Wall clock time and date at job start Mon Mar 30 2020 08:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99917 * 2 1 4 4 H 1.08993 * 109.78519 * 30.47518 * 3 2 1 5 5 C 1.54246 * 109.62610 * 269.99513 * 3 2 1 6 6 C 1.45540 * 112.40226 * 160.31253 * 5 3 2 7 7 C 1.54236 * 112.41129 * 61.93587 * 6 5 3 8 8 C 1.50473 * 108.51554 * 280.00312 * 7 6 5 9 9 H 1.08998 * 108.87726 * 333.47472 * 8 7 6 10 10 N 1.46901 * 108.87483 * 214.93262 * 8 7 6 11 11 C 1.46903 * 111.00163 * 86.87998 * 10 8 7 12 12 C 1.53001 * 109.47256 * 185.16966 * 11 10 8 13 13 C 1.50700 * 115.54659 * 39.64337 * 12 11 10 14 14 H 1.07994 * 120.00114 * 265.74566 * 13 12 11 15 15 C 1.37884 * 119.99917 * 85.75359 * 13 12 11 16 16 N 1.31516 * 119.99822 * 183.95420 * 15 13 12 17 17 Si 1.86804 * 119.99789 * 3.94901 * 15 13 12 18 18 H 1.48500 * 109.46801 * 93.26036 * 17 15 13 19 19 H 1.48503 * 109.46801 * 213.25541 * 17 15 13 20 20 H 1.48498 * 109.47112 * 333.25625 * 17 15 13 21 21 C 1.52994 * 117.49947 * 253.93854 * 12 11 10 22 22 C 1.52998 * 117.49788 * 185.31453 * 12 11 10 23 23 C 1.54069 * 112.41975 * 94.20840 * 8 7 6 24 24 C 1.50473 * 109.62634 * 150.95962 * 3 2 1 25 25 H 1.09002 * 109.47066 * 60.00599 * 1 2 3 26 26 H 1.09001 * 109.47110 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47534 * 300.00432 * 1 2 3 28 28 H 1.08999 * 108.89355 * 39.56057 * 5 3 2 29 29 H 1.08996 * 108.89624 * 281.06835 * 5 3 2 30 30 H 1.09004 * 108.89137 * 301.18057 * 6 5 3 31 31 H 1.08997 * 108.89633 * 182.69436 * 6 5 3 32 32 H 1.09001 * 109.62819 * 160.29208 * 7 6 5 33 33 H 1.08999 * 109.79002 * 39.80832 * 7 6 5 34 34 H 1.00907 * 110.99547 * 210.83388 * 10 8 7 35 35 H 1.09000 * 109.46827 * 305.16827 * 11 10 8 36 36 H 1.09000 * 109.47278 * 65.16756 * 11 10 8 37 37 H 0.97003 * 119.99481 * 179.97438 * 16 15 13 38 38 H 1.09011 * 117.49740 * 0.02562 * 21 12 11 39 39 H 1.09004 * 117.50256 * 145.01794 * 21 12 11 40 40 H 1.09001 * 117.49880 * 214.97669 * 22 12 11 41 41 H 1.08998 * 117.49931 * 359.97438 * 22 12 11 42 42 H 1.08994 * 108.81655 * 79.09397 * 23 8 7 43 43 H 1.08998 * 108.81045 * 197.37443 * 23 8 7 44 44 H 1.08993 * 108.87940 * 334.63360 * 24 3 2 45 45 H 1.09000 * 108.87456 * 93.08102 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3528 2.0020 0.5201 5 6 2.2210 1.7787 -1.4529 6 6 2.3680 3.2234 -1.5498 7 6 3.6008 3.7419 -0.7815 8 6 3.2518 3.8282 0.6796 9 1 2.1757 3.9721 0.7773 10 7 3.9406 4.9860 1.2652 11 6 3.1432 6.2094 1.1052 12 6 3.9454 7.4107 1.6092 13 6 5.4142 7.3989 1.2723 14 1 6.1273 7.0022 1.9797 15 6 5.8477 7.8947 0.0609 16 7 7.1191 7.8136 -0.2658 17 14 4.6291 8.6813 -1.1163 18 1 4.5966 10.1483 -0.8877 19 1 5.0451 8.4075 -2.5153 20 1 3.2772 8.1136 -0.8816 21 6 3.5323 8.0245 2.9483 22 6 3.2393 8.7676 1.6434 23 6 3.6579 2.5612 1.4566 24 6 3.3478 1.2632 0.6880 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.3647 1.4700 -2.0524 29 1 3.1180 1.3050 -1.8517 30 1 1.4742 3.6972 -1.1439 31 1 2.4651 3.4987 -2.6000 32 1 3.8741 4.7300 -1.1517 33 1 4.4365 3.0557 -0.9185 34 1 4.1610 4.8225 2.2363 35 1 2.9013 6.3501 0.0517 36 1 2.2218 6.1204 1.6807 37 1 7.4239 8.1621 -1.1182 38 1 2.6891 7.5721 3.4705 39 1 4.3229 8.4198 3.5862 40 1 3.8373 9.6518 1.4226 41 1 2.2034 8.8045 1.3064 42 1 4.7275 2.6025 1.6619 43 1 3.1205 2.5431 2.4048 44 1 3.3583 0.4274 1.3875 45 1 4.1243 1.1043 -0.0602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718286696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:31:06 Heat of formation + Delta-G solvation = -27.575791 kcal Electronic energy + Delta-G solvation = -21644.192824 eV Core-core repulsion = 18662.126463 eV Total energy + Delta-G solvation = -2982.066361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.64100 -37.60247 -36.58849 -33.91292 -32.15127 -31.89313 -29.57852 -26.81780 -25.92763 -24.85979 -24.04057 -22.59025 -21.58646 -20.65087 -19.31693 -18.67370 -16.85004 -16.26232 -15.72812 -15.45052 -14.96597 -14.62315 -14.46780 -14.18126 -13.93168 -13.52116 -13.35732 -13.04025 -12.75115 -12.44761 -12.21517 -11.96437 -11.83054 -11.60004 -11.34070 -11.02101 -10.85570 -10.62248 -10.53771 -10.50456 -10.40586 -10.25171 -10.13179 -9.90807 -9.54645 -9.38441 -9.00390 -8.41087 -8.32099 -7.50612 -5.92396 -3.89918 3.37597 3.47098 3.51023 3.64316 4.54341 4.57149 4.62518 4.80109 5.00587 5.13395 5.14876 5.18293 5.23907 5.31040 5.34240 5.37775 5.43580 5.48375 5.53950 5.72342 5.86772 5.90818 5.99810 6.02246 6.06891 6.11861 6.18712 6.20883 6.24879 6.26462 6.32755 6.45868 6.48865 6.59062 6.63556 6.76267 6.80644 7.10820 7.13604 7.19204 7.82953 7.98550 8.22749 8.68294 9.10802 9.72361 11.20644 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024983 B = 0.005073 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.474226 B = 5518.049357 C = 5783.257095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.091 3.909 4 H 0.062 0.938 5 C -0.134 4.134 6 C -0.120 4.120 7 C -0.109 4.109 8 C 0.089 3.911 9 H 0.028 0.972 10 N -0.653 5.653 11 C 0.100 3.900 12 C 0.007 3.993 13 C -0.452 4.452 14 H 0.075 0.925 15 C 0.079 3.921 16 N -0.903 5.903 17 Si 0.876 3.124 18 H -0.285 1.285 19 H -0.298 1.298 20 H -0.260 1.260 21 C -0.188 4.188 22 C -0.203 4.203 23 C -0.117 4.117 24 C -0.114 4.114 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.336 0.664 35 H 0.062 0.938 36 H 0.001 0.999 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.764 -12.262 0.326 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.034 3.966 4 H 0.080 0.920 5 C -0.171 4.171 6 C -0.158 4.158 7 C -0.147 4.147 8 C -0.021 4.021 9 H 0.046 0.954 10 N -0.284 5.284 11 C -0.030 4.030 12 C 0.005 3.995 13 C -0.489 4.489 14 H 0.093 0.907 15 C -0.122 4.122 16 N -0.542 5.542 17 Si 0.706 3.294 18 H -0.212 1.212 19 H -0.225 1.225 20 H -0.184 1.184 21 C -0.225 4.225 22 C -0.241 4.241 23 C -0.155 4.155 24 C -0.152 4.152 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.080 0.920 36 H 0.019 0.981 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.129 -12.265 -0.372 17.254 hybrid contribution -1.606 0.674 -0.151 1.748 sum -13.735 -11.591 -0.523 17.980 Atomic orbital electron populations 1.22744 0.81595 1.02325 0.99878 1.87907 1.19262 1.28445 1.95058 1.21914 0.95303 0.83787 0.95620 0.91990 1.20949 1.02393 0.97068 0.96732 1.20463 0.99143 0.95203 1.01013 1.21428 0.96550 1.02549 0.94154 1.21361 0.95314 0.90340 0.95067 0.95409 1.60391 1.45173 1.00550 1.22238 1.21677 0.91495 0.90285 0.99516 1.19516 0.96149 0.88598 0.95196 1.20006 0.87402 1.39191 1.02340 0.90659 1.24842 0.94574 0.95579 0.97193 1.69902 1.14535 1.47050 1.22724 0.86931 0.82906 0.79559 0.80054 1.21212 1.22480 1.18417 1.22889 1.01723 1.06495 0.91370 1.22938 0.99453 0.98626 1.03054 1.22059 1.02768 0.92893 0.97796 1.21352 0.95643 0.98010 1.00159 0.94207 0.89933 0.94216 0.92459 0.91376 0.92681 0.91979 0.90250 0.91414 0.84632 0.91958 0.98148 0.93023 0.91476 0.89684 0.89593 0.91346 0.90203 0.92690 0.91112 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.79 101.05 1.09 1.37 16 2 O -0.39 -4.71 10.25 -35.23 -0.36 -5.07 16 3 C 0.09 1.08 2.27 -27.34 -0.06 1.02 16 4 H 0.06 0.74 6.64 -51.93 -0.35 0.40 16 5 C -0.13 -1.58 4.92 -29.60 -0.15 -1.72 16 6 C -0.12 -1.56 5.26 -29.60 -0.16 -1.72 16 7 C -0.11 -1.72 5.17 -27.35 -0.14 -1.86 16 8 C 0.09 1.38 2.03 -68.42 -0.14 1.24 16 9 H 0.03 0.43 6.26 -51.93 -0.32 0.10 16 10 N -0.65 -12.40 5.48 -107.47 -0.59 -12.98 16 11 C 0.10 2.02 5.25 -3.82 -0.02 2.00 16 12 C 0.01 0.15 1.17 -155.66 -0.18 -0.03 16 13 C -0.45 -12.35 8.75 -34.44 -0.30 -12.65 16 14 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 15 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 16 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 17 Si 0.88 21.96 25.12 -169.99 -4.27 17.69 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 20 H -0.26 -6.13 5.31 56.52 0.30 -5.83 16 21 C -0.19 -3.78 9.88 -26.73 -0.26 -4.04 16 22 C -0.20 -4.33 7.36 -26.73 -0.20 -4.53 16 23 C -0.12 -1.54 5.04 -25.65 -0.13 -1.67 16 24 C -0.11 -1.37 5.06 -27.47 -0.14 -1.51 16 25 H 0.04 0.33 7.74 -51.93 -0.40 -0.07 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 28 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 29 H 0.07 0.81 7.47 -51.93 -0.39 0.43 16 30 H 0.05 0.71 7.47 -51.93 -0.39 0.32 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.51 7.35 -51.93 -0.38 1.13 16 33 H 0.07 1.06 6.99 -51.93 -0.36 0.69 16 34 H 0.34 6.10 8.32 -39.29 -0.33 5.78 16 35 H 0.06 1.34 6.06 -51.93 -0.31 1.03 16 36 H 0.00 0.01 7.94 -51.93 -0.41 -0.40 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.07 1.19 8.08 -51.92 -0.42 0.77 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 40 H 0.09 1.93 7.08 -51.93 -0.37 1.57 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.82 7.97 -51.93 -0.41 0.41 16 45 H 0.07 0.87 6.64 -51.93 -0.34 0.53 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -29.78 335.76 -8.48 -38.25 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.21 Total: 5.87 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -0.88 Total: -21.94 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.19 Total: -39.87 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.36 Total: -5.07 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.27 Total: 17.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.78 -8.48 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.677 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds