Wall clock time and date at job start Mon Mar 30 2020 08:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00138 * 2 1 4 4 H 1.09004 * 108.85392 * 329.99721 * 3 2 1 5 5 C 1.50470 * 108.87778 * 88.55379 * 3 2 1 6 6 C 1.54234 * 108.51715 * 214.93292 * 5 3 2 7 7 C 1.45541 * 112.41599 * 280.00465 * 6 5 3 8 8 C 1.54240 * 112.40008 * 61.93352 * 7 6 5 9 9 H 1.09000 * 109.62673 * 39.74042 * 8 7 6 10 10 N 1.46898 * 109.62614 * 160.12263 * 8 7 6 11 11 C 1.46898 * 111.00026 * 275.00084 * 10 8 7 12 12 C 1.53002 * 109.47377 * 184.79735 * 11 10 8 13 13 C 1.50700 * 115.54790 * 39.55593 * 12 11 10 14 14 H 1.08007 * 119.99531 * 264.85026 * 13 12 11 15 15 C 1.37876 * 120.00125 * 84.85172 * 13 12 11 16 16 N 1.31515 * 120.00170 * 353.61352 * 15 13 12 17 17 Si 1.86803 * 119.99835 * 173.61263 * 15 13 12 18 18 H 1.48499 * 109.46980 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47050 * 120.00025 * 17 15 13 20 20 H 1.48500 * 109.46969 * 239.99770 * 17 15 13 21 21 C 1.52998 * 117.49990 * 253.84681 * 12 11 10 22 22 C 1.53002 * 60.00082 * 252.50839 * 21 12 11 23 23 C 1.50470 * 108.52930 * 280.02733 * 8 7 6 24 24 C 1.54002 * 112.55028 * 94.07246 * 23 8 7 25 25 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47656 * 300.00211 * 1 2 3 27 27 H 1.09008 * 109.47094 * 60.00093 * 1 2 3 28 28 H 1.08994 * 109.63169 * 334.64737 * 5 3 2 29 29 H 1.09004 * 109.62810 * 95.22830 * 5 3 2 30 30 H 1.09003 * 108.89193 * 40.76046 * 6 5 3 31 31 H 1.09005 * 108.89535 * 159.34440 * 6 5 3 32 32 H 1.08991 * 108.90189 * 182.69092 * 7 6 5 33 33 H 1.09003 * 108.89232 * 301.28164 * 7 6 5 34 34 H 1.00897 * 111.00411 * 38.95759 * 10 8 7 35 35 H 1.08999 * 109.47479 * 304.79864 * 11 10 8 36 36 H 1.09002 * 109.47521 * 64.79454 * 11 10 8 37 37 H 0.96992 * 119.99863 * 180.02562 * 16 15 13 38 38 H 1.09004 * 117.50010 * 359.97438 * 21 12 11 39 39 H 1.08997 * 117.50047 * 145.02265 * 21 12 11 40 40 H 1.08998 * 117.49865 * 252.51067 * 22 21 12 41 41 H 1.09001 * 117.50071 * 107.48774 * 22 21 12 42 42 H 1.09007 * 108.87817 * 214.92186 * 23 8 7 43 43 H 1.08994 * 108.88146 * 333.46490 * 23 8 7 44 44 H 1.08998 * 108.87397 * 197.51884 * 24 23 8 45 45 H 1.08994 * 108.72070 * 79.25514 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3374 1.9906 -0.5158 5 6 2.1754 1.7648 1.4233 6 6 1.9348 3.2873 1.4777 7 6 3.0986 4.0488 1.0489 8 6 3.4822 3.7605 -0.4170 9 1 2.5792 3.6720 -1.0211 10 7 4.3159 4.8543 -0.9331 11 6 3.4856 5.9574 -1.4349 12 6 4.3818 7.0218 -2.0711 13 6 5.5396 6.4973 -2.8808 14 1 6.5135 6.3929 -2.4256 15 6 5.3556 6.1506 -4.2025 16 7 4.1474 6.1577 -4.7221 17 14 6.8223 5.6710 -5.2552 18 1 8.0614 5.7434 -4.4400 19 1 6.6395 4.2854 -5.7569 20 1 6.9319 6.6036 -6.4056 21 6 4.5943 8.3227 -1.2943 22 6 3.7153 8.3143 -2.5466 23 6 4.2510 2.4679 -0.4648 24 6 3.3492 1.2550 -0.7604 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8901 28 1 1.4502 1.2565 2.0587 29 1 3.1861 1.5414 1.7652 30 1 1.0931 3.5349 0.8309 31 1 1.6878 3.5693 2.5013 32 1 2.8836 5.1120 1.1549 33 1 3.9428 3.7941 1.6898 34 1 4.9623 5.1792 -0.2298 35 1 2.7879 5.5768 -2.1808 36 1 2.9287 6.3982 -0.6081 37 1 4.0180 5.9135 -5.6518 38 1 4.0952 8.4204 -0.3302 39 1 5.5716 8.7994 -1.3687 40 1 4.1145 8.7854 -3.4448 41 1 2.6383 8.4063 -2.4062 42 1 5.0128 2.5391 -1.2411 43 1 4.7410 2.3132 0.4964 44 1 3.8790 0.3449 -0.4792 45 1 3.1447 1.2237 -1.8306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718286695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:31:02 Heat of formation + Delta-G solvation = -33.682066 kcal Electronic energy + Delta-G solvation = -21537.111768 eV Core-core repulsion = 18554.780619 eV Total energy + Delta-G solvation = -2982.331149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.59089 -37.45097 -36.36603 -33.51075 -32.17027 -31.73791 -29.51151 -26.72028 -25.63496 -24.89472 -23.75353 -22.60706 -21.05336 -20.58624 -19.41729 -18.76713 -16.71908 -15.99428 -15.70464 -15.48694 -14.71837 -14.34035 -14.26812 -14.20172 -13.84288 -13.51010 -13.20268 -12.95561 -12.69680 -12.17388 -11.99570 -11.89748 -11.51681 -11.38257 -11.02525 -10.88548 -10.77643 -10.73231 -10.65378 -10.50660 -10.37710 -10.18773 -10.06683 -9.99231 -9.53603 -9.34748 -8.74234 -8.26297 -7.96989 -7.34560 -5.86278 -3.86204 3.38876 3.47049 3.50814 3.72387 4.55086 4.62279 4.81443 4.93767 5.07283 5.17795 5.21703 5.33557 5.34961 5.40248 5.41055 5.46822 5.52158 5.55057 5.62575 5.72446 5.96018 5.99539 6.08576 6.13812 6.15687 6.23973 6.27410 6.36056 6.42278 6.46413 6.55043 6.58306 6.70314 6.74532 6.78799 7.02306 7.15523 7.22560 7.51859 7.54823 8.05484 8.13587 8.34714 8.63687 9.10027 9.76180 11.24500 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.005165 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.973542 B = 5419.841733 C = 6127.407608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.090 3.910 4 H 0.058 0.942 5 C -0.137 4.137 6 C -0.110 4.110 7 C -0.152 4.152 8 C 0.090 3.910 9 H 0.071 0.929 10 N -0.650 5.650 11 C 0.111 3.889 12 C 0.048 3.952 13 C -0.460 4.460 14 H 0.057 0.943 15 C 0.072 3.928 16 N -0.885 5.885 17 Si 0.886 3.114 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.289 1.289 21 C -0.219 4.219 22 C -0.159 4.159 23 C -0.106 4.106 24 C -0.110 4.110 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.331 0.669 35 H 0.068 0.932 36 H -0.008 1.008 37 H 0.254 0.746 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 -8.159 11.154 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C 0.033 3.967 4 H 0.076 0.924 5 C -0.175 4.175 6 C -0.148 4.148 7 C -0.192 4.192 8 C -0.021 4.021 9 H 0.089 0.911 10 N -0.278 5.278 11 C -0.018 4.018 12 C 0.048 3.952 13 C -0.499 4.499 14 H 0.075 0.925 15 C -0.129 4.129 16 N -0.523 5.523 17 Si 0.714 3.286 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.215 1.215 21 C -0.256 4.256 22 C -0.197 4.197 23 C -0.144 4.144 24 C -0.148 4.148 25 H 0.100 0.900 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.010 0.990 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.048 -8.636 10.335 14.764 hybrid contribution 0.028 0.421 0.197 0.465 sum -6.020 -8.216 10.532 14.651 Atomic orbital electron populations 1.22742 0.81659 1.02254 0.99888 1.87899 1.19189 1.28850 1.95175 1.22086 0.95587 0.83698 0.95338 0.92430 1.21889 1.02865 0.95714 0.97027 1.20374 0.98867 0.94535 1.01028 1.21332 0.98549 1.00092 0.99214 1.21339 0.96235 0.92702 0.91802 0.91050 1.60440 1.17964 1.10197 1.39176 1.21480 0.94159 0.91167 0.95038 1.18920 0.96365 0.84342 0.95594 1.20186 0.93532 1.42052 0.94086 0.92502 1.24847 0.95112 0.95147 0.97817 1.70014 1.20160 1.48689 1.13424 0.86651 0.83576 0.77905 0.80453 1.19910 1.21282 1.21506 1.23080 1.00349 1.07976 0.94222 1.22480 0.95196 1.05907 0.96124 1.21339 0.98390 0.92389 1.02271 1.21888 0.93981 0.98941 1.00012 0.90024 0.94310 0.94102 0.91631 0.90854 0.92441 0.92536 0.92343 0.92155 0.85159 0.91400 0.99027 0.93592 0.92223 0.90623 0.90143 0.92262 0.89672 0.92793 0.91441 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 101.05 1.08 1.39 16 2 O -0.39 -5.15 10.21 -35.23 -0.36 -5.51 16 3 C 0.09 1.16 2.13 -27.44 -0.06 1.10 16 4 H 0.06 0.76 6.23 -51.93 -0.32 0.44 16 5 C -0.14 -1.58 5.26 -27.35 -0.14 -1.73 16 6 C -0.11 -1.29 5.26 -29.60 -0.16 -1.44 16 7 C -0.15 -2.04 4.63 -29.60 -0.14 -2.18 16 8 C 0.09 1.44 2.12 -68.33 -0.15 1.29 16 9 H 0.07 1.24 6.57 -51.93 -0.34 0.90 16 10 N -0.65 -12.70 5.42 -107.38 -0.58 -13.29 16 11 C 0.11 2.41 5.56 -3.82 -0.02 2.39 16 12 C 0.05 1.17 1.73 -155.66 -0.27 0.90 16 13 C -0.46 -12.36 8.15 -34.44 -0.28 -12.64 16 14 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 15 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 16 N -0.88 -25.26 12.94 55.43 0.72 -24.54 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 C -0.22 -4.75 9.88 -26.73 -0.26 -5.01 16 22 C -0.16 -3.75 9.48 -26.73 -0.25 -4.00 16 23 C -0.11 -1.56 5.05 -27.47 -0.14 -1.70 16 24 C -0.11 -1.52 5.48 -25.65 -0.14 -1.66 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.35 7.73 -51.93 -0.40 -0.06 16 27 H 0.04 0.39 8.07 -51.92 -0.42 -0.02 16 28 H 0.07 0.71 7.49 -51.93 -0.39 0.32 16 29 H 0.07 0.85 6.97 -51.93 -0.36 0.49 16 30 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.84 7.27 -51.93 -0.38 0.46 16 33 H 0.06 0.77 7.47 -51.93 -0.39 0.38 16 34 H 0.33 6.19 8.54 -39.29 -0.34 5.86 16 35 H 0.07 1.65 7.94 -51.93 -0.41 1.24 16 36 H -0.01 -0.17 7.21 -51.93 -0.37 -0.54 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.44 7.95 -51.93 -0.41 1.03 16 43 H 0.05 0.72 6.62 -51.93 -0.34 0.38 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -28.29 344.99 -9.26 -37.55 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.19 Total: 5.43 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.02 Total: -21.38 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.14 Total: -37.83 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.36 Total: -5.51 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.29 -9.26 -37.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.869 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds