Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.47203 * 2 1 4 4 C 1.46900 * 110.99899 * 227.80177 * 3 2 1 5 5 C 1.53175 * 109.54121 * 76.61187 * 4 3 2 6 6 C 1.53096 * 109.21329 * 183.18183 * 5 4 3 7 7 O 1.42908 * 109.41253 * 57.57370 * 6 5 4 8 8 C 1.42905 * 114.09903 * 298.83933 * 7 6 5 9 9 C 1.53093 * 109.40960 * 61.16058 * 8 7 6 10 10 C 1.46897 * 110.99930 * 103.84766 * 3 2 1 11 11 H 1.09001 * 109.47459 * 328.51967 * 10 3 2 12 12 C 1.52998 * 109.47275 * 208.51909 * 10 3 2 13 13 C 1.52995 * 109.47373 * 300.00117 * 12 10 3 14 14 C 1.53007 * 109.47119 * 300.00152 * 13 12 10 15 15 C 1.52998 * 109.47122 * 59.99694 * 14 13 12 16 16 C 1.53000 * 109.47395 * 88.51862 * 10 3 2 17 17 C 1.50700 * 109.46905 * 300.00307 * 16 10 3 18 18 N 1.27940 * 120.00180 * 42.89837 * 17 16 10 19 19 Si 1.86803 * 119.99843 * 222.89682 * 17 16 10 20 20 H 1.48502 * 109.47084 * 0.02562 * 19 17 16 21 21 H 1.48498 * 109.47178 * 119.99916 * 19 17 16 22 22 H 1.48503 * 109.47051 * 240.00353 * 19 17 16 23 23 H 1.08997 * 109.46688 * 292.79688 * 1 2 3 24 24 H 1.09000 * 109.46960 * 52.79706 * 1 2 3 25 25 H 1.08999 * 109.46821 * 172.79643 * 1 2 3 26 26 H 1.09006 * 109.47070 * 239.99898 * 2 1 3 27 27 H 1.09003 * 109.46876 * 120.00389 * 2 1 3 28 28 H 1.09004 * 109.60895 * 196.82883 * 4 3 2 29 29 H 1.08998 * 109.52711 * 63.24818 * 5 4 3 30 30 H 1.08996 * 109.52283 * 303.11604 * 5 4 3 31 31 H 1.08998 * 109.48220 * 177.55861 * 6 5 4 32 32 H 1.08997 * 109.48179 * 297.58217 * 6 5 4 33 33 H 1.08995 * 109.47821 * 181.14253 * 8 7 6 34 34 H 1.08998 * 109.47920 * 301.18042 * 8 7 6 35 35 H 1.09008 * 109.52238 * 62.29836 * 9 8 7 36 36 H 1.08998 * 109.52154 * 182.41889 * 9 8 7 37 37 H 1.09002 * 109.46884 * 60.00141 * 12 10 3 38 38 H 1.08996 * 109.47278 * 179.97438 * 12 10 3 39 39 H 1.09005 * 109.47192 * 59.99764 * 13 12 10 40 40 H 1.08999 * 109.47490 * 179.97438 * 13 12 10 41 41 H 1.08998 * 109.47098 * 180.02562 * 14 13 12 42 42 H 1.08996 * 109.46687 * 299.99770 * 14 13 12 43 43 H 1.05374 * 85.56359 * 112.49868 * 28 4 3 44 44 H 1.08996 * 109.47187 * 180.02562 * 15 14 13 45 45 H 1.08996 * 109.47590 * 179.97438 * 16 10 3 46 46 H 0.97004 * 120.00200 * 142.52341 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.0637 1.5742 -1.0160 5 6 2.4188 1.6660 -2.4023 6 6 3.5173 1.7832 -3.4622 7 8 4.3946 0.6594 -3.3634 8 6 5.0634 0.5502 -2.1052 9 6 4.0270 0.3834 -0.9909 10 6 2.5047 1.7718 1.3316 11 1 1.9315 1.2448 2.0943 12 6 2.3345 3.2809 1.5177 13 6 3.1390 4.0208 0.4472 14 6 4.6189 3.6545 0.5772 15 6 4.7890 2.1454 0.3910 16 6 3.9845 1.4056 1.4617 17 6 4.1520 -0.0808 1.2784 18 7 3.5129 -0.6870 0.3505 19 14 5.2930 -1.0382 2.4058 20 1 5.9088 -0.1117 3.3895 21 1 4.5177 -2.0800 3.1259 22 1 6.3592 -1.6839 1.5986 23 1 -0.3632 0.3982 0.9474 24 1 -0.3633 0.6214 -0.8185 25 1 -0.3633 -1.0196 -0.1289 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.6141 2.4918 -0.8084 29 1 1.7745 2.5440 -2.4470 30 1 1.8270 0.7699 -2.5888 31 1 3.0650 1.8052 -4.4537 32 1 4.0824 2.7010 -3.3001 33 1 5.7248 -0.3161 -2.1192 34 1 5.6488 1.4519 -1.9252 35 1 3.4682 -0.5393 -1.1482 36 1 4.5327 0.3430 -0.0262 37 1 1.2803 3.5418 1.4250 38 1 2.6939 3.5679 2.5059 39 1 2.7792 3.7337 -0.5409 40 1 3.0175 5.0959 0.5795 41 1 5.1921 4.1819 -0.1852 42 1 4.9787 3.9415 1.5652 43 1 4.4292 1.8583 -0.5969 44 1 5.8432 1.8844 0.4841 45 1 4.3444 1.6931 2.4496 46 1 3.9366 -1.4102 -0.1377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716499058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = 303.821610 kcal Electronic energy + Delta-G solvation = -25066.567704 eV Core-core repulsion = 22085.216074 eV Total energy + Delta-G solvation = -2981.351631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.202 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.27986 -39.28153 -38.37431 -36.23135 -34.26867 -32.09563 -31.91376 -31.13611 -28.90767 -25.52654 -25.18656 -24.11744 -23.88642 -22.71843 -21.43411 -21.26920 -20.03222 -18.13583 -17.28648 -17.04997 -16.70205 -16.18386 -15.94030 -15.78152 -15.64500 -15.17822 -14.85393 -14.43164 -14.20375 -14.12808 -13.84924 -13.58235 -13.23723 -13.11642 -13.01173 -12.78592 -12.58563 -12.49773 -12.30401 -12.17805 -11.91381 -11.76717 -11.66715 -11.58605 -11.33782 -11.02976 -10.78551 -10.69756 -10.02673 -9.62029 -8.78663 -8.35540 0.41203 1.25288 1.46792 1.61701 1.95496 2.93274 3.06265 3.37574 3.65266 3.79282 3.80382 3.91328 4.01768 4.07586 4.19658 4.20896 4.31747 4.36296 4.40633 4.46636 4.47869 4.58093 4.59773 4.63728 4.68641 4.70167 4.74368 4.83026 4.87106 4.92242 4.98975 5.04449 5.12302 5.16514 5.19518 5.21928 5.25080 5.30013 5.32924 5.39967 5.40610 5.46483 5.54130 5.70192 6.25529 6.35008 6.42727 6.45955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.074 3.926 3 N -0.506 5.506 4 C 0.035 3.965 5 C -0.151 4.151 6 C 0.059 3.941 7 O -0.384 6.384 8 C 0.047 3.953 9 C -0.308 4.308 10 C 0.094 3.906 11 H 0.079 0.921 12 C -0.108 4.108 13 C -0.132 4.132 14 C -0.123 4.123 15 C -0.238 4.238 16 C -0.055 4.055 17 C -0.237 4.237 18 N -0.481 5.481 19 Si 0.962 3.038 20 H -0.244 1.244 21 H -0.257 1.257 22 H -0.256 1.256 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.158 0.842 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.154 0.846 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.182 0.818 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 0.697 0.511 1.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.054 4.054 3 N -0.227 5.227 4 C -0.072 4.072 5 C -0.189 4.189 6 C -0.019 4.019 7 O -0.302 6.302 8 C -0.031 4.031 9 C -0.348 4.348 10 C -0.015 4.015 11 H 0.097 0.903 12 C -0.146 4.146 13 C -0.169 4.169 14 C -0.161 4.161 15 C -0.274 4.274 16 C -0.076 4.076 17 C -0.466 4.466 18 N -0.112 5.112 19 Si 0.782 3.218 20 H -0.166 1.166 21 H -0.182 1.182 22 H -0.180 1.180 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.174 0.826 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.169 0.831 36 H 0.215 0.785 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.197 0.803 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.509 0.478 0.533 0.878 hybrid contribution 1.035 -0.666 0.462 1.315 sum 1.544 -0.188 0.995 1.846 Atomic orbital electron populations 1.22075 0.97587 1.00362 1.01634 1.22506 0.91949 0.88470 1.02475 1.62294 1.33410 1.23372 1.03650 1.23466 0.91825 0.99727 0.92172 1.22330 0.98560 1.03593 0.94426 1.22634 0.90821 0.88669 0.99745 1.87943 1.59862 1.47915 1.34517 1.23209 0.94333 1.01854 0.83704 1.27530 1.01263 1.00632 1.05377 1.21680 0.92756 0.95824 0.91243 0.90294 1.21538 1.00666 0.93975 0.98399 1.21745 0.94728 0.99884 1.00569 1.21591 0.96722 0.95546 1.02201 1.24741 1.00699 0.95322 1.06672 1.20714 0.97424 0.89192 1.00228 1.28641 1.13585 1.00831 1.03546 1.72055 1.24883 1.11793 1.02510 0.85011 0.77735 0.79233 0.79840 1.16628 1.18158 1.17987 0.93436 0.92794 0.93390 0.91807 0.90693 0.82643 0.90352 0.91168 0.88764 0.93295 0.89199 0.92782 0.83115 0.78500 0.91217 0.91900 0.90409 0.92079 0.91882 0.91917 0.80276 0.92213 0.89896 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.13 10.24 37.16 0.38 0.25 16 2 C 0.07 0.01 3.49 -3.82 -0.01 -0.01 16 3 N -0.51 0.09 4.01 -285.50 -1.14 -1.05 16 4 C 0.04 -0.03 0.58 -67.53 -0.04 -0.07 16 5 C -0.15 0.04 5.54 -26.59 -0.15 -0.11 16 6 C 0.06 -0.01 6.84 37.21 0.25 0.25 16 7 O -0.38 -0.60 10.77 -35.23 -0.38 -0.98 16 8 C 0.05 -0.04 6.56 37.21 0.24 0.21 16 9 C -0.31 0.47 1.72 -44.51 -0.08 0.39 16 10 C 0.09 -0.04 2.45 -67.72 -0.17 -0.20 16 11 H 0.08 0.02 7.61 -51.93 -0.39 -0.37 16 12 C -0.11 0.06 5.64 -26.73 -0.15 -0.09 16 13 C -0.13 0.12 5.57 -26.73 -0.15 -0.03 16 14 C -0.12 0.16 5.57 -26.73 -0.15 0.01 16 15 C -0.24 0.35 3.19 -26.73 -0.09 0.26 16 16 C -0.06 0.06 2.01 -91.77 -0.18 -0.12 16 17 C -0.24 0.36 2.84 -13.90 -0.04 0.32 16 18 N -0.48 0.93 3.10 -92.40 -0.29 0.64 16 19 Si 0.96 -0.88 29.61 -169.99 -5.03 -5.91 16 20 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 21 H -0.26 -0.21 7.11 56.52 0.40 0.19 16 22 H -0.26 0.10 7.11 56.52 0.40 0.50 16 23 H 0.05 0.06 8.14 -51.93 -0.42 -0.36 16 24 H 0.05 0.09 8.14 -51.93 -0.42 -0.34 16 25 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 26 H 0.06 0.00 4.68 -51.93 -0.24 -0.24 16 27 H 0.08 0.02 4.95 -66.58 -0.33 -0.31 16 28 H 0.16 -0.17 1.74 -69.55 -0.12 -0.29 16 29 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.07 0.06 7.20 -51.93 -0.37 -0.31 16 31 H 0.09 -0.06 8.14 -51.93 -0.42 -0.49 16 32 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 33 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 34 H 0.05 -0.07 7.07 -51.93 -0.37 -0.44 16 35 H 0.15 -0.23 3.54 -109.06 -0.39 -0.62 16 36 H 0.20 -0.40 1.31 -190.01 -0.25 -0.65 16 37 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 38 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 39 H 0.08 -0.03 5.51 -51.93 -0.29 -0.32 16 40 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 41 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 42 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 43 H 0.18 -0.29 0.47 -180.31 -0.09 -0.38 16 44 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 45 H 0.08 -0.10 7.60 -51.93 -0.39 -0.50 16 46 H 0.34 -1.16 6.96 -40.82 -0.28 -1.44 16 LS Contribution 295.53 15.07 4.45 4.45 Total: 0.00 -2.03 295.53 -10.52 -12.54 By element: Atomic # 1 Polarization: -2.95 SS G_CDS: -7.81 Total: -10.76 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.32 Total: 1.05 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -1.43 Total: -0.41 kcal Atomic # 8 Polarization: -0.60 SS G_CDS: -0.38 Total: -0.98 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.03 Total: -5.91 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -2.03 -10.52 -12.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716499058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 316.365 kcal (2) G-P(sol) polarization free energy of solvation -2.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 314.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 303.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds