Wall clock time and date at job start Mon Mar 30 2020 08:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00250 * 2 1 4 4 H 1.08999 * 109.78084 * 330.47958 * 3 2 1 5 5 C 1.50466 * 109.63074 * 90.96093 * 3 2 1 6 6 C 1.54070 * 112.50058 * 213.86151 * 5 3 2 7 7 C 1.54064 * 112.81506 * 318.28375 * 6 5 3 8 8 C 1.50468 * 112.49843 * 318.28214 * 7 6 5 9 9 H 1.08999 * 109.79240 * 334.35140 * 8 7 6 10 10 N 1.46901 * 109.63230 * 213.86144 * 8 7 6 11 11 C 1.46902 * 110.99785 * 82.25442 * 10 8 7 12 12 C 1.52998 * 109.47122 * 184.43430 * 11 10 8 13 13 C 1.50697 * 115.54881 * 40.07490 * 12 11 10 14 14 H 1.08008 * 119.99682 * 264.63771 * 13 12 11 15 15 C 1.37869 * 120.00386 * 84.63835 * 13 12 11 16 16 N 1.31510 * 120.00391 * 184.76537 * 15 13 12 17 17 Si 1.86804 * 119.99750 * 4.76150 * 15 13 12 18 18 H 1.48498 * 109.46990 * 94.64535 * 17 15 13 19 19 H 1.48504 * 109.47121 * 214.63965 * 17 15 13 20 20 H 1.48500 * 109.47013 * 334.64391 * 17 15 13 21 21 C 1.53002 * 117.49830 * 254.36930 * 12 11 10 22 22 C 1.52994 * 117.49754 * 185.74425 * 12 11 10 23 23 C 1.54243 * 108.52134 * 94.15427 * 8 7 6 24 24 C 1.45544 * 112.40542 * 280.01078 * 23 8 7 25 25 H 1.08998 * 109.47225 * 300.01083 * 1 2 3 26 26 H 1.09007 * 109.46512 * 60.00305 * 1 2 3 27 27 H 1.08993 * 109.47126 * 180.02562 * 1 2 3 28 28 H 1.09002 * 108.87741 * 93.08735 * 5 3 2 29 29 H 1.08998 * 108.87891 * 334.63741 * 5 3 2 30 30 H 1.09003 * 108.81406 * 197.42073 * 6 5 3 31 31 H 1.08999 * 108.81443 * 79.14410 * 6 5 3 32 32 H 1.09000 * 108.88049 * 197.50464 * 7 6 5 33 33 H 1.09001 * 108.87754 * 79.06457 * 7 6 5 34 34 H 1.00901 * 110.99999 * 318.30273 * 10 8 7 35 35 H 1.08995 * 109.46951 * 304.43426 * 11 10 8 36 36 H 1.08997 * 109.46650 * 64.43283 * 11 10 8 37 37 H 0.97005 * 120.00216 * 179.97438 * 16 15 13 38 38 H 1.09003 * 117.49794 * 359.97438 * 21 12 11 39 39 H 1.08998 * 117.50081 * 145.01975 * 21 12 11 40 40 H 1.09005 * 117.49596 * 214.97422 * 22 12 11 41 41 H 1.08998 * 117.50408 * 359.97438 * 22 12 11 42 42 H 1.09000 * 108.89751 * 159.25399 * 23 8 7 43 43 H 1.09006 * 108.81493 * 40.70668 * 23 8 7 44 44 H 1.09002 * 108.89623 * 182.68694 * 24 23 8 45 45 H 1.09000 * 108.89734 * 301.17560 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0054 -0.5054 5 6 2.2377 1.7575 1.4170 6 6 2.0491 3.2770 1.5885 7 6 2.6647 4.0895 0.4334 8 6 4.0080 3.5606 0.0093 9 1 4.4776 3.0361 0.8414 10 7 4.8646 4.6749 -0.4181 11 6 5.4908 5.3308 0.7377 12 6 6.2844 6.5501 0.2640 13 6 5.6315 7.3699 -0.8188 14 1 5.8832 7.1949 -1.8545 15 6 4.7129 8.3432 -0.4876 16 7 4.0739 8.9941 -1.4349 17 14 4.3760 8.7373 1.3070 18 1 5.2224 9.8819 1.7298 19 1 2.9438 9.0921 1.4755 20 1 4.6938 7.5514 2.1424 21 6 7.8099 6.4346 0.2406 22 6 7.1239 7.2942 1.3043 23 6 3.8013 2.5853 -1.1676 24 6 3.3705 1.2669 -0.7263 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.2527 1.4925 1.7132 29 1 1.5352 1.2392 2.0696 30 1 2.5163 3.5859 2.5237 31 1 0.9825 3.4950 1.6423 32 1 2.7783 5.1256 0.7523 33 1 1.9876 4.0576 -0.4202 34 1 4.3448 5.3385 -0.9726 35 1 4.7181 5.6495 1.4372 36 1 6.1627 4.6299 1.2330 37 1 3.4273 9.6786 -1.2018 38 1 8.2481 5.4900 0.5630 39 1 8.3415 6.9515 -0.5583 40 1 7.2044 8.3767 1.2052 41 1 7.1106 6.9154 2.3263 42 1 4.7399 2.4858 -1.7127 43 1 3.0464 2.9974 -1.8373 44 1 3.2885 0.6133 -1.5948 45 1 4.1208 0.8586 -0.0492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718286697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:31:10 Heat of formation + Delta-G solvation = -33.832283 kcal Electronic energy + Delta-G solvation = -21650.976853 eV Core-core repulsion = 18668.639190 eV Total energy + Delta-G solvation = -2982.337663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.64330 -37.61653 -36.57764 -33.53771 -32.41214 -32.09974 -29.55078 -26.79404 -25.91615 -24.87458 -23.91488 -22.66481 -21.54190 -20.54968 -19.43922 -18.79274 -16.84748 -16.19847 -15.53181 -15.45478 -14.89121 -14.72568 -14.52655 -14.26346 -14.03208 -13.50526 -13.23568 -12.98217 -12.70897 -12.47858 -12.12646 -12.01902 -11.77890 -11.68856 -11.25697 -11.05471 -10.93708 -10.80678 -10.62857 -10.48114 -10.39237 -10.27727 -10.06546 -9.90773 -9.57711 -9.38790 -9.03319 -8.60770 -8.38685 -7.47252 -6.11976 -4.13113 3.26138 3.36455 3.42239 3.65608 4.41061 4.59710 4.68072 4.89832 5.07950 5.11990 5.15698 5.18494 5.23275 5.24812 5.30233 5.34827 5.42898 5.49332 5.58554 5.79775 5.85168 5.88305 5.95879 6.05577 6.10248 6.16131 6.22092 6.26110 6.27272 6.38604 6.40958 6.49270 6.51061 6.55513 6.62250 6.69196 6.81545 7.09522 7.16793 7.19676 7.77097 7.98160 8.37922 8.56733 8.95737 9.52105 10.99289 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.005049 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.956560 B = 5543.941342 C = 5861.511777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.089 3.911 4 H 0.064 0.936 5 C -0.139 4.139 6 C -0.111 4.111 7 C -0.155 4.155 8 C 0.089 3.911 9 H 0.071 0.929 10 N -0.672 5.672 11 C 0.098 3.902 12 C 0.007 3.993 13 C -0.479 4.479 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.897 5.897 17 Si 0.871 3.129 18 H -0.281 1.281 19 H -0.297 1.297 20 H -0.254 1.254 21 C -0.175 4.175 22 C -0.207 4.207 23 C -0.109 4.109 24 C -0.107 4.107 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.361 0.639 35 H 0.020 0.980 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 -14.419 4.952 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.032 3.968 4 H 0.082 0.918 5 C -0.177 4.177 6 C -0.149 4.149 7 C -0.194 4.194 8 C -0.022 4.022 9 H 0.089 0.911 10 N -0.305 5.305 11 C -0.031 4.031 12 C 0.005 3.995 13 C -0.516 4.516 14 H 0.098 0.902 15 C -0.125 4.125 16 N -0.534 5.534 17 Si 0.699 3.301 18 H -0.207 1.207 19 H -0.224 1.224 20 H -0.179 1.179 21 C -0.213 4.213 22 C -0.245 4.245 23 C -0.147 4.147 24 C -0.145 4.145 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.184 0.816 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.979 -14.819 4.762 16.343 hybrid contribution -1.279 1.221 1.500 2.319 sum -6.258 -13.599 6.263 16.227 Atomic orbital electron populations 1.22744 0.81581 1.02291 0.99913 1.87891 1.19220 1.28529 1.95133 1.21943 0.95386 0.83767 0.95706 0.91776 1.21880 1.02780 0.95960 0.97075 1.21821 1.00349 0.93802 0.98964 1.22255 0.98638 1.00147 0.98336 1.21278 0.91009 0.93550 0.96368 0.91106 1.60563 1.35369 1.13419 1.21140 1.21550 0.96175 0.94292 0.91089 1.19417 0.89190 0.94538 0.96318 1.20276 1.22484 1.16001 0.92880 0.90176 1.24973 0.95170 0.95595 0.96797 1.69909 1.26389 1.24803 1.32350 0.86976 0.76587 0.79629 0.86877 1.20679 1.22364 1.17855 1.22795 0.97898 0.99566 1.00998 1.22969 1.09386 0.98263 0.93862 1.20419 1.02234 0.93834 0.98214 1.20478 0.94932 0.98397 1.00680 0.94280 0.94118 0.89965 0.91340 0.91941 0.92166 0.92685 0.91533 0.92063 0.81561 0.96231 0.93616 0.92698 0.91090 0.89884 0.89835 0.91313 0.90271 0.92391 0.91435 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.76 101.05 1.09 1.38 16 2 O -0.39 -4.77 10.25 -35.23 -0.36 -5.13 16 3 C 0.09 1.07 2.28 -27.35 -0.06 1.01 16 4 H 0.06 0.77 6.63 -51.93 -0.34 0.43 16 5 C -0.14 -1.64 5.05 -27.44 -0.14 -1.78 16 6 C -0.11 -1.41 5.86 -25.62 -0.15 -1.56 16 7 C -0.15 -2.33 4.69 -27.44 -0.13 -2.45 16 8 C 0.09 1.38 2.13 -68.33 -0.15 1.24 16 9 H 0.07 1.09 6.77 -51.93 -0.35 0.74 16 10 N -0.67 -12.96 6.11 -107.38 -0.66 -13.61 16 11 C 0.10 2.01 5.36 -3.82 -0.02 1.99 16 12 C 0.01 0.15 1.19 -155.66 -0.18 -0.04 16 13 C -0.48 -12.76 7.86 -34.44 -0.27 -13.03 16 14 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 15 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -26.35 13.96 55.43 0.77 -25.57 16 17 Si 0.87 21.17 25.19 -169.99 -4.28 16.88 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.25 -5.87 5.23 56.52 0.30 -5.57 16 21 C -0.18 -3.63 9.88 -26.73 -0.26 -3.89 16 22 C -0.21 -4.42 7.34 -26.73 -0.20 -4.62 16 23 C -0.11 -1.50 4.90 -29.60 -0.15 -1.65 16 24 C -0.11 -1.31 4.93 -29.60 -0.15 -1.45 16 25 H 0.04 0.33 7.96 -51.93 -0.41 -0.08 16 26 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.82 6.64 -51.93 -0.34 0.48 16 29 H 0.06 0.70 7.72 -51.93 -0.40 0.29 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.17 6.99 -51.93 -0.36 0.81 16 33 H 0.06 0.89 6.63 -51.93 -0.34 0.55 16 34 H 0.36 7.83 7.08 -39.29 -0.28 7.55 16 35 H 0.02 0.42 5.70 -51.93 -0.30 0.12 16 36 H 0.05 0.87 7.95 -51.93 -0.41 0.46 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.08 1.87 7.15 -51.93 -0.37 1.50 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 43 H 0.06 0.80 7.46 -51.93 -0.39 0.41 16 44 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 45 H 0.06 0.80 7.47 -51.93 -0.39 0.41 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -28.07 334.32 -8.51 -36.58 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.16 Total: 8.65 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -0.86 Total: -22.83 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.12 Total: -39.18 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.36 Total: -5.13 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.28 Total: 16.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.07 -8.51 -36.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.747 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds