Wall clock time and date at job start Mon Mar 30 2020 08:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00250 * 2 1 4 4 H 1.08999 * 109.78084 * 330.47958 * 3 2 1 5 5 C 1.50466 * 109.63074 * 90.96093 * 3 2 1 6 6 C 1.54070 * 112.50058 * 213.86151 * 5 3 2 7 7 C 1.54064 * 112.81506 * 318.28375 * 6 5 3 8 8 C 1.50468 * 112.49843 * 318.28214 * 7 6 5 9 9 H 1.08999 * 109.79240 * 334.35140 * 8 7 6 10 10 N 1.46901 * 109.63230 * 213.86144 * 8 7 6 11 11 C 1.46902 * 110.99785 * 82.25442 * 10 8 7 12 12 C 1.52998 * 109.47122 * 184.43430 * 11 10 8 13 13 C 1.50697 * 115.54881 * 40.07490 * 12 11 10 14 14 H 1.08008 * 119.99682 * 264.63771 * 13 12 11 15 15 C 1.37869 * 120.00386 * 84.63835 * 13 12 11 16 16 N 1.31510 * 120.00391 * 184.76537 * 15 13 12 17 17 Si 1.86804 * 119.99750 * 4.76150 * 15 13 12 18 18 H 1.48498 * 109.46990 * 94.64535 * 17 15 13 19 19 H 1.48504 * 109.47121 * 214.63965 * 17 15 13 20 20 H 1.48500 * 109.47013 * 334.64391 * 17 15 13 21 21 C 1.53002 * 117.49830 * 254.36930 * 12 11 10 22 22 C 1.52994 * 117.49754 * 185.74425 * 12 11 10 23 23 C 1.54243 * 108.52134 * 94.15427 * 8 7 6 24 24 C 1.45544 * 112.40542 * 280.01078 * 23 8 7 25 25 H 1.08998 * 109.47225 * 300.01083 * 1 2 3 26 26 H 1.09007 * 109.46512 * 60.00305 * 1 2 3 27 27 H 1.08993 * 109.47126 * 180.02562 * 1 2 3 28 28 H 1.09002 * 108.87741 * 93.08735 * 5 3 2 29 29 H 1.08998 * 108.87891 * 334.63741 * 5 3 2 30 30 H 1.09003 * 108.81406 * 197.42073 * 6 5 3 31 31 H 1.08999 * 108.81443 * 79.14410 * 6 5 3 32 32 H 1.09000 * 108.88049 * 197.50464 * 7 6 5 33 33 H 1.09001 * 108.87754 * 79.06457 * 7 6 5 34 34 H 1.00901 * 110.99999 * 318.30273 * 10 8 7 35 35 H 1.08995 * 109.46951 * 304.43426 * 11 10 8 36 36 H 1.08997 * 109.46650 * 64.43283 * 11 10 8 37 37 H 0.97005 * 120.00216 * 179.97438 * 16 15 13 38 38 H 1.09003 * 117.49794 * 359.97438 * 21 12 11 39 39 H 1.08998 * 117.50081 * 145.01975 * 21 12 11 40 40 H 1.09005 * 117.49596 * 214.97422 * 22 12 11 41 41 H 1.08998 * 117.50408 * 359.97438 * 22 12 11 42 42 H 1.09000 * 108.89751 * 159.25399 * 23 8 7 43 43 H 1.09006 * 108.81493 * 40.70668 * 23 8 7 44 44 H 1.09002 * 108.89623 * 182.68694 * 24 23 8 45 45 H 1.09000 * 108.89734 * 301.17560 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0054 -0.5054 5 6 2.2377 1.7575 1.4170 6 6 2.0491 3.2770 1.5885 7 6 2.6647 4.0895 0.4334 8 6 4.0080 3.5606 0.0093 9 1 4.4776 3.0361 0.8414 10 7 4.8646 4.6749 -0.4181 11 6 5.4908 5.3308 0.7377 12 6 6.2844 6.5501 0.2640 13 6 5.6315 7.3699 -0.8188 14 1 5.8832 7.1949 -1.8545 15 6 4.7129 8.3432 -0.4876 16 7 4.0739 8.9941 -1.4349 17 14 4.3760 8.7373 1.3070 18 1 5.2224 9.8819 1.7298 19 1 2.9438 9.0921 1.4755 20 1 4.6938 7.5514 2.1424 21 6 7.8099 6.4346 0.2406 22 6 7.1239 7.2942 1.3043 23 6 3.8013 2.5853 -1.1676 24 6 3.3705 1.2669 -0.7263 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.2527 1.4925 1.7132 29 1 1.5352 1.2392 2.0696 30 1 2.5163 3.5859 2.5237 31 1 0.9825 3.4950 1.6423 32 1 2.7783 5.1256 0.7523 33 1 1.9876 4.0576 -0.4202 34 1 4.3448 5.3385 -0.9726 35 1 4.7181 5.6495 1.4372 36 1 6.1627 4.6299 1.2330 37 1 3.4273 9.6786 -1.2018 38 1 8.2481 5.4900 0.5630 39 1 8.3415 6.9515 -0.5583 40 1 7.2044 8.3767 1.2052 41 1 7.1106 6.9154 2.3263 42 1 4.7399 2.4858 -1.7127 43 1 3.0464 2.9974 -1.8373 44 1 3.2885 0.6133 -1.5948 45 1 4.1208 0.8586 -0.0492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718286697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:31:09 Heat of formation + Delta-G solvation = -51.236959 kcal Electronic energy + Delta-G solvation = -21651.731576 eV Core-core repulsion = 18668.639190 eV Total energy + Delta-G solvation = -2983.092386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71376 -39.05923 -37.86992 -34.82147 -34.20842 -33.46588 -30.76870 -27.89821 -27.51437 -26.40475 -24.93291 -23.96262 -23.22503 -21.67621 -20.81757 -20.35710 -18.15502 -17.76756 -16.81954 -16.55426 -16.42730 -15.94252 -15.86155 -15.45297 -15.21592 -15.04102 -14.75056 -14.31429 -14.13007 -13.95095 -13.42484 -13.17109 -13.09258 -12.89674 -12.84775 -12.62790 -12.28867 -12.06662 -11.88267 -11.87213 -11.78058 -11.54809 -11.40986 -11.26291 -11.03935 -10.97702 -10.53036 -10.46432 -10.20036 -8.99490 -8.26027 -6.29734 1.32300 1.37242 1.48817 2.37437 2.80607 3.06330 3.18908 3.52283 3.68605 3.84882 4.03649 4.13136 4.17496 4.24067 4.24531 4.39490 4.42978 4.48792 4.52250 4.55506 4.57591 4.66026 4.74731 4.81583 4.87194 4.89655 4.90533 4.94390 5.03062 5.06688 5.14032 5.19708 5.24926 5.30769 5.36076 5.38738 5.44038 5.46576 5.53129 5.77626 6.32212 6.35283 6.53775 6.71307 6.82561 7.38006 8.88973 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.005049 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.956560 B = 5543.941342 C = 5861.511777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.091 3.909 4 H 0.061 0.939 5 C -0.133 4.133 6 C -0.105 4.105 7 C -0.150 4.150 8 C 0.090 3.910 9 H 0.079 0.921 10 N -0.681 5.681 11 C 0.107 3.893 12 C -0.020 4.020 13 C -0.468 4.468 14 H 0.034 0.966 15 C 0.028 3.972 16 N -0.945 5.945 17 Si 0.926 3.074 18 H -0.279 1.279 19 H -0.302 1.302 20 H -0.230 1.230 21 C -0.163 4.163 22 C -0.200 4.200 23 C -0.099 4.099 24 C -0.103 4.103 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.343 0.657 35 H 0.013 0.987 36 H 0.067 0.933 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 -16.343 7.179 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.034 3.966 4 H 0.080 0.920 5 C -0.171 4.171 6 C -0.143 4.143 7 C -0.189 4.189 8 C -0.020 4.020 9 H 0.097 0.903 10 N -0.312 5.312 11 C -0.023 4.023 12 C -0.021 4.021 13 C -0.506 4.506 14 H 0.053 0.947 15 C -0.170 4.170 16 N -0.586 5.586 17 Si 0.752 3.248 18 H -0.205 1.205 19 H -0.229 1.229 20 H -0.153 1.153 21 C -0.200 4.200 22 C -0.238 4.238 23 C -0.137 4.137 24 C -0.141 4.141 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.164 0.836 35 H 0.031 0.969 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.952 -16.778 7.005 18.844 hybrid contribution -1.258 1.778 0.688 2.285 sum -6.211 -15.000 7.693 17.965 Atomic orbital electron populations 1.22942 0.80077 1.03665 1.00483 1.87863 1.20903 1.28384 1.95228 1.21868 0.95070 0.83922 0.95736 0.92047 1.21819 1.03092 0.95064 0.97122 1.21765 1.00735 0.94125 0.97697 1.22168 0.98522 0.98921 0.99315 1.21360 0.90797 0.92555 0.97258 0.90267 1.60585 1.36203 1.13459 1.20942 1.21457 0.95997 0.93670 0.91164 1.19422 0.90646 0.95587 0.96485 1.20318 1.22078 1.16065 0.92127 0.94740 1.25656 0.95165 0.95622 1.00558 1.70046 1.27818 1.26113 1.34576 0.86085 0.75981 0.80129 0.82559 1.20520 1.22924 1.15285 1.22835 0.96127 1.00597 1.00395 1.22997 1.08111 0.97625 0.95073 1.20319 1.01756 0.94293 0.97350 1.20401 0.95397 0.97213 1.01084 0.93538 0.93722 0.88289 0.91350 0.90871 0.91980 0.91681 0.94323 0.92154 0.83630 0.96946 0.91486 0.92836 0.88151 0.90917 0.91201 0.88505 0.91067 0.92898 0.90907 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.76 113.37 1.22 1.61 16 2 O -0.40 -8.99 10.25 -148.98 -1.53 -10.51 16 3 C 0.09 2.00 2.28 30.19 0.07 2.07 16 4 H 0.06 1.38 6.63 -2.39 -0.02 1.36 16 5 C -0.13 -2.79 5.05 30.14 0.15 -2.64 16 6 C -0.10 -2.44 5.86 31.32 0.18 -2.25 16 7 C -0.15 -4.39 4.69 30.13 0.14 -4.25 16 8 C 0.09 2.71 2.13 44.52 0.09 2.81 16 9 H 0.08 2.26 6.77 -2.39 -0.02 2.25 16 10 N -0.68 -26.00 6.11 -493.64 -3.02 -29.02 16 11 C 0.11 4.17 5.36 86.30 0.46 4.63 16 12 C -0.02 -0.90 1.19 -52.93 -0.06 -0.97 16 13 C -0.47 -25.53 7.86 25.60 0.20 -25.33 16 14 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 15 C 0.03 1.54 5.47 84.65 0.46 2.01 16 16 N -0.95 -57.55 13.96 21.44 0.30 -57.25 16 17 Si 0.93 43.63 25.19 68.60 1.73 45.35 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 20 H -0.23 -9.84 5.23 99.48 0.52 -9.32 16 21 C -0.16 -6.37 9.88 30.60 0.30 -6.06 16 22 C -0.20 -8.03 7.34 30.59 0.22 -7.81 16 23 C -0.10 -2.64 4.90 28.74 0.14 -2.50 16 24 C -0.10 -2.34 4.93 28.74 0.14 -2.20 16 25 H 0.05 0.68 7.96 -2.39 -0.02 0.66 16 26 H 0.04 0.68 8.09 -2.38 -0.02 0.66 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.45 6.64 -2.39 -0.02 1.43 16 29 H 0.07 1.40 7.72 -2.39 -0.02 1.39 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.34 6.99 -2.39 -0.02 1.33 16 33 H 0.06 1.74 6.63 -2.39 -0.02 1.72 16 34 H 0.34 15.28 7.08 -89.69 -0.64 14.65 16 35 H 0.01 0.51 5.70 -2.39 -0.01 0.49 16 36 H 0.07 2.34 7.95 -2.39 -0.02 2.32 16 37 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 38 H 0.10 3.35 8.09 -2.39 -0.02 3.34 16 39 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.07 2.99 7.15 -2.38 -0.02 2.98 16 41 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 43 H 0.05 1.45 7.46 -2.38 -0.02 1.43 16 44 H 0.07 1.59 8.13 -2.39 -0.02 1.57 16 45 H 0.07 1.54 7.47 -2.39 -0.02 1.52 16 Total: -1.00 -61.07 334.32 1.35 -59.73 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.13 Total: 32.58 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 3.73 Total: -40.87 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.72 Total: -86.27 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -1.53 Total: -10.51 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.73 Total: 45.35 kcal Total: -61.07 1.35 -59.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718286697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.488 kcal (2) G-P(sol) polarization free energy of solvation -61.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds