2.39 -0.02 1.51 16 33 H 0.09 2.68 6.56 -2.39 -0.02 2.66 16 34 H 0.08 1.70 7.66 -2.38 -0.02 1.68 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.42 7.35 -2.39 -0.02 1.40 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.49 8.03 -2.39 -0.02 1.47 16 39 H 0.07 1.24 7.62 -2.39 -0.02 1.22 16 40 H 0.09 1.12 7.64 -2.39 -0.02 1.10 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 43 H 0.08 1.40 8.10 -2.38 -0.02 1.38 16 44 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 2.50 8.05 -2.39 -0.02 2.48 16 Total: -1.00 -69.32 339.91 1.77 -67.55 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.87 Total: 14.19 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.05 Total: -26.26 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -3.51 Total: -87.54 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -1.53 Total: -14.94 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -69.32 1.77 -67.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716348350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.663 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds