Wall clock time and date at job start Mon Mar 30 2020 08:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00138 * 2 1 4 4 H 1.09004 * 108.85392 * 329.99721 * 3 2 1 5 5 C 1.50470 * 108.87778 * 88.55379 * 3 2 1 6 6 C 1.54234 * 108.51715 * 214.93292 * 5 3 2 7 7 C 1.45541 * 112.41599 * 280.00465 * 6 5 3 8 8 C 1.54240 * 112.40008 * 61.93352 * 7 6 5 9 9 H 1.09000 * 109.62673 * 39.74042 * 8 7 6 10 10 N 1.46898 * 109.62614 * 160.12263 * 8 7 6 11 11 C 1.46898 * 111.00026 * 275.00084 * 10 8 7 12 12 C 1.53002 * 109.47377 * 184.79735 * 11 10 8 13 13 C 1.50700 * 115.54790 * 39.55593 * 12 11 10 14 14 H 1.08007 * 119.99531 * 264.85026 * 13 12 11 15 15 C 1.37876 * 120.00125 * 84.85172 * 13 12 11 16 16 N 1.31515 * 120.00170 * 353.61352 * 15 13 12 17 17 Si 1.86803 * 119.99835 * 173.61263 * 15 13 12 18 18 H 1.48499 * 109.46980 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47050 * 120.00025 * 17 15 13 20 20 H 1.48500 * 109.46969 * 239.99770 * 17 15 13 21 21 C 1.52998 * 117.49990 * 253.84681 * 12 11 10 22 22 C 1.53002 * 60.00082 * 252.50839 * 21 12 11 23 23 C 1.50470 * 108.52930 * 280.02733 * 8 7 6 24 24 C 1.54002 * 112.55028 * 94.07246 * 23 8 7 25 25 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47656 * 300.00211 * 1 2 3 27 27 H 1.09008 * 109.47094 * 60.00093 * 1 2 3 28 28 H 1.08994 * 109.63169 * 334.64737 * 5 3 2 29 29 H 1.09004 * 109.62810 * 95.22830 * 5 3 2 30 30 H 1.09003 * 108.89193 * 40.76046 * 6 5 3 31 31 H 1.09005 * 108.89535 * 159.34440 * 6 5 3 32 32 H 1.08991 * 108.90189 * 182.69092 * 7 6 5 33 33 H 1.09003 * 108.89232 * 301.28164 * 7 6 5 34 34 H 1.00897 * 111.00411 * 38.95759 * 10 8 7 35 35 H 1.08999 * 109.47479 * 304.79864 * 11 10 8 36 36 H 1.09002 * 109.47521 * 64.79454 * 11 10 8 37 37 H 0.96992 * 119.99863 * 180.02562 * 16 15 13 38 38 H 1.09004 * 117.50010 * 359.97438 * 21 12 11 39 39 H 1.08997 * 117.50047 * 145.02265 * 21 12 11 40 40 H 1.08998 * 117.49865 * 252.51067 * 22 21 12 41 41 H 1.09001 * 117.50071 * 107.48774 * 22 21 12 42 42 H 1.09007 * 108.87817 * 214.92186 * 23 8 7 43 43 H 1.08994 * 108.88146 * 333.46490 * 23 8 7 44 44 H 1.08998 * 108.87397 * 197.51884 * 24 23 8 45 45 H 1.08994 * 108.72070 * 79.25514 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3374 1.9906 -0.5158 5 6 2.1754 1.7648 1.4233 6 6 1.9348 3.2873 1.4777 7 6 3.0986 4.0488 1.0489 8 6 3.4822 3.7605 -0.4170 9 1 2.5792 3.6720 -1.0211 10 7 4.3159 4.8543 -0.9331 11 6 3.4856 5.9574 -1.4349 12 6 4.3818 7.0218 -2.0711 13 6 5.5396 6.4973 -2.8808 14 1 6.5135 6.3929 -2.4256 15 6 5.3556 6.1506 -4.2025 16 7 4.1474 6.1577 -4.7221 17 14 6.8223 5.6710 -5.2552 18 1 8.0614 5.7434 -4.4400 19 1 6.6395 4.2854 -5.7569 20 1 6.9319 6.6036 -6.4056 21 6 4.5943 8.3227 -1.2943 22 6 3.7153 8.3143 -2.5466 23 6 4.2510 2.4679 -0.4648 24 6 3.3492 1.2550 -0.7604 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8901 28 1 1.4502 1.2565 2.0587 29 1 3.1861 1.5414 1.7652 30 1 1.0931 3.5349 0.8309 31 1 1.6878 3.5693 2.5013 32 1 2.8836 5.1120 1.1549 33 1 3.9428 3.7941 1.6898 34 1 4.9623 5.1792 -0.2298 35 1 2.7879 5.5768 -2.1808 36 1 2.9287 6.3982 -0.6081 37 1 4.0180 5.9135 -5.6518 38 1 4.0952 8.4204 -0.3302 39 1 5.5716 8.7994 -1.3687 40 1 4.1145 8.7854 -3.4448 41 1 2.6383 8.4063 -2.4062 42 1 5.0128 2.5391 -1.2411 43 1 4.7410 2.3132 0.4964 44 1 3.8790 0.3449 -0.4792 45 1 3.1447 1.2237 -1.8306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718286695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:31:02 Heat of formation + Delta-G solvation = -49.639012 kcal Electronic energy + Delta-G solvation = -21537.803713 eV Core-core repulsion = 18554.780619 eV Total energy + Delta-G solvation = -2983.023094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68358 -38.85479 -37.84026 -34.85000 -33.82623 -33.26016 -30.76272 -27.65521 -27.45317 -26.44100 -24.92151 -23.93646 -22.85902 -21.68433 -20.98819 -20.26207 -17.91124 -17.72273 -16.74923 -16.60008 -16.47638 -16.04987 -15.54405 -15.40654 -14.98398 -14.91264 -14.65901 -14.25247 -14.02435 -13.66684 -13.34463 -13.12723 -12.86563 -12.84673 -12.72019 -12.64074 -12.32720 -12.11685 -11.95939 -11.88817 -11.73320 -11.63443 -11.36104 -11.25002 -11.06577 -10.68741 -10.48137 -10.29691 -9.84856 -8.85154 -7.96758 -6.00478 1.43099 1.46581 1.55733 2.52357 2.79746 3.34123 3.38655 3.58287 3.69747 3.81408 4.05471 4.15582 4.27434 4.32753 4.38981 4.44469 4.46318 4.50539 4.53337 4.57648 4.63642 4.77506 4.80197 4.82693 4.90288 4.96487 5.01941 5.03293 5.03880 5.18654 5.20413 5.26330 5.32032 5.33842 5.42417 5.46135 5.47170 5.66765 5.74303 5.92652 6.29987 6.45873 6.65994 6.89545 7.02252 7.63884 9.13327 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.005165 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.973542 B = 5419.841733 C = 6127.407608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.093 3.907 4 H 0.048 0.952 5 C -0.130 4.130 6 C -0.107 4.107 7 C -0.140 4.140 8 C 0.092 3.908 9 H 0.052 0.948 10 N -0.667 5.667 11 C 0.128 3.872 12 C 0.020 3.980 13 C -0.463 4.463 14 H 0.048 0.952 15 C 0.026 3.974 16 N -0.914 5.914 17 Si 0.939 3.061 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.287 1.287 21 C -0.190 4.190 22 C -0.168 4.168 23 C -0.098 4.098 24 C -0.107 4.107 25 H 0.099 0.901 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.337 0.663 35 H 0.033 0.967 36 H 0.010 0.990 37 H 0.252 0.748 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 -8.627 13.322 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.036 3.964 4 H 0.066 0.934 5 C -0.168 4.168 6 C -0.145 4.145 7 C -0.180 4.180 8 C -0.018 4.018 9 H 0.070 0.930 10 N -0.296 5.296 11 C -0.001 4.001 12 C 0.019 3.981 13 C -0.501 4.501 14 H 0.066 0.934 15 C -0.172 4.172 16 N -0.554 5.554 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.214 1.214 21 C -0.227 4.227 22 C -0.206 4.206 23 C -0.136 4.136 24 C -0.145 4.145 25 H 0.117 0.883 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.051 0.949 36 H 0.028 0.972 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.071 -9.105 12.518 16.627 hybrid contribution 0.026 0.554 -0.472 0.728 sum -6.045 -8.551 12.046 15.961 Atomic orbital electron populations 1.22938 0.80066 1.03668 1.00457 1.87862 1.20968 1.28800 1.95323 1.22014 0.94588 0.83706 0.96116 0.93363 1.21830 1.03467 0.95514 0.95985 1.20340 0.97768 0.94403 1.02034 1.21189 0.99807 1.00004 0.96966 1.21330 0.95110 0.91979 0.93420 0.93010 1.60322 1.18736 1.10173 1.40359 1.21126 0.93368 0.91080 0.94566 1.19080 0.96502 0.85541 0.96941 1.20408 0.94034 1.41207 0.94441 0.93363 1.25457 0.97042 0.95666 0.99046 1.70122 1.21661 1.50151 1.13418 0.85805 0.81255 0.77235 0.79041 1.19259 1.21582 1.21387 1.23062 1.00012 1.05085 0.94506 1.22393 0.96007 1.05842 0.96404 1.21234 0.97849 0.92201 1.02344 1.21825 0.94800 0.98718 0.99193 0.88266 0.92995 0.94284 0.90343 0.90514 0.92997 0.90432 0.92957 0.90837 0.84516 0.94883 0.97181 0.93942 0.89293 0.90568 0.92613 0.91263 0.92296 0.90802 0.90672 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.70 113.37 1.21 1.67 16 2 O -0.41 -10.18 10.21 -148.98 -1.52 -11.70 16 3 C 0.09 2.28 2.13 30.14 0.06 2.35 16 4 H 0.05 1.26 6.23 -2.38 -0.01 1.25 16 5 C -0.13 -2.66 5.26 30.19 0.16 -2.51 16 6 C -0.11 -2.23 5.26 28.73 0.15 -2.08 16 7 C -0.14 -3.45 4.63 28.74 0.13 -3.31 16 8 C 0.09 2.89 2.12 44.52 0.09 2.98 16 9 H 0.05 1.83 6.57 -2.39 -0.02 1.81 16 10 N -0.67 -25.92 5.42 -493.64 -2.67 -28.59 16 11 C 0.13 5.58 5.56 86.30 0.48 6.06 16 12 C 0.02 0.96 1.73 -52.93 -0.09 0.87 16 13 C -0.46 -24.97 8.15 25.60 0.21 -24.76 16 14 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 15 C 0.03 1.46 5.39 84.65 0.46 1.92 16 16 N -0.91 -53.37 12.94 21.45 0.28 -53.09 16 17 Si 0.94 44.83 29.54 68.60 2.03 46.85 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 C -0.19 -7.87 9.88 30.59 0.30 -7.57 16 22 C -0.17 -7.90 9.48 30.60 0.29 -7.61 16 23 C -0.10 -2.85 5.05 30.11 0.15 -2.69 16 24 C -0.11 -2.92 5.48 31.29 0.17 -2.75 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 0.81 7.73 -2.39 -0.02 0.79 16 27 H 0.04 0.72 8.07 -2.38 -0.02 0.70 16 28 H 0.08 1.43 7.49 -2.39 -0.02 1.42 16 29 H 0.08 1.54 6.97 -2.38 -0.02 1.53 16 30 H 0.05 1.15 7.47 -2.39 -0.02 1.13 16 31 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.05 1.36 7.27 -2.39 -0.02 1.35 16 33 H 0.07 1.63 7.47 -2.39 -0.02 1.61 16 34 H 0.34 12.24 8.54 -89.70 -0.77 11.48 16 35 H 0.03 1.65 7.94 -2.39 -0.02 1.63 16 36 H 0.01 0.40 7.21 -2.39 -0.02 0.39 16 37 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.09 3.18 8.08 -2.38 -0.02 3.16 16 39 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.06 2.02 7.95 -2.38 -0.02 2.00 16 43 H 0.07 1.83 6.62 -2.39 -0.02 1.82 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -60.58 344.99 2.07 -58.51 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.18 Total: 25.46 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 3.78 Total: -37.44 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.40 Total: -81.68 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.52 Total: -11.70 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -60.58 2.07 -58.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.872 kcal (2) G-P(sol) polarization free energy of solvation -60.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds