Wall clock time and date at job start Mon Mar 30 2020 08:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99917 * 2 1 4 4 H 1.08993 * 109.78519 * 30.47518 * 3 2 1 5 5 C 1.54246 * 109.62610 * 269.99513 * 3 2 1 6 6 C 1.45540 * 112.40226 * 160.31253 * 5 3 2 7 7 C 1.54236 * 112.41129 * 61.93587 * 6 5 3 8 8 C 1.50473 * 108.51554 * 280.00312 * 7 6 5 9 9 H 1.08998 * 108.87726 * 333.47472 * 8 7 6 10 10 N 1.46901 * 108.87483 * 214.93262 * 8 7 6 11 11 C 1.46903 * 111.00163 * 86.87998 * 10 8 7 12 12 C 1.53001 * 109.47256 * 185.16966 * 11 10 8 13 13 C 1.50700 * 115.54659 * 39.64337 * 12 11 10 14 14 H 1.07994 * 120.00114 * 265.74566 * 13 12 11 15 15 C 1.37884 * 119.99917 * 85.75359 * 13 12 11 16 16 N 1.31516 * 119.99822 * 183.95420 * 15 13 12 17 17 Si 1.86804 * 119.99789 * 3.94901 * 15 13 12 18 18 H 1.48500 * 109.46801 * 93.26036 * 17 15 13 19 19 H 1.48503 * 109.46801 * 213.25541 * 17 15 13 20 20 H 1.48498 * 109.47112 * 333.25625 * 17 15 13 21 21 C 1.52994 * 117.49947 * 253.93854 * 12 11 10 22 22 C 1.52998 * 117.49788 * 185.31453 * 12 11 10 23 23 C 1.54069 * 112.41975 * 94.20840 * 8 7 6 24 24 C 1.50473 * 109.62634 * 150.95962 * 3 2 1 25 25 H 1.09002 * 109.47066 * 60.00599 * 1 2 3 26 26 H 1.09001 * 109.47110 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47534 * 300.00432 * 1 2 3 28 28 H 1.08999 * 108.89355 * 39.56057 * 5 3 2 29 29 H 1.08996 * 108.89624 * 281.06835 * 5 3 2 30 30 H 1.09004 * 108.89137 * 301.18057 * 6 5 3 31 31 H 1.08997 * 108.89633 * 182.69436 * 6 5 3 32 32 H 1.09001 * 109.62819 * 160.29208 * 7 6 5 33 33 H 1.08999 * 109.79002 * 39.80832 * 7 6 5 34 34 H 1.00907 * 110.99547 * 210.83388 * 10 8 7 35 35 H 1.09000 * 109.46827 * 305.16827 * 11 10 8 36 36 H 1.09000 * 109.47278 * 65.16756 * 11 10 8 37 37 H 0.97003 * 119.99481 * 179.97438 * 16 15 13 38 38 H 1.09011 * 117.49740 * 0.02562 * 21 12 11 39 39 H 1.09004 * 117.50256 * 145.01794 * 21 12 11 40 40 H 1.09001 * 117.49880 * 214.97669 * 22 12 11 41 41 H 1.08998 * 117.49931 * 359.97438 * 22 12 11 42 42 H 1.08994 * 108.81655 * 79.09397 * 23 8 7 43 43 H 1.08998 * 108.81045 * 197.37443 * 23 8 7 44 44 H 1.08993 * 108.87940 * 334.63360 * 24 3 2 45 45 H 1.09000 * 108.87456 * 93.08102 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3528 2.0020 0.5201 5 6 2.2210 1.7787 -1.4529 6 6 2.3680 3.2234 -1.5498 7 6 3.6008 3.7419 -0.7815 8 6 3.2518 3.8282 0.6796 9 1 2.1757 3.9721 0.7773 10 7 3.9406 4.9860 1.2652 11 6 3.1432 6.2094 1.1052 12 6 3.9454 7.4107 1.6092 13 6 5.4142 7.3989 1.2723 14 1 6.1273 7.0022 1.9797 15 6 5.8477 7.8947 0.0609 16 7 7.1191 7.8136 -0.2658 17 14 4.6291 8.6813 -1.1163 18 1 4.5966 10.1483 -0.8877 19 1 5.0451 8.4075 -2.5153 20 1 3.2772 8.1136 -0.8816 21 6 3.5323 8.0245 2.9483 22 6 3.2393 8.7676 1.6434 23 6 3.6579 2.5612 1.4566 24 6 3.3478 1.2632 0.6880 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.3647 1.4700 -2.0524 29 1 3.1180 1.3050 -1.8517 30 1 1.4742 3.6972 -1.1439 31 1 2.4651 3.4987 -2.6000 32 1 3.8741 4.7300 -1.1517 33 1 4.4365 3.0557 -0.9185 34 1 4.1610 4.8225 2.2363 35 1 2.9013 6.3501 0.0517 36 1 2.2218 6.1204 1.6807 37 1 7.4239 8.1621 -1.1182 38 1 2.6891 7.5721 3.4705 39 1 4.3229 8.4198 3.5862 40 1 3.8373 9.6518 1.4226 41 1 2.2034 8.8045 1.3064 42 1 4.7275 2.6025 1.6619 43 1 3.1205 2.5431 2.4048 44 1 3.3583 0.4274 1.3875 45 1 4.1243 1.1043 -0.0602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718286696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:31:06 Heat of formation + Delta-G solvation = -46.677496 kcal Electronic energy + Delta-G solvation = -21645.021136 eV Core-core repulsion = 18662.126463 eV Total energy + Delta-G solvation = -2982.894673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68518 -39.04665 -37.84407 -35.16732 -34.06228 -33.20349 -30.79289 -27.83461 -27.57411 -26.42947 -25.09746 -23.86207 -23.23602 -21.66078 -20.87068 -20.15229 -18.16494 -17.79441 -17.08198 -16.53437 -16.32718 -15.91202 -15.68573 -15.42542 -15.34074 -14.80449 -14.60526 -14.56052 -14.28572 -14.01652 -13.59126 -13.11659 -12.99731 -12.93144 -12.71408 -12.41543 -12.29334 -12.10992 -11.95466 -11.78302 -11.71644 -11.54215 -11.38285 -11.32796 -11.11991 -10.90402 -10.45043 -10.41608 -10.14777 -8.93755 -8.13746 -6.13618 1.37397 1.40795 1.52105 2.46916 2.81944 3.12320 3.24990 3.43821 3.66375 3.76141 4.04309 4.15203 4.25322 4.25484 4.31052 4.38211 4.39321 4.44172 4.50525 4.56456 4.57847 4.61371 4.68710 4.76779 4.85815 4.87923 4.93186 5.01472 5.02901 5.09289 5.12385 5.19041 5.21596 5.27275 5.35233 5.39566 5.44425 5.51487 5.60289 5.83952 6.31822 6.40267 6.55663 6.80482 6.90936 7.51860 9.03190 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024983 B = 0.005073 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.474226 B = 5518.049357 C = 5783.257095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.094 3.906 4 H 0.066 0.934 5 C -0.130 4.130 6 C -0.110 4.110 7 C -0.108 4.108 8 C 0.093 3.907 9 H 0.040 0.960 10 N -0.679 5.679 11 C 0.110 3.890 12 C -0.023 4.023 13 C -0.438 4.438 14 H 0.029 0.971 15 C 0.021 3.979 16 N -0.957 5.957 17 Si 0.933 3.067 18 H -0.281 1.281 19 H -0.307 1.307 20 H -0.232 1.232 21 C -0.167 4.167 22 C -0.200 4.200 23 C -0.109 4.109 24 C -0.109 4.109 25 H 0.046 0.954 26 H 0.098 0.902 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.338 0.662 35 H 0.049 0.951 36 H 0.029 0.971 37 H 0.258 0.742 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.178 -13.003 0.654 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.037 3.963 4 H 0.084 0.916 5 C -0.168 4.168 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.016 4.016 9 H 0.058 0.942 10 N -0.309 5.309 11 C -0.019 4.019 12 C -0.024 4.024 13 C -0.476 4.476 14 H 0.048 0.952 15 C -0.175 4.175 16 N -0.599 5.599 17 Si 0.759 3.241 18 H -0.207 1.207 19 H -0.235 1.235 20 H -0.155 1.155 21 C -0.204 4.204 22 C -0.238 4.238 23 C -0.147 4.147 24 C -0.147 4.147 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.156 0.844 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.578 -13.014 -0.021 20.299 hybrid contribution -0.488 0.852 -0.155 0.994 sum -16.065 -12.162 -0.176 20.151 Atomic orbital electron populations 1.22951 0.79999 1.03680 1.00586 1.87884 1.21054 1.28321 1.95142 1.21831 0.95022 0.84054 0.95386 0.91635 1.20891 1.02784 0.95990 0.97135 1.20369 0.97726 0.96011 1.00722 1.21389 0.97892 1.00403 0.94986 1.21391 0.95561 0.90034 0.94620 0.94228 1.60315 1.46411 1.01562 1.22654 1.21473 0.92083 0.89513 0.98869 1.19482 0.93829 0.90800 0.98261 1.20134 0.89648 1.36975 1.00877 0.95239 1.25603 0.95982 0.96673 0.99197 1.70061 1.16861 1.49552 1.23409 0.86012 0.82017 0.78790 0.77233 1.20712 1.23460 1.15509 1.22917 1.02234 1.04759 0.90460 1.22972 1.00398 0.96740 1.03681 1.21964 1.02107 0.92360 0.98267 1.21296 0.95948 0.97419 1.00079 0.93486 0.88391 0.93483 0.91104 0.91825 0.91993 0.91662 0.93922 0.92069 0.84398 0.93297 0.95355 0.93354 0.87941 0.90651 0.91219 0.88473 0.91523 0.91201 0.90449 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.79 113.37 1.22 1.59 16 2 O -0.40 -8.78 10.25 -148.98 -1.53 -10.31 16 3 C 0.09 2.02 2.27 30.20 0.07 2.09 16 4 H 0.07 1.36 6.64 -2.39 -0.02 1.34 16 5 C -0.13 -2.79 4.92 28.74 0.14 -2.65 16 6 C -0.11 -2.67 5.26 28.73 0.15 -2.52 16 7 C -0.11 -3.38 5.17 30.20 0.16 -3.22 16 8 C 0.09 2.75 2.03 44.46 0.09 2.84 16 9 H 0.04 1.09 6.26 -2.39 -0.01 1.08 16 10 N -0.68 -25.25 5.48 -493.93 -2.70 -27.95 16 11 C 0.11 4.22 5.25 86.30 0.45 4.68 16 12 C -0.02 -0.99 1.17 -52.93 -0.06 -1.05 16 13 C -0.44 -24.50 8.75 25.60 0.22 -24.28 16 14 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 15 C 0.02 1.22 5.47 84.66 0.46 1.68 16 16 N -0.96 -61.10 13.96 21.45 0.30 -60.80 16 17 Si 0.93 45.59 25.12 68.60 1.72 47.31 16 18 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 19 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 20 H -0.23 -10.21 5.31 99.48 0.53 -9.68 16 21 C -0.17 -6.25 9.88 30.59 0.30 -5.95 16 22 C -0.20 -7.95 7.36 30.59 0.23 -7.73 16 23 C -0.11 -2.71 5.04 31.30 0.16 -2.55 16 24 C -0.11 -2.46 5.06 30.12 0.15 -2.31 16 25 H 0.05 0.64 7.74 -2.39 -0.02 0.62 16 26 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 0.64 8.09 -2.39 -0.02 0.62 16 28 H 0.07 1.35 7.68 -2.39 -0.02 1.33 16 29 H 0.06 1.43 7.47 -2.39 -0.02 1.41 16 30 H 0.06 1.42 7.47 -2.38 -0.02 1.41 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.64 7.35 -2.39 -0.02 1.62 16 33 H 0.06 1.93 6.99 -2.39 -0.02 1.92 16 34 H 0.34 12.05 8.32 -89.69 -0.75 11.31 16 35 H 0.05 1.99 6.06 -2.39 -0.01 1.98 16 36 H 0.03 0.94 7.94 -2.39 -0.02 0.92 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.10 3.15 8.08 -2.38 -0.02 3.13 16 39 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 40 H 0.07 3.00 7.08 -2.39 -0.02 2.98 16 41 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.65 7.97 -2.39 -0.02 1.63 16 45 H 0.06 1.53 6.64 -2.39 -0.02 1.51 16 Total: -1.00 -65.93 335.76 1.56 -64.36 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.02 Total: 26.77 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 3.75 Total: -39.38 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -2.40 Total: -88.75 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.53 Total: -10.31 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.72 Total: 47.31 kcal Total: -65.93 1.56 -64.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.687 kcal (2) G-P(sol) polarization free energy of solvation -65.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds