Wall clock time and date at job start Mon Mar 30 2020 08:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00203 * 2 1 4 4 H 1.08999 * 108.85587 * 31.43758 * 3 2 1 5 5 C 1.54070 * 108.79720 * 272.91997 * 3 2 1 6 6 C 1.54066 * 112.81819 * 197.56139 * 5 3 2 7 7 C 1.50549 * 112.41470 * 318.28392 * 6 5 3 8 8 C 1.54240 * 108.48706 * 94.26213 * 7 6 5 9 9 H 1.09002 * 108.89145 * 40.58583 * 8 7 6 10 10 N 1.46903 * 108.89618 * 159.17591 * 8 7 6 11 11 C 1.46896 * 111.00136 * 276.39858 * 10 8 7 12 12 C 1.52997 * 109.47269 * 185.38615 * 11 10 8 13 13 C 1.50700 * 115.55026 * 294.79238 * 12 11 10 14 14 H 1.08006 * 119.99899 * 99.40445 * 13 12 11 15 15 C 1.37878 * 120.00168 * 279.41402 * 13 12 11 16 16 N 1.31513 * 119.99861 * 5.43767 * 15 13 12 17 17 Si 1.86802 * 120.00098 * 185.44052 * 15 13 12 18 18 H 1.48502 * 109.46939 * 269.99598 * 17 15 13 19 19 H 1.48502 * 109.46860 * 29.99739 * 17 15 13 20 20 H 1.48502 * 109.47083 * 149.99709 * 17 15 13 21 21 C 1.52996 * 117.51855 * 80.49126 * 12 11 10 22 22 C 1.52995 * 117.50205 * 149.12147 * 12 11 10 23 23 C 1.45537 * 112.33208 * 279.88489 * 8 7 6 24 24 C 1.50477 * 108.87847 * 149.99977 * 3 2 1 25 25 H 1.09001 * 109.47189 * 300.00463 * 1 2 3 26 26 H 1.09009 * 109.46708 * 60.00392 * 1 2 3 27 27 H 1.08993 * 109.47371 * 179.97438 * 1 2 3 28 28 H 1.09000 * 108.81448 * 318.42811 * 5 3 2 29 29 H 1.09007 * 108.81295 * 76.70086 * 5 3 2 30 30 H 1.09005 * 108.87557 * 79.06175 * 6 5 3 31 31 H 1.08998 * 108.87370 * 197.60428 * 6 5 3 32 32 H 1.09005 * 109.71792 * 334.52652 * 7 6 5 33 33 H 1.08999 * 109.57787 * 213.92556 * 7 6 5 34 34 H 1.00898 * 110.99901 * 40.35643 * 10 8 7 35 35 H 1.09000 * 109.47404 * 65.38383 * 11 10 8 36 36 H 1.09003 * 109.47158 * 305.38339 * 11 10 8 37 37 H 0.97001 * 120.00030 * 354.99261 * 16 15 13 38 38 H 1.09005 * 117.50253 * 214.97336 * 21 12 11 39 39 H 1.09004 * 117.50352 * 359.97438 * 21 12 11 40 40 H 1.09004 * 117.49836 * 359.97438 * 22 12 11 41 41 H 1.08999 * 117.50295 * 144.97256 * 22 12 11 42 42 H 1.08999 * 108.89814 * 182.73453 * 23 8 7 43 43 H 1.09000 * 108.89514 * 301.32913 * 23 8 7 44 44 H 1.08997 * 109.63139 * 95.11531 * 24 3 2 45 45 H 1.09007 * 109.62567 * 334.53826 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3496 1.9852 0.5380 5 6 2.1443 1.7892 -1.4566 6 6 3.1289 2.9645 -1.6077 7 6 2.9832 3.9805 -0.5063 8 6 4.0005 3.6473 0.6042 9 1 4.9414 3.3478 0.1426 10 7 4.2307 4.8504 1.4151 11 6 5.2361 5.7211 0.7915 12 6 5.5468 6.8921 1.7259 13 6 4.4066 7.8454 1.9747 14 1 3.8216 7.7635 2.8789 15 6 4.1099 8.8222 1.0478 16 7 4.7506 8.8556 -0.1002 17 14 2.7979 10.0980 1.4228 18 1 1.4782 9.6030 0.9553 19 1 2.7459 10.3388 2.8872 20 1 3.1268 11.3663 0.7238 21 6 6.5189 6.6371 2.8796 22 6 6.9596 7.4774 1.6794 23 6 3.5392 2.5746 1.4729 24 6 3.3348 1.2486 0.7119 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 2.4907 0.9590 -2.0723 29 1 1.1638 2.1038 -1.8142 30 1 4.1470 2.5753 -1.5971 31 1 2.9490 3.4544 -2.5646 32 1 1.9723 3.9408 -0.1006 33 1 3.1839 4.9770 -0.8997 34 1 3.3685 5.3497 1.5741 35 1 4.8500 6.1031 -0.1536 36 1 6.1469 5.1511 0.6080 37 1 5.4811 8.2393 -0.2661 38 1 6.3336 7.1589 3.8185 39 1 6.9369 5.6348 2.9734 40 1 7.6679 7.0280 0.9833 41 1 7.0644 8.5521 1.8283 42 1 4.2745 2.4187 2.2623 43 1 2.5927 2.8694 1.9258 44 1 4.1360 1.1164 -0.0152 45 1 3.3359 0.4176 1.4174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718286693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:58 Heat of formation + Delta-G solvation = -59.460097 kcal Electronic energy + Delta-G solvation = -21453.263616 eV Core-core repulsion = 18469.814647 eV Total energy + Delta-G solvation = -2983.448968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76373 -39.08593 -38.00585 -34.96502 -33.92667 -33.12845 -30.85239 -27.55714 -27.20330 -26.50649 -25.12885 -24.05863 -22.96606 -21.73488 -21.04829 -20.51862 -18.44921 -17.73241 -16.93219 -16.59582 -16.03541 -16.00723 -15.66619 -15.61704 -15.11626 -14.75417 -14.71068 -14.45479 -14.09716 -13.95586 -13.43560 -13.13504 -12.85575 -12.83469 -12.64255 -12.59199 -12.21999 -12.16864 -12.00704 -11.94952 -11.91272 -11.58418 -11.45340 -11.26172 -11.23119 -10.46487 -10.44281 -10.37282 -10.16410 -9.14141 -8.48692 -6.22566 1.54008 1.61748 1.79008 2.58824 2.80616 3.13619 3.28166 3.53874 3.58329 3.82561 3.98877 4.10708 4.20321 4.22738 4.24970 4.38281 4.42748 4.46488 4.52328 4.53339 4.55508 4.62325 4.74012 4.77785 4.85159 4.87192 4.88649 4.91235 4.96970 5.02782 5.10582 5.13229 5.23918 5.24666 5.35782 5.38220 5.47642 5.49100 5.52773 6.22301 6.29382 6.32003 6.35455 6.61362 6.78612 7.58144 8.90235 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.004678 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.667717 B = 5983.642723 C = 6527.344517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.093 3.907 4 H 0.057 0.943 5 C -0.130 4.130 6 C -0.106 4.106 7 C -0.143 4.143 8 C 0.091 3.909 9 H 0.064 0.936 10 N -0.675 5.675 11 C 0.118 3.882 12 C 0.004 3.996 13 C -0.572 4.572 14 H 0.040 0.960 15 C -0.018 4.018 16 N -0.934 5.934 17 Si 1.108 2.892 18 H -0.276 1.276 19 H -0.276 1.276 20 H -0.288 1.288 21 C -0.165 4.165 22 C -0.190 4.190 23 C -0.095 4.095 24 C -0.106 4.106 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.339 0.661 35 H 0.001 0.999 36 H 0.047 0.953 37 H 0.265 0.735 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 -15.866 -1.170 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.035 3.965 4 H 0.075 0.925 5 C -0.168 4.168 6 C -0.144 4.144 7 C -0.182 4.182 8 C -0.018 4.018 9 H 0.082 0.918 10 N -0.305 5.305 11 C -0.012 4.012 12 C 0.003 3.997 13 C -0.610 4.610 14 H 0.059 0.941 15 C -0.218 4.218 16 N -0.570 5.570 17 Si 0.932 3.068 18 H -0.202 1.202 19 H -0.201 1.201 20 H -0.214 1.214 21 C -0.202 4.202 22 C -0.229 4.229 23 C -0.133 4.133 24 C -0.144 4.144 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.157 0.843 35 H 0.019 0.981 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.622 -15.054 -1.385 16.504 hybrid contribution 0.366 -0.201 -0.263 0.494 sum -6.256 -15.256 -1.648 16.571 Atomic orbital electron populations 1.22938 0.80213 1.03657 1.00444 1.87907 1.20884 1.28559 1.95207 1.22032 0.95217 0.83830 0.95388 0.92537 1.22331 0.99732 0.97855 0.96857 1.21163 0.99962 0.95185 0.98071 1.22029 1.00354 0.98349 0.97486 1.20601 0.97557 0.91368 0.92295 0.91800 1.60645 1.13897 1.08162 1.47751 1.21248 0.93768 0.92067 0.94131 1.19179 0.88964 0.95023 0.96486 1.21534 1.16334 1.15782 1.07356 0.94137 1.26899 1.02348 0.99990 0.92533 1.70804 1.22310 1.40639 1.23258 0.83028 0.73852 0.74143 0.75788 1.20213 1.20145 1.21441 1.22688 1.05658 0.99111 0.92716 1.22733 1.00511 0.97512 1.02115 1.20286 1.01881 0.92987 0.98110 1.21332 0.96162 0.97312 0.99588 0.93660 0.93654 0.88355 0.90884 0.91916 0.91689 0.92049 0.91429 0.94342 0.84276 0.98061 0.93453 0.92471 0.91027 0.89320 0.90307 0.92331 0.91235 0.92311 0.90832 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.78 113.37 1.22 1.60 16 2 O -0.41 -8.96 10.18 -148.98 -1.52 -10.47 16 3 C 0.09 2.01 2.12 30.14 0.06 2.07 16 4 H 0.06 1.25 6.25 -2.39 -0.01 1.24 16 5 C -0.13 -2.72 5.34 31.32 0.17 -2.55 16 6 C -0.11 -2.53 5.32 30.16 0.16 -2.37 16 7 C -0.14 -4.18 4.91 30.22 0.15 -4.03 16 8 C 0.09 2.76 1.98 43.06 0.09 2.84 16 9 H 0.06 1.96 7.00 -2.39 -0.02 1.94 16 10 N -0.68 -25.67 6.12 -501.29 -3.07 -28.74 16 11 C 0.12 5.15 5.17 86.30 0.45 5.59 16 12 C 0.00 0.20 1.08 -52.93 -0.06 0.15 16 13 C -0.57 -30.98 8.31 25.60 0.21 -30.77 16 14 H 0.04 2.24 7.82 -2.91 -0.02 2.21 16 15 C -0.02 -0.98 5.42 84.66 0.46 -0.52 16 16 N -0.93 -54.86 13.61 21.45 0.29 -54.56 16 17 Si 1.11 49.60 29.91 68.60 2.05 51.65 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 C -0.16 -7.17 9.95 30.59 0.30 -6.86 16 22 C -0.19 -8.86 8.96 30.59 0.27 -8.59 16 23 C -0.09 -2.42 4.77 28.73 0.14 -2.29 16 24 C -0.11 -2.32 5.32 30.20 0.16 -2.16 16 25 H 0.04 0.69 8.07 -2.39 -0.02 0.67 16 26 H 0.04 0.67 8.05 -2.38 -0.02 0.65 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 29 H 0.06 1.24 8.11 -2.38 -0.02 1.22 16 30 H 0.06 1.53 6.63 -2.38 -0.02 1.51 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.89 6.97 -2.38 -0.02 1.87 16 33 H 0.04 1.37 7.16 -2.39 -0.02 1.35 16 34 H 0.34 13.98 8.06 -89.70 -0.72 13.26 16 35 H 0.00 0.06 6.79 -2.39 -0.02 0.04 16 36 H 0.05 1.95 7.85 -2.39 -0.02 1.93 16 37 H 0.26 15.64 6.08 -92.71 -0.56 15.08 16 38 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 39 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 40 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 41 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.52 7.46 -2.39 -0.02 1.50 16 44 H 0.07 1.59 6.98 -2.39 -0.02 1.57 16 45 H 0.08 1.72 7.98 -2.38 -0.02 1.70 16 Total: -1.00 -59.70 342.97 1.97 -57.73 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.43 Total: 32.29 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 3.78 Total: -47.89 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -2.78 Total: -83.31 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -1.52 Total: -10.47 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.65 kcal Total: -59.70 1.97 -57.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.734 kcal (2) G-P(sol) polarization free energy of solvation -59.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds