Wall clock time and date at job start Mon Mar 30 2020 08:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00203 * 2 1 4 4 H 1.08999 * 108.85587 * 31.43758 * 3 2 1 5 5 C 1.54070 * 108.79720 * 272.91997 * 3 2 1 6 6 C 1.54066 * 112.81819 * 197.56139 * 5 3 2 7 7 C 1.50549 * 112.41470 * 318.28392 * 6 5 3 8 8 C 1.54240 * 108.48706 * 94.26213 * 7 6 5 9 9 H 1.09002 * 108.89145 * 40.58583 * 8 7 6 10 10 N 1.46903 * 108.89618 * 159.17591 * 8 7 6 11 11 C 1.46896 * 111.00136 * 276.39858 * 10 8 7 12 12 C 1.52997 * 109.47269 * 185.38615 * 11 10 8 13 13 C 1.50700 * 115.55026 * 294.79238 * 12 11 10 14 14 H 1.08006 * 119.99899 * 99.40445 * 13 12 11 15 15 C 1.37878 * 120.00168 * 279.41402 * 13 12 11 16 16 N 1.31513 * 119.99861 * 5.43767 * 15 13 12 17 17 Si 1.86802 * 120.00098 * 185.44052 * 15 13 12 18 18 H 1.48502 * 109.46939 * 269.99598 * 17 15 13 19 19 H 1.48502 * 109.46860 * 29.99739 * 17 15 13 20 20 H 1.48502 * 109.47083 * 149.99709 * 17 15 13 21 21 C 1.52996 * 117.51855 * 80.49126 * 12 11 10 22 22 C 1.52995 * 117.50205 * 149.12147 * 12 11 10 23 23 C 1.45537 * 112.33208 * 279.88489 * 8 7 6 24 24 C 1.50477 * 108.87847 * 149.99977 * 3 2 1 25 25 H 1.09001 * 109.47189 * 300.00463 * 1 2 3 26 26 H 1.09009 * 109.46708 * 60.00392 * 1 2 3 27 27 H 1.08993 * 109.47371 * 179.97438 * 1 2 3 28 28 H 1.09000 * 108.81448 * 318.42811 * 5 3 2 29 29 H 1.09007 * 108.81295 * 76.70086 * 5 3 2 30 30 H 1.09005 * 108.87557 * 79.06175 * 6 5 3 31 31 H 1.08998 * 108.87370 * 197.60428 * 6 5 3 32 32 H 1.09005 * 109.71792 * 334.52652 * 7 6 5 33 33 H 1.08999 * 109.57787 * 213.92556 * 7 6 5 34 34 H 1.00898 * 110.99901 * 40.35643 * 10 8 7 35 35 H 1.09000 * 109.47404 * 65.38383 * 11 10 8 36 36 H 1.09003 * 109.47158 * 305.38339 * 11 10 8 37 37 H 0.97001 * 120.00030 * 354.99261 * 16 15 13 38 38 H 1.09005 * 117.50253 * 214.97336 * 21 12 11 39 39 H 1.09004 * 117.50352 * 359.97438 * 21 12 11 40 40 H 1.09004 * 117.49836 * 359.97438 * 22 12 11 41 41 H 1.08999 * 117.50295 * 144.97256 * 22 12 11 42 42 H 1.08999 * 108.89814 * 182.73453 * 23 8 7 43 43 H 1.09000 * 108.89514 * 301.32913 * 23 8 7 44 44 H 1.08997 * 109.63139 * 95.11531 * 24 3 2 45 45 H 1.09007 * 109.62567 * 334.53826 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3496 1.9852 0.5380 5 6 2.1443 1.7892 -1.4566 6 6 3.1289 2.9645 -1.6077 7 6 2.9832 3.9805 -0.5063 8 6 4.0005 3.6473 0.6042 9 1 4.9414 3.3478 0.1426 10 7 4.2307 4.8504 1.4151 11 6 5.2361 5.7211 0.7915 12 6 5.5468 6.8921 1.7259 13 6 4.4066 7.8454 1.9747 14 1 3.8216 7.7635 2.8789 15 6 4.1099 8.8222 1.0478 16 7 4.7506 8.8556 -0.1002 17 14 2.7979 10.0980 1.4228 18 1 1.4782 9.6030 0.9553 19 1 2.7459 10.3388 2.8872 20 1 3.1268 11.3663 0.7238 21 6 6.5189 6.6371 2.8796 22 6 6.9596 7.4774 1.6794 23 6 3.5392 2.5746 1.4729 24 6 3.3348 1.2486 0.7119 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 2.4907 0.9590 -2.0723 29 1 1.1638 2.1038 -1.8142 30 1 4.1470 2.5753 -1.5971 31 1 2.9490 3.4544 -2.5646 32 1 1.9723 3.9408 -0.1006 33 1 3.1839 4.9770 -0.8997 34 1 3.3685 5.3497 1.5741 35 1 4.8500 6.1031 -0.1536 36 1 6.1469 5.1511 0.6080 37 1 5.4811 8.2393 -0.2661 38 1 6.3336 7.1589 3.8185 39 1 6.9369 5.6348 2.9734 40 1 7.6679 7.0280 0.9833 41 1 7.0644 8.5521 1.8283 42 1 4.2745 2.4187 2.2623 43 1 2.5927 2.8694 1.9258 44 1 4.1360 1.1164 -0.0152 45 1 3.3359 0.4176 1.4174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718286693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:59 Heat of formation + Delta-G solvation = -43.500794 kcal Electronic energy + Delta-G solvation = -21452.571568 eV Core-core repulsion = 18469.814647 eV Total energy + Delta-G solvation = -2982.756921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.66950 -37.65189 -36.57749 -33.66485 -32.05334 -31.85381 -29.59957 -26.74101 -25.52465 -24.73977 -24.00221 -22.77404 -21.12416 -20.39506 -19.53864 -19.21847 -16.80951 -16.49421 -15.79018 -15.54246 -14.85022 -14.44590 -14.33773 -13.81631 -13.75064 -13.67838 -13.49693 -12.93768 -12.65252 -12.17377 -12.09239 -11.98853 -11.77773 -11.53145 -11.22473 -11.06883 -10.89355 -10.81196 -10.57258 -10.39047 -10.30517 -10.27791 -10.22939 -10.13253 -9.57424 -9.42889 -8.48543 -8.35838 -8.24350 -7.55547 -6.32307 -4.05978 3.40685 3.45566 3.60800 3.66878 4.50131 4.53396 4.66948 4.85693 5.05747 5.10849 5.21344 5.21447 5.25923 5.31986 5.35640 5.40428 5.46164 5.50275 5.52362 5.71074 5.86020 5.95041 5.96820 6.03783 6.08072 6.13131 6.25073 6.30412 6.37014 6.38730 6.40077 6.51589 6.60312 6.65931 6.72669 6.79551 6.97375 7.13588 7.34739 7.35289 7.93006 8.22436 8.34559 8.46826 8.91640 9.68715 11.06313 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.004678 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.667717 B = 5983.642723 C = 6527.344517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.092 3.908 4 H 0.059 0.941 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.152 4.152 8 C 0.087 3.913 9 H 0.065 0.935 10 N -0.676 5.676 11 C 0.102 3.898 12 C 0.030 3.970 13 C -0.567 4.567 14 H 0.052 0.948 15 C 0.026 3.974 16 N -0.909 5.909 17 Si 1.066 2.934 18 H -0.290 1.290 19 H -0.289 1.289 20 H -0.286 1.286 21 C -0.184 4.184 22 C -0.189 4.189 23 C -0.102 4.102 24 C -0.113 4.113 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.349 0.651 35 H 0.029 0.971 36 H 0.037 0.963 37 H 0.275 0.725 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 -14.399 -1.439 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C 0.035 3.965 4 H 0.077 0.923 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.191 4.191 8 C -0.023 4.023 9 H 0.083 0.917 10 N -0.306 5.306 11 C -0.027 4.027 12 C 0.029 3.971 13 C -0.605 4.605 14 H 0.070 0.930 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.895 3.105 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.211 1.211 21 C -0.221 4.221 22 C -0.227 4.227 23 C -0.140 4.140 24 C -0.152 4.152 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.168 0.832 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.863 -13.557 -1.664 14.864 hybrid contribution 0.122 -0.616 -0.214 0.664 sum -5.741 -14.173 -1.879 15.407 Atomic orbital electron populations 1.22746 0.81654 1.02306 0.99912 1.87935 1.19262 1.28714 1.95119 1.22088 0.95387 0.83680 0.95386 0.92285 1.22400 0.99818 0.98402 0.96814 1.21225 0.99309 0.95316 0.98979 1.22163 1.00436 0.99408 0.97061 1.20521 0.97253 0.92431 0.92107 0.91657 1.60619 1.14840 1.07974 1.47144 1.21523 0.92862 0.92431 0.95928 1.19039 0.89237 0.94251 0.94599 1.21326 1.15834 1.15294 1.08080 0.92997 1.25723 1.00970 0.98329 0.92954 1.70700 1.21511 1.40045 1.22139 0.83584 0.75310 0.76295 0.75292 1.21637 1.21490 1.21139 1.22697 1.07369 0.98416 0.93607 1.22800 1.00513 0.98461 1.00933 1.20394 1.02201 0.92888 0.98516 1.21416 0.95819 0.98364 0.99566 0.94100 0.94273 0.90014 0.91498 0.92569 0.91947 0.92270 0.91900 0.91140 0.83211 0.95238 0.94446 0.91408 0.90696 0.91466 0.91906 0.90194 0.90865 0.92229 0.91127 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.78 101.05 1.09 1.37 16 2 O -0.39 -4.77 10.18 -35.23 -0.36 -5.12 16 3 C 0.09 1.09 2.12 -27.43 -0.06 1.03 16 4 H 0.06 0.71 6.25 -51.93 -0.32 0.39 16 5 C -0.14 -1.57 5.34 -25.62 -0.14 -1.71 16 6 C -0.11 -1.39 5.32 -27.40 -0.15 -1.53 16 7 C -0.15 -2.24 4.91 -27.31 -0.13 -2.37 16 8 C 0.09 1.35 1.98 -70.58 -0.14 1.21 16 9 H 0.07 1.04 7.00 -51.93 -0.36 0.67 16 10 N -0.68 -12.93 6.12 -109.80 -0.67 -13.60 16 11 C 0.10 2.22 5.17 -3.83 -0.02 2.20 16 12 C 0.03 0.71 1.08 -155.67 -0.17 0.55 16 13 C -0.57 -15.24 8.31 -34.44 -0.29 -15.53 16 14 H 0.05 1.43 7.82 -52.48 -0.41 1.02 16 15 C 0.03 0.70 5.42 -17.82 -0.10 0.60 16 16 N -0.91 -26.26 13.61 55.43 0.75 -25.51 16 17 Si 1.07 24.60 29.91 -169.99 -5.08 19.52 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.18 -4.10 9.95 -26.74 -0.27 -4.37 16 22 C -0.19 -4.41 8.96 -26.74 -0.24 -4.65 16 23 C -0.10 -1.38 4.77 -29.60 -0.14 -1.52 16 24 C -0.11 -1.36 5.32 -27.34 -0.15 -1.51 16 25 H 0.04 0.35 8.07 -51.93 -0.42 -0.07 16 26 H 0.04 0.34 8.05 -51.92 -0.42 -0.08 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 29 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.06 0.78 6.63 -51.93 -0.34 0.44 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.90 6.97 -51.93 -0.36 0.54 16 33 H 0.07 1.23 7.16 -51.93 -0.37 0.86 16 34 H 0.35 7.13 8.06 -39.29 -0.32 6.82 16 35 H 0.03 0.70 6.79 -51.93 -0.35 0.35 16 36 H 0.04 0.78 7.85 -51.93 -0.41 0.37 16 37 H 0.27 7.91 6.08 -40.82 -0.25 7.66 16 38 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.81 7.46 -51.93 -0.39 0.43 16 44 H 0.07 0.84 6.98 -51.93 -0.36 0.48 16 45 H 0.07 0.88 7.98 -51.93 -0.41 0.46 16 LS Contribution 342.97 15.07 5.17 5.17 Total: -1.00 -28.21 342.97 -9.18 -37.39 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.10 Total: 8.37 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -0.89 Total: -26.22 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.08 Total: -39.11 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.36 Total: -5.12 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.21 -9.18 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.108 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds