Wall clock time and date at job start Mon Mar 30 2020 06:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.47203 * 2 1 4 4 C 1.46900 * 110.99899 * 227.80177 * 3 2 1 5 5 C 1.53175 * 109.54121 * 76.61187 * 4 3 2 6 6 C 1.53096 * 109.21329 * 183.18183 * 5 4 3 7 7 O 1.42908 * 109.41253 * 57.57370 * 6 5 4 8 8 C 1.42905 * 114.09903 * 298.83933 * 7 6 5 9 9 C 1.53093 * 109.40960 * 61.16058 * 8 7 6 10 10 C 1.46897 * 110.99930 * 103.84766 * 3 2 1 11 11 H 1.09001 * 109.47459 * 328.51967 * 10 3 2 12 12 C 1.52998 * 109.47275 * 208.51909 * 10 3 2 13 13 C 1.52995 * 109.47373 * 300.00117 * 12 10 3 14 14 C 1.53007 * 109.47119 * 300.00152 * 13 12 10 15 15 C 1.52998 * 109.47122 * 59.99694 * 14 13 12 16 16 C 1.53000 * 109.47395 * 88.51862 * 10 3 2 17 17 C 1.50700 * 109.46905 * 300.00307 * 16 10 3 18 18 N 1.27940 * 120.00180 * 42.89837 * 17 16 10 19 19 Si 1.86803 * 119.99843 * 222.89682 * 17 16 10 20 20 H 1.48502 * 109.47084 * 0.02562 * 19 17 16 21 21 H 1.48498 * 109.47178 * 119.99916 * 19 17 16 22 22 H 1.48503 * 109.47051 * 240.00353 * 19 17 16 23 23 H 1.08997 * 109.46688 * 292.79688 * 1 2 3 24 24 H 1.09000 * 109.46960 * 52.79706 * 1 2 3 25 25 H 1.08999 * 109.46821 * 172.79643 * 1 2 3 26 26 H 1.09006 * 109.47070 * 239.99898 * 2 1 3 27 27 H 1.09003 * 109.46876 * 120.00389 * 2 1 3 28 28 H 1.09004 * 109.60895 * 196.82883 * 4 3 2 29 29 H 1.08998 * 109.52711 * 63.24818 * 5 4 3 30 30 H 1.08996 * 109.52283 * 303.11604 * 5 4 3 31 31 H 1.08998 * 109.48220 * 177.55861 * 6 5 4 32 32 H 1.08997 * 109.48179 * 297.58217 * 6 5 4 33 33 H 1.08995 * 109.47821 * 181.14253 * 8 7 6 34 34 H 1.08998 * 109.47920 * 301.18042 * 8 7 6 35 35 H 1.09008 * 109.52238 * 62.29836 * 9 8 7 36 36 H 1.08998 * 109.52154 * 182.41889 * 9 8 7 37 37 H 1.09002 * 109.46884 * 60.00141 * 12 10 3 38 38 H 1.08996 * 109.47278 * 179.97438 * 12 10 3 39 39 H 1.09005 * 109.47192 * 59.99764 * 13 12 10 40 40 H 1.08999 * 109.47490 * 179.97438 * 13 12 10 41 41 H 1.08998 * 109.47098 * 180.02562 * 14 13 12 42 42 H 1.08996 * 109.46687 * 299.99770 * 14 13 12 43 43 H 1.05374 * 85.56359 * 112.49868 * 28 4 3 44 44 H 1.08996 * 109.47187 * 180.02562 * 15 14 13 45 45 H 1.08996 * 109.47590 * 179.97438 * 16 10 3 46 46 H 0.97004 * 120.00200 * 142.52341 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.0637 1.5742 -1.0160 5 6 2.4188 1.6660 -2.4023 6 6 3.5173 1.7832 -3.4622 7 8 4.3946 0.6594 -3.3634 8 6 5.0634 0.5502 -2.1052 9 6 4.0270 0.3834 -0.9909 10 6 2.5047 1.7718 1.3316 11 1 1.9315 1.2448 2.0943 12 6 2.3345 3.2809 1.5177 13 6 3.1390 4.0208 0.4472 14 6 4.6189 3.6545 0.5772 15 6 4.7890 2.1454 0.3910 16 6 3.9845 1.4056 1.4617 17 6 4.1520 -0.0808 1.2784 18 7 3.5129 -0.6870 0.3505 19 14 5.2930 -1.0382 2.4058 20 1 5.9088 -0.1117 3.3895 21 1 4.5177 -2.0800 3.1259 22 1 6.3592 -1.6839 1.5986 23 1 -0.3632 0.3982 0.9474 24 1 -0.3633 0.6214 -0.8185 25 1 -0.3633 -1.0196 -0.1289 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.6141 2.4918 -0.8084 29 1 1.7745 2.5440 -2.4470 30 1 1.8270 0.7699 -2.5888 31 1 3.0650 1.8052 -4.4537 32 1 4.0824 2.7010 -3.3001 33 1 5.7248 -0.3161 -2.1192 34 1 5.6488 1.4519 -1.9252 35 1 3.4682 -0.5393 -1.1482 36 1 4.5327 0.3430 -0.0262 37 1 1.2803 3.5418 1.4250 38 1 2.6939 3.5679 2.5059 39 1 2.7792 3.7337 -0.5409 40 1 3.0175 5.0959 0.5795 41 1 5.1921 4.1819 -0.1852 42 1 4.9787 3.9415 1.5652 43 1 4.4292 1.8583 -0.5969 44 1 5.8432 1.8844 0.4841 45 1 4.3444 1.6931 2.4496 46 1 3.9366 -1.4102 -0.1377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716499058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:50 Heat of formation + Delta-G solvation = 310.489100 kcal Electronic energy + Delta-G solvation = -25066.278580 eV Core-core repulsion = 22085.216074 eV Total energy + Delta-G solvation = -2981.062507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.202 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.20623 -39.26284 -38.29235 -36.20966 -34.24025 -32.03152 -31.88492 -31.09496 -28.88888 -25.47863 -25.12068 -24.06954 -23.84950 -22.66747 -21.39998 -21.18580 -19.97877 -18.07161 -17.24101 -17.02435 -16.65037 -16.13629 -15.91887 -15.74002 -15.60241 -15.13386 -14.81718 -14.39074 -14.13854 -14.07870 -13.87038 -13.53088 -13.17520 -13.10275 -12.95445 -12.78109 -12.55699 -12.50867 -12.26108 -12.14862 -11.87373 -11.75130 -11.62886 -11.54126 -11.30875 -10.97850 -10.72503 -10.66702 -9.96289 -9.53884 -8.75132 -8.26896 0.50967 1.32231 1.51250 1.66940 1.99829 2.98182 3.10115 3.50609 3.73311 3.85840 3.87390 3.98971 4.09907 4.16158 4.25101 4.27196 4.36291 4.41413 4.46996 4.52362 4.55106 4.63457 4.66389 4.67627 4.74901 4.77835 4.80943 4.85595 4.86555 4.97567 5.01681 5.08760 5.19554 5.20701 5.22505 5.27525 5.28135 5.33112 5.36124 5.40173 5.46183 5.49642 5.60547 5.66872 6.30033 6.44579 6.48226 6.49728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.078 3.922 3 N -0.512 5.512 4 C 0.036 3.964 5 C -0.146 4.146 6 C 0.056 3.944 7 O -0.405 6.405 8 C 0.042 3.958 9 C -0.303 4.303 10 C 0.094 3.906 11 H 0.070 0.930 12 C -0.107 4.107 13 C -0.130 4.130 14 C -0.122 4.122 15 C -0.239 4.239 16 C -0.056 4.056 17 C -0.235 4.235 18 N -0.482 5.482 19 Si 0.995 3.005 20 H -0.256 1.256 21 H -0.283 1.283 22 H -0.259 1.259 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.162 0.838 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.153 0.847 36 H 0.207 0.793 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.182 0.818 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 0.832 0.409 2.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.050 4.050 3 N -0.233 5.233 4 C -0.071 4.071 5 C -0.184 4.184 6 C -0.021 4.021 7 O -0.324 6.324 8 C -0.035 4.035 9 C -0.343 4.343 10 C -0.015 4.015 11 H 0.089 0.911 12 C -0.145 4.145 13 C -0.167 4.167 14 C -0.159 4.159 15 C -0.275 4.275 16 C -0.077 4.077 17 C -0.464 4.464 18 N -0.114 5.114 19 Si 0.818 3.182 20 H -0.179 1.179 21 H -0.209 1.209 22 H -0.184 1.184 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.178 0.822 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.222 0.778 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.198 0.802 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.229 0.616 0.424 1.438 hybrid contribution 0.780 -0.718 0.501 1.173 sum 2.009 -0.102 0.925 2.214 Atomic orbital electron populations 1.22063 0.98296 1.00246 1.00837 1.22468 0.91349 0.88721 1.02472 1.62264 1.33911 1.23176 1.03951 1.23517 0.91754 1.00272 0.91568 1.22273 0.98428 1.02820 0.94908 1.22698 0.90776 0.88718 0.99861 1.87912 1.60252 1.48541 1.35730 1.23360 0.94485 1.02677 0.83017 1.27511 1.01016 1.00247 1.05485 1.21658 0.93210 0.95787 0.90849 0.91138 1.21520 1.00152 0.93975 0.98827 1.21719 0.95074 0.99833 1.00101 1.21586 0.96284 0.95665 1.02410 1.24736 1.01067 0.95206 1.06472 1.20732 0.96880 0.89459 1.00607 1.28519 1.13468 1.00687 1.03704 1.71937 1.24834 1.12338 1.02295 0.84486 0.76840 0.77895 0.78974 1.17937 1.20902 1.18363 0.94084 0.93694 0.93123 0.91685 0.90696 0.82187 0.90550 0.92463 0.88588 0.92344 0.88276 0.92072 0.83196 0.77832 0.92235 0.91479 0.90848 0.92033 0.91305 0.91931 0.80226 0.91455 0.89618 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.37 10.24 71.98 0.74 0.36 16 2 C 0.08 0.04 3.49 86.31 0.30 0.34 16 3 N -0.51 0.04 4.01 ******* -4.24 -4.20 16 4 C 0.04 -0.06 0.58 45.03 0.03 -0.04 16 5 C -0.15 0.03 5.54 30.68 0.17 0.20 16 6 C 0.06 -0.02 6.84 72.01 0.49 0.48 16 7 O -0.41 -1.16 10.77 -148.98 -1.60 -2.76 16 8 C 0.04 -0.10 6.56 72.01 0.47 0.38 16 9 C -0.30 1.07 1.72 36.95 0.06 1.13 16 10 C 0.09 -0.06 2.45 44.92 0.11 0.05 16 11 H 0.07 0.08 7.61 -2.39 -0.02 0.06 16 12 C -0.11 0.09 5.64 30.59 0.17 0.26 16 13 C -0.13 0.25 5.57 30.60 0.17 0.42 16 14 C -0.12 0.41 5.57 30.60 0.17 0.58 16 15 C -0.24 0.89 3.19 30.60 0.10 0.99 16 16 C -0.06 0.15 2.01 -11.54 -0.02 0.13 16 17 C -0.23 0.80 2.84 88.68 0.25 1.05 16 18 N -0.48 2.01 3.10 -446.11 -1.38 0.63 16 19 Si 0.99 -1.91 29.61 68.60 2.03 0.12 16 20 H -0.26 -0.03 7.11 99.48 0.71 0.68 16 21 H -0.28 -0.66 7.11 99.48 0.71 0.04 16 22 H -0.26 0.36 7.11 99.48 0.71 1.07 16 23 H 0.04 0.15 8.14 -2.39 -0.02 0.13 16 24 H 0.04 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.06 0.02 4.68 -2.38 -0.01 0.01 16 27 H 0.08 0.04 4.95 -31.31 -0.15 -0.11 16 28 H 0.16 -0.41 1.74 -18.94 -0.03 -0.44 16 29 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.14 7.20 -2.39 -0.02 0.13 16 31 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.06 -0.23 7.07 -2.39 -0.02 -0.24 16 35 H 0.15 -0.52 3.54 -115.19 -0.41 -0.93 16 36 H 0.21 -0.99 1.31 -192.57 -0.25 -1.24 16 37 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.07 -0.07 5.51 -2.38 -0.01 -0.08 16 40 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.18 -0.71 0.47 -122.98 -0.06 -0.77 16 44 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.09 -0.25 7.60 -2.39 -0.02 -0.27 16 46 H 0.35 -2.61 6.96 -92.71 -0.65 -3.26 16 Total: 0.00 -4.96 295.53 -1.76 -6.72 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: 0.22 Total: -6.85 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 3.21 Total: 6.33 kcal Atomic # 7 Polarization: 2.05 SS G_CDS: -5.62 Total: -3.57 kcal Atomic # 8 Polarization: -1.16 SS G_CDS: -1.60 Total: -2.76 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: 2.03 Total: 0.12 kcal Total: -4.96 -1.76 -6.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716499058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 317.209 kcal (2) G-P(sol) polarization free energy of solvation -4.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 312.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 310.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds