Wall clock time and date at job start Mon Mar 30 2020 08:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 108.76816 * 2 1 4 4 C 1.54072 * 108.87766 * 241.49305 * 2 1 3 5 5 C 1.53812 * 112.88596 * 281.09031 * 4 2 1 6 6 C 1.50476 * 112.64484 * 41.42468 * 5 4 2 7 7 C 1.54241 * 108.67845 * 266.11066 * 6 5 4 8 8 C 1.45541 * 112.41160 * 79.88907 * 7 6 5 9 9 C 1.50464 * 108.88241 * 118.51320 * 2 1 3 10 10 H 1.09002 * 109.78984 * 146.42829 * 9 2 1 11 11 N 1.46903 * 109.63079 * 266.91820 * 9 2 1 12 12 C 1.46899 * 110.99838 * 193.21178 * 11 9 2 13 13 C 1.52999 * 109.46747 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47098 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47449 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47475 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99880 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99893 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00197 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46683 * 89.99943 * 20 18 16 22 22 H 1.48495 * 109.46956 * 209.99935 * 20 18 16 23 23 H 1.48493 * 109.47052 * 330.00117 * 20 18 16 24 24 H 1.09003 * 109.46877 * 313.66049 * 1 2 3 25 25 H 1.08994 * 109.47536 * 73.66058 * 1 2 3 26 26 H 1.09003 * 109.47110 * 193.66169 * 1 2 3 27 27 H 1.09005 * 109.46645 * 172.48168 * 3 2 1 28 28 H 1.08999 * 109.47317 * 292.47922 * 3 2 1 29 29 H 1.08998 * 109.47114 * 52.48567 * 3 2 1 30 30 H 1.09005 * 108.81213 * 41.79529 * 4 2 1 31 31 H 1.08999 * 108.81750 * 160.18549 * 4 2 1 32 32 H 1.08997 * 108.67503 * 280.69370 * 5 4 2 33 33 H 1.09005 * 108.93372 * 162.33182 * 5 4 2 34 34 H 1.08996 * 109.63053 * 146.30336 * 6 5 4 35 35 H 1.09004 * 109.62926 * 25.91118 * 6 5 4 36 36 H 1.09001 * 108.89540 * 200.64073 * 7 6 5 37 37 H 1.09007 * 108.89797 * 319.22837 * 7 6 5 38 38 H 1.09003 * 108.89467 * 58.81519 * 8 7 6 39 39 H 1.08997 * 108.90199 * 177.40633 * 8 7 6 40 40 H 1.00893 * 110.99573 * 317.16642 * 11 9 2 41 41 H 1.09003 * 109.47266 * 299.99647 * 12 11 9 42 42 H 1.08994 * 109.47267 * 60.00049 * 12 11 9 43 43 H 1.09002 * 109.46994 * 299.99247 * 13 12 11 44 44 H 1.08996 * 109.47774 * 59.99688 * 13 12 11 45 45 H 1.09003 * 109.47015 * 299.99571 * 14 13 12 46 46 H 1.09000 * 109.47595 * 59.99782 * 14 13 12 47 47 H 1.09003 * 109.46744 * 299.99838 * 15 14 13 48 48 H 1.09002 * 109.47280 * 59.99158 * 15 14 13 49 49 H 0.96993 * 119.99843 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0223 1.4487 0.0000 4 6 2.0285 -0.6958 -1.2811 5 6 1.9641 -2.2300 -1.1923 6 6 0.7026 -2.7198 -0.5344 7 6 0.9778 -2.9267 0.9691 8 6 0.9385 -1.6789 1.7173 9 6 2.0169 -0.6796 1.2510 10 1 2.9449 -1.2126 1.0441 11 7 2.2470 0.3230 2.2997 12 6 3.0098 -0.2494 3.4170 13 6 3.2285 0.8220 4.4871 14 6 4.0235 0.2260 5.6506 15 6 4.2429 1.2976 6.7204 16 6 5.0253 0.7105 7.8666 17 1 5.3348 -0.3238 7.8355 18 6 5.3461 1.4935 8.9552 19 7 4.9696 2.7531 8.9930 20 14 6.3154 0.7654 10.3764 21 1 7.7683 0.9487 10.1299 22 1 5.9367 1.4525 11.6372 23 1 6.0118 -0.6835 10.4917 24 1 -0.3633 0.7095 0.7435 25 1 -0.3634 0.2891 -0.9861 26 1 -0.3633 -0.9986 0.2427 27 1 3.1039 1.4648 0.1345 28 1 1.7671 1.9192 -0.9496 29 1 1.5466 1.9940 0.8151 30 1 1.4143 -0.3690 -2.1203 31 1 3.0607 -0.3973 -1.4644 32 1 2.8210 -2.5826 -0.6183 33 1 2.0211 -2.6452 -2.1985 34 1 0.3980 -3.6647 -0.9843 35 1 -0.0884 -1.9810 -0.6635 36 1 0.2278 -3.6054 1.3752 37 1 1.9630 -3.3776 1.0889 38 1 -0.0435 -1.2227 1.5914 39 1 1.0936 -1.8959 2.7741 40 1 2.7100 1.1377 1.9256 41 1 2.4545 -1.0833 3.8466 42 1 3.9747 -0.6037 3.0545 43 1 3.7837 1.6561 4.0579 44 1 2.2635 1.1760 4.8495 45 1 3.4688 -0.6083 6.0800 46 1 4.9887 -0.1276 5.2879 47 1 4.7977 2.1317 6.2907 48 1 3.2779 1.6518 7.0832 49 1 5.1949 3.3038 9.7589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718949926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:52:17 Heat of formation + Delta-G solvation = -27.376939 kcal Electronic energy + Delta-G solvation = -21293.974179 eV Core-core repulsion = 18447.749535 eV Total energy + Delta-G solvation = -2846.224644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52997 -37.49847 -35.87848 -34.99051 -33.97478 -32.29620 -29.92206 -28.33151 -28.00273 -26.45227 -24.50326 -23.43411 -22.68450 -21.79326 -20.92680 -18.86683 -18.40606 -17.59362 -16.77124 -16.48462 -16.38832 -15.53268 -15.46842 -15.12987 -14.74679 -14.50622 -14.31000 -13.92663 -13.77040 -13.64704 -13.38532 -13.18809 -13.06553 -12.85540 -12.75511 -12.57079 -12.36224 -12.21608 -12.06748 -11.99379 -11.77031 -11.42451 -11.36913 -11.31272 -11.26090 -11.18126 -10.90920 -10.88669 -10.56151 -10.44013 -9.26626 -8.20556 -6.32239 1.38731 1.40680 1.51955 2.40351 3.11953 3.20253 3.69919 3.74764 3.99260 4.05666 4.12535 4.17766 4.25539 4.29010 4.39360 4.43667 4.53422 4.57187 4.62006 4.69591 4.79837 4.82819 4.88187 4.89712 4.94723 5.03794 5.06233 5.09310 5.16327 5.20383 5.24422 5.26358 5.30629 5.33397 5.36649 5.38845 5.45962 5.49241 5.50996 5.54379 5.58615 5.74643 5.76916 5.85933 6.21129 6.25379 6.54397 6.85133 7.37046 8.91419 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036299 B = 0.002986 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.182407 B = 9373.499459 C = 9746.875486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.056 4.056 3 C -0.149 4.149 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.136 4.136 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.104 3.896 10 H 0.029 0.971 11 N -0.693 5.693 12 C 0.070 3.930 13 C -0.104 4.104 14 C -0.097 4.097 15 C 0.024 3.976 16 C -0.546 4.546 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.263 1.263 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.346 0.654 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.048 0.952 47 H -0.011 1.011 48 H -0.011 1.011 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 -9.504 -23.848 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.056 4.056 3 C -0.207 4.207 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.173 4.173 7 C -0.152 4.152 8 C -0.166 4.166 9 C -0.006 4.006 10 H 0.047 0.953 11 N -0.328 5.328 12 C -0.059 4.059 13 C -0.142 4.142 14 C -0.135 4.135 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.187 1.187 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.169 0.831 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.008 0.992 48 H 0.008 0.992 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.906 -9.444 -23.456 27.157 hybrid contribution 1.617 0.078 0.795 1.803 sum -8.289 -9.366 -22.661 25.883 Atomic orbital electron populations 1.22721 0.94203 1.03497 1.01516 1.20260 0.96796 0.95023 0.93508 1.21983 1.00329 0.95964 1.02405 1.21959 1.00946 0.94933 0.96341 1.21266 0.98042 0.95267 1.00901 1.21770 0.99007 1.02195 0.94289 1.20445 1.01546 0.97122 0.96126 1.20799 1.00797 0.95738 0.99241 1.21187 0.96921 0.92122 0.90364 0.95290 1.60686 1.52775 1.09209 1.10100 1.21846 0.95241 0.97058 0.91728 1.21448 0.99687 0.97902 0.95125 1.21398 0.98706 0.98226 0.95152 1.19010 0.94690 0.94164 0.93450 1.21743 1.35079 0.97525 1.04033 0.92266 1.26032 0.97174 0.95245 1.01591 1.70106 1.47823 1.07866 1.31669 0.85422 0.78752 0.78801 0.77930 1.19665 1.20594 1.18708 0.93393 0.92276 0.88678 0.93354 0.91659 0.91882 0.90954 0.92720 0.93431 0.91416 0.91334 0.88906 0.91634 0.93360 0.89276 0.93700 0.83099 0.91371 0.95755 0.93022 0.92585 0.93217 0.93316 0.99233 0.99244 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 6.33 71.98 0.46 -2.09 16 2 C -0.06 -0.94 0.68 -52.64 -0.04 -0.97 16 3 C -0.15 -2.58 6.86 71.98 0.49 -2.09 16 4 C -0.10 -1.49 4.80 31.23 0.15 -1.34 16 5 C -0.12 -1.63 5.30 30.05 0.16 -1.47 16 6 C -0.14 -1.80 5.55 30.20 0.17 -1.63 16 7 C -0.11 -1.88 5.22 28.74 0.15 -1.73 16 8 C -0.13 -2.56 4.73 28.74 0.14 -2.42 16 9 C 0.10 2.17 1.89 44.52 0.08 2.25 16 10 H 0.03 0.67 6.87 -2.39 -0.02 0.65 16 11 N -0.69 -17.37 5.81 -493.63 -2.87 -20.24 16 12 C 0.07 2.05 5.48 86.30 0.47 2.53 16 13 C -0.10 -3.69 5.48 30.59 0.17 -3.52 16 14 C -0.10 -4.16 5.15 30.60 0.16 -4.00 16 15 C 0.02 1.32 4.97 29.85 0.15 1.47 16 16 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 17 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 18 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 19 N -0.93 -58.45 13.29 21.45 0.28 -58.16 16 20 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 24 H 0.05 0.87 7.95 -2.39 -0.02 0.85 16 25 H 0.06 0.77 7.77 -2.39 -0.02 0.75 16 26 H 0.10 1.39 2.68 -2.39 -0.01 1.38 16 27 H 0.05 0.86 7.48 -2.38 -0.02 0.84 16 28 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 29 H 0.06 1.22 6.97 -2.39 -0.02 1.21 16 30 H 0.07 0.89 7.73 -2.38 -0.02 0.87 16 31 H 0.05 0.82 7.98 -2.39 -0.02 0.80 16 32 H 0.05 0.77 6.66 -2.39 -0.02 0.75 16 33 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 1.15 4.27 -2.38 -0.01 1.14 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 0.87 7.48 -2.38 -0.02 0.85 16 38 H 0.09 1.70 4.84 -2.39 -0.01 1.69 16 39 H 0.04 1.06 6.43 -2.39 -0.02 1.04 16 40 H 0.35 8.34 5.51 -89.70 -0.49 7.85 16 41 H 0.07 2.01 6.60 -2.39 -0.02 1.99 16 42 H 0.02 0.70 8.10 -2.39 -0.02 0.68 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 47 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 48 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -64.31 349.70 3.25 -61.06 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.40 Total: 16.82 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 3.40 Total: -46.76 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.58 Total: -78.40 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.31 3.25 -61.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718949926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.686 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds