Wall clock time and date at job start Mon Mar 30 2020 08:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 108.76816 * 2 1 4 4 C 1.54072 * 108.87766 * 241.49305 * 2 1 3 5 5 C 1.53812 * 112.88596 * 281.09031 * 4 2 1 6 6 C 1.50476 * 112.64484 * 41.42468 * 5 4 2 7 7 C 1.54241 * 108.67845 * 266.11066 * 6 5 4 8 8 C 1.45541 * 112.41160 * 79.88907 * 7 6 5 9 9 C 1.50464 * 108.88241 * 118.51320 * 2 1 3 10 10 H 1.09002 * 109.78984 * 146.42829 * 9 2 1 11 11 N 1.46903 * 109.63079 * 266.91820 * 9 2 1 12 12 C 1.46899 * 110.99838 * 193.21178 * 11 9 2 13 13 C 1.52999 * 109.46747 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47098 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47449 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47475 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99880 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99893 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00197 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46683 * 89.99943 * 20 18 16 22 22 H 1.48495 * 109.46956 * 209.99935 * 20 18 16 23 23 H 1.48493 * 109.47052 * 330.00117 * 20 18 16 24 24 H 1.09003 * 109.46877 * 313.66049 * 1 2 3 25 25 H 1.08994 * 109.47536 * 73.66058 * 1 2 3 26 26 H 1.09003 * 109.47110 * 193.66169 * 1 2 3 27 27 H 1.09005 * 109.46645 * 172.48168 * 3 2 1 28 28 H 1.08999 * 109.47317 * 292.47922 * 3 2 1 29 29 H 1.08998 * 109.47114 * 52.48567 * 3 2 1 30 30 H 1.09005 * 108.81213 * 41.79529 * 4 2 1 31 31 H 1.08999 * 108.81750 * 160.18549 * 4 2 1 32 32 H 1.08997 * 108.67503 * 280.69370 * 5 4 2 33 33 H 1.09005 * 108.93372 * 162.33182 * 5 4 2 34 34 H 1.08996 * 109.63053 * 146.30336 * 6 5 4 35 35 H 1.09004 * 109.62926 * 25.91118 * 6 5 4 36 36 H 1.09001 * 108.89540 * 200.64073 * 7 6 5 37 37 H 1.09007 * 108.89797 * 319.22837 * 7 6 5 38 38 H 1.09003 * 108.89467 * 58.81519 * 8 7 6 39 39 H 1.08997 * 108.90199 * 177.40633 * 8 7 6 40 40 H 1.00893 * 110.99573 * 317.16642 * 11 9 2 41 41 H 1.09003 * 109.47266 * 299.99647 * 12 11 9 42 42 H 1.08994 * 109.47267 * 60.00049 * 12 11 9 43 43 H 1.09002 * 109.46994 * 299.99247 * 13 12 11 44 44 H 1.08996 * 109.47774 * 59.99688 * 13 12 11 45 45 H 1.09003 * 109.47015 * 299.99571 * 14 13 12 46 46 H 1.09000 * 109.47595 * 59.99782 * 14 13 12 47 47 H 1.09003 * 109.46744 * 299.99838 * 15 14 13 48 48 H 1.09002 * 109.47280 * 59.99158 * 15 14 13 49 49 H 0.96993 * 119.99843 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0223 1.4487 0.0000 4 6 2.0285 -0.6958 -1.2811 5 6 1.9641 -2.2300 -1.1923 6 6 0.7026 -2.7198 -0.5344 7 6 0.9778 -2.9267 0.9691 8 6 0.9385 -1.6789 1.7173 9 6 2.0169 -0.6796 1.2510 10 1 2.9449 -1.2126 1.0441 11 7 2.2470 0.3230 2.2997 12 6 3.0098 -0.2494 3.4170 13 6 3.2285 0.8220 4.4871 14 6 4.0235 0.2260 5.6506 15 6 4.2429 1.2976 6.7204 16 6 5.0253 0.7105 7.8666 17 1 5.3348 -0.3238 7.8355 18 6 5.3461 1.4935 8.9552 19 7 4.9696 2.7531 8.9930 20 14 6.3154 0.7654 10.3764 21 1 7.7683 0.9487 10.1299 22 1 5.9367 1.4525 11.6372 23 1 6.0118 -0.6835 10.4917 24 1 -0.3633 0.7095 0.7435 25 1 -0.3634 0.2891 -0.9861 26 1 -0.3633 -0.9986 0.2427 27 1 3.1039 1.4648 0.1345 28 1 1.7671 1.9192 -0.9496 29 1 1.5466 1.9940 0.8151 30 1 1.4143 -0.3690 -2.1203 31 1 3.0607 -0.3973 -1.4644 32 1 2.8210 -2.5826 -0.6183 33 1 2.0211 -2.6452 -2.1985 34 1 0.3980 -3.6647 -0.9843 35 1 -0.0884 -1.9810 -0.6635 36 1 0.2278 -3.6054 1.3752 37 1 1.9630 -3.3776 1.0889 38 1 -0.0435 -1.2227 1.5914 39 1 1.0936 -1.8959 2.7741 40 1 2.7100 1.1377 1.9256 41 1 2.4545 -1.0833 3.8466 42 1 3.9747 -0.6037 3.0545 43 1 3.7837 1.6561 4.0579 44 1 2.2635 1.1760 4.8495 45 1 3.4688 -0.6083 6.0800 46 1 4.9887 -0.1276 5.2879 47 1 4.7977 2.1317 6.2907 48 1 3.2779 1.6518 7.0832 49 1 5.1949 3.3038 9.7589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718949926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:52:18 Heat of formation + Delta-G solvation = -11.759733 kcal Electronic energy + Delta-G solvation = -21293.296966 eV Core-core repulsion = 18447.749535 eV Total energy + Delta-G solvation = -2845.547431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75100 -36.23055 -34.58124 -33.76107 -32.37498 -31.13301 -28.38749 -27.60069 -27.05223 -24.90532 -23.20795 -22.69633 -21.25838 -20.23513 -20.00933 -18.00702 -16.75755 -16.12033 -15.91011 -15.17921 -14.76110 -14.45845 -14.41482 -14.24128 -13.75939 -13.22066 -13.09677 -12.88021 -12.66815 -12.43966 -12.22698 -12.06735 -11.88083 -11.58928 -11.45902 -11.28650 -10.99433 -10.92792 -10.68480 -10.61434 -10.57352 -10.46022 -10.37643 -10.32258 -10.09609 -9.73720 -9.57869 -9.20910 -8.95999 -8.30026 -8.21555 -5.94977 -3.97028 3.34533 3.40462 3.44224 4.18247 4.44064 4.49098 4.52150 4.71790 4.77963 4.86477 4.98535 5.10673 5.13198 5.34000 5.40302 5.41114 5.46964 5.51687 5.54508 5.60497 5.63654 5.73223 5.76461 5.82463 5.85524 5.90946 5.96521 6.00865 6.04161 6.11650 6.12275 6.19491 6.20105 6.23378 6.30605 6.40826 6.46843 6.58561 6.88633 7.02669 7.16068 7.33262 7.56192 7.74591 7.91035 8.06581 8.49566 9.10593 9.66622 11.16423 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036299 B = 0.002986 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.182407 B = 9373.499459 C = 9746.875486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.057 4.057 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.140 4.140 7 C -0.116 4.116 8 C -0.131 4.131 9 C 0.103 3.897 10 H 0.037 0.963 11 N -0.690 5.690 12 C 0.058 3.942 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.343 0.657 41 H 0.068 0.932 42 H 0.022 0.978 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 -8.193 -22.783 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.057 4.057 3 C -0.208 4.208 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.177 4.177 7 C -0.153 4.153 8 C -0.169 4.169 9 C -0.007 4.007 10 H 0.055 0.945 11 N -0.325 5.325 12 C -0.071 4.071 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.166 0.834 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.034 0.966 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.825 -8.124 -22.372 25.749 hybrid contribution 1.612 -0.371 0.477 1.722 sum -8.213 -8.495 -21.894 24.879 Atomic orbital electron populations 1.22747 0.94782 1.03530 1.01135 1.20267 0.96371 0.95178 0.93906 1.22006 1.00655 0.95931 1.02177 1.21979 1.00895 0.94811 0.96754 1.21263 0.98385 0.95484 1.00362 1.21788 0.99007 1.01432 0.95427 1.20468 1.01715 0.97964 0.95200 1.20796 1.00822 0.95100 1.00154 1.21129 0.97034 0.92418 0.90123 0.94469 1.60703 1.53323 1.08612 1.09844 1.22091 0.94817 0.98318 0.91854 1.21624 1.00908 0.97207 0.95521 1.21587 0.97779 0.99867 0.95453 1.19089 0.96777 0.93421 0.92294 1.21299 1.34503 0.97049 1.02931 0.92799 1.25037 0.96180 0.94893 0.98449 1.69971 1.46719 1.06352 1.30555 0.86612 0.80284 0.79249 0.81968 1.20723 1.21233 1.19899 0.92145 0.93574 0.89151 0.93031 0.92864 0.90810 0.92154 0.92468 0.92334 0.92606 0.92450 0.89420 0.92310 0.92591 0.89687 0.91821 0.83442 0.91326 0.95935 0.92948 0.91712 0.93507 0.93777 0.96781 0.96624 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 6.33 37.16 0.24 -1.20 16 2 C -0.06 -0.52 0.68 -155.21 -0.11 -0.63 16 3 C -0.15 -1.38 6.86 37.16 0.25 -1.13 16 4 C -0.11 -0.87 4.80 -25.75 -0.12 -1.00 16 5 C -0.12 -0.94 5.30 -27.57 -0.15 -1.08 16 6 C -0.14 -1.08 5.55 -27.34 -0.15 -1.23 16 7 C -0.12 -1.03 5.22 -29.60 -0.15 -1.18 16 8 C -0.13 -1.37 4.73 -29.60 -0.14 -1.51 16 9 C 0.10 1.12 1.89 -68.33 -0.13 0.99 16 10 H 0.04 0.44 6.87 -51.93 -0.36 0.09 16 11 N -0.69 -8.79 5.81 -107.38 -0.62 -9.42 16 12 C 0.06 0.85 5.48 -3.82 -0.02 0.83 16 13 C -0.11 -2.02 5.48 -26.73 -0.15 -2.17 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 20 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 25 H 0.05 0.36 7.77 -51.93 -0.40 -0.04 16 26 H 0.09 0.75 2.68 -51.93 -0.14 0.61 16 27 H 0.05 0.48 7.48 -51.93 -0.39 0.09 16 28 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.07 0.74 6.97 -51.93 -0.36 0.38 16 30 H 0.06 0.46 7.73 -51.93 -0.40 0.06 16 31 H 0.06 0.48 7.98 -51.93 -0.41 0.07 16 32 H 0.06 0.51 6.66 -51.93 -0.35 0.17 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.66 4.27 -51.93 -0.22 0.44 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.53 7.48 -51.92 -0.39 0.14 16 38 H 0.08 0.86 4.84 -51.93 -0.25 0.61 16 39 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 40 H 0.34 4.20 5.51 -39.30 -0.22 3.98 16 41 H 0.07 1.02 6.60 -51.93 -0.34 0.68 16 42 H 0.02 0.33 8.10 -51.93 -0.42 -0.09 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -29.99 349.70 -10.12 -40.11 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -9.17 Total: -0.90 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -1.32 Total: -25.29 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.11 Total: -36.27 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.99 -10.12 -40.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718949926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.354 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds