Wall clock time and date at job start Mon Mar 30 2020 08:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.78741 * 2 1 4 4 C 1.54236 * 109.63295 * 239.50866 * 2 1 3 5 5 C 1.45541 * 112.41071 * 160.29092 * 4 2 1 6 6 C 1.54242 * 112.39868 * 61.94400 * 5 4 2 7 7 C 1.50474 * 108.52514 * 280.01811 * 6 5 4 8 8 C 1.54005 * 112.54837 * 94.07298 * 7 6 5 9 9 C 1.50477 * 109.62967 * 120.48500 * 2 1 3 10 10 H 1.09001 * 108.87249 * 93.18519 * 9 2 1 11 11 N 1.46906 * 108.87649 * 334.64285 * 9 2 1 12 12 C 1.46901 * 110.99789 * 153.55628 * 11 9 2 13 13 C 1.52999 * 109.46731 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46937 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47152 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47384 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00230 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00285 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99925 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00135 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46959 * 89.99944 * 20 18 16 22 22 H 1.48497 * 109.47253 * 210.00085 * 20 18 16 23 23 H 1.48510 * 109.46829 * 330.00179 * 20 18 16 24 24 H 1.08998 * 109.47303 * 299.51643 * 1 2 3 25 25 H 1.09007 * 109.47052 * 59.50840 * 1 2 3 26 26 H 1.09000 * 109.47628 * 179.51284 * 1 2 3 27 27 H 1.09001 * 109.47432 * 218.85909 * 3 2 1 28 28 H 1.08997 * 109.47338 * 338.85947 * 3 2 1 29 29 H 1.08998 * 109.47338 * 98.86231 * 3 2 1 30 30 H 1.08996 * 108.89176 * 281.04867 * 4 2 1 31 31 H 1.09003 * 108.89141 * 39.53759 * 4 2 1 32 32 H 1.09001 * 108.89517 * 182.68675 * 5 4 2 33 33 H 1.08998 * 108.89821 * 301.18820 * 5 4 2 34 34 H 1.08994 * 109.63312 * 39.73138 * 6 5 4 35 35 H 1.09003 * 109.62757 * 160.11991 * 6 5 4 36 36 H 1.09004 * 108.87543 * 214.92514 * 7 6 5 37 37 H 1.08998 * 108.87985 * 333.46993 * 7 6 5 38 38 H 1.09003 * 108.87364 * 197.51500 * 8 7 6 39 39 H 1.09000 * 108.71920 * 79.26053 * 8 7 6 40 40 H 1.00900 * 110.99880 * 277.51304 * 11 9 2 41 41 H 1.08996 * 109.47180 * 60.00172 * 12 11 9 42 42 H 1.08996 * 109.47044 * 299.99756 * 12 11 9 43 43 H 1.09005 * 109.47233 * 60.00167 * 13 12 11 44 44 H 1.08994 * 109.47514 * 300.00113 * 13 12 11 45 45 H 1.09006 * 109.46913 * 299.99932 * 14 13 12 46 46 H 1.08996 * 109.47139 * 60.00100 * 14 13 12 47 47 H 1.09004 * 109.47273 * 300.00063 * 15 14 13 48 48 H 1.09005 * 109.47342 * 59.99893 * 15 14 13 49 49 H 0.97005 * 120.00044 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0479 1.4397 0.0000 4 6 2.0482 -0.7371 -1.2518 5 6 3.4276 -0.3953 -1.5656 6 6 4.4028 -0.7942 -0.4391 7 6 4.3394 0.2518 0.6407 8 6 3.3460 -0.1136 1.7593 9 6 2.0355 -0.7190 1.2214 10 1 2.2079 -1.7652 0.9685 11 7 1.0120 -0.6472 2.2728 12 6 1.1274 -1.7823 3.1982 13 6 0.0479 -1.6726 4.2768 14 6 0.1685 -2.8544 5.2410 15 6 -0.9114 -2.7451 6.3193 16 6 -0.7931 -3.9095 7.2686 17 1 -0.0248 -4.6534 7.1177 18 6 -1.6657 -4.0252 8.3299 19 7 -2.6015 -3.1197 8.5134 20 14 -1.5194 -5.4689 9.5062 21 1 -0.6044 -5.1098 10.6193 22 1 -2.8597 -5.7988 10.0541 23 1 -0.9779 -6.6459 8.7804 24 1 -0.3634 0.5063 0.8943 25 1 -0.3633 0.5215 -0.8856 26 1 -0.3634 -1.0276 -0.0087 27 1 2.9239 1.5107 -0.6448 28 1 1.2690 2.1060 -0.3706 29 1 2.3199 1.7280 1.0154 30 1 1.9806 -1.8116 -1.0819 31 1 1.4176 -0.4756 -2.1016 32 1 3.7186 -0.9083 -2.4823 33 1 3.4967 0.6803 -1.7280 34 1 4.1129 -1.7616 -0.0292 35 1 5.4162 -0.8536 -0.8362 36 1 5.3321 0.3711 1.0749 37 1 4.0331 1.1990 0.1967 38 1 3.1102 0.7852 2.3290 39 1 3.8192 -0.8352 2.4254 40 1 1.0637 0.2302 2.7684 41 1 2.1114 -1.7704 3.6669 42 1 0.9983 -2.7142 2.6479 43 1 -0.9363 -1.6842 3.8085 44 1 0.1774 -0.7406 4.8271 45 1 0.0392 -3.7866 4.6910 46 1 1.1526 -2.8423 5.7093 47 1 -0.7826 -1.8129 6.8693 48 1 -1.8955 -2.7574 5.8507 49 1 -3.2157 -3.2012 9.2598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718949927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:52:21 Heat of formation + Delta-G solvation = -19.252333 kcal Electronic energy + Delta-G solvation = -21278.435012 eV Core-core repulsion = 18432.562678 eV Total energy + Delta-G solvation = -2845.872334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71595 -36.37647 -34.33862 -33.63594 -32.46582 -31.07724 -28.45323 -27.36110 -26.89725 -24.70642 -23.54771 -22.82256 -21.39374 -20.11872 -19.88773 -18.23211 -16.26100 -16.04846 -15.94208 -15.41524 -15.00298 -14.57189 -14.40587 -13.91506 -13.71677 -13.33717 -13.01097 -12.78264 -12.55278 -12.37541 -12.15761 -11.89391 -11.69041 -11.57812 -11.47794 -11.33624 -11.15638 -10.95517 -10.68679 -10.59455 -10.53414 -10.44452 -10.39444 -10.24712 -10.23196 -9.90740 -9.59104 -9.21211 -8.96218 -8.30472 -8.19657 -5.95400 -3.97493 3.34194 3.40164 3.43855 4.23135 4.37147 4.45131 4.49951 4.73325 4.89321 4.91553 4.96206 5.09797 5.13091 5.28449 5.39889 5.42375 5.48283 5.55241 5.56044 5.63635 5.70448 5.75770 5.84260 5.85902 5.91934 5.95944 5.97169 5.99051 6.03546 6.05747 6.14672 6.20694 6.22824 6.31114 6.35764 6.50187 6.57413 6.61449 6.87804 7.01781 7.14178 7.30885 7.51416 7.74015 7.90418 8.06046 8.49024 9.10105 9.66197 11.15973 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037742 B = 0.002938 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.694262 B = 9527.938435 C = 9806.423489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.165 4.165 4 C -0.110 4.110 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.136 4.136 8 C -0.142 4.142 9 C 0.097 3.903 10 H 0.072 0.928 11 N -0.681 5.681 12 C 0.059 3.941 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.337 0.663 41 H 0.024 0.976 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.704 8.926 -20.871 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.221 4.221 4 C -0.147 4.147 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.173 4.173 8 C -0.182 4.182 9 C -0.013 4.013 10 H 0.090 0.910 11 N -0.310 5.310 12 C -0.070 4.070 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.155 0.845 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.034 0.966 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.049 8.652 -21.126 25.814 hybrid contribution 0.874 -0.628 1.368 1.741 sum 12.923 8.023 -19.758 24.935 Atomic orbital electron populations 1.21623 0.93190 1.01848 1.00641 1.20241 0.96470 0.94668 0.93526 1.22685 1.01179 0.95820 1.02413 1.20554 0.96089 1.00335 0.97770 1.20609 0.95506 1.01726 0.98231 1.21315 0.98792 0.99390 0.95903 1.21754 0.98537 1.00680 0.96367 1.22645 0.96663 1.00666 0.98187 1.21461 0.88378 0.99512 0.91958 0.90965 1.60947 1.48992 1.05779 1.15321 1.22096 0.97691 0.93739 0.93490 1.21624 0.98349 0.99672 0.95613 1.21584 1.00474 0.95709 0.96919 1.19086 0.93249 0.96834 0.92400 1.21299 1.15033 1.08992 1.10482 0.92809 1.25036 0.95395 0.96271 0.97850 1.69970 1.18408 1.34743 1.30462 0.86616 0.77279 0.82979 0.81250 1.20722 1.21226 1.19897 0.91302 0.94584 0.92880 0.90645 0.93418 0.92174 0.92274 0.92231 0.92621 0.91397 0.91857 0.92289 0.93007 0.89825 0.92029 0.92600 0.84528 0.95784 0.91536 0.91728 0.92902 0.93531 0.93791 0.96790 0.96629 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 7.38 37.15 0.27 -0.94 16 2 C -0.05 -0.45 0.73 -155.12 -0.11 -0.56 16 3 C -0.16 -1.37 7.33 37.16 0.27 -1.10 16 4 C -0.11 -0.93 4.45 -29.60 -0.13 -1.06 16 5 C -0.12 -0.92 5.18 -29.60 -0.15 -1.07 16 6 C -0.12 -0.91 5.61 -27.34 -0.15 -1.07 16 7 C -0.14 -1.10 5.24 -27.47 -0.14 -1.24 16 8 C -0.14 -1.36 4.38 -25.65 -0.11 -1.47 16 9 C 0.10 1.01 1.66 -68.42 -0.11 0.90 16 10 H 0.07 0.83 6.24 -51.93 -0.32 0.51 16 11 N -0.68 -8.27 4.15 -107.47 -0.45 -8.72 16 12 C 0.06 0.84 5.46 -3.82 -0.02 0.82 16 13 C -0.11 -1.99 5.47 -26.73 -0.15 -2.14 16 14 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 16 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 17 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 20 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.07 0.79 7.17 -51.93 -0.37 0.42 16 25 H 0.04 0.34 8.13 -51.92 -0.42 -0.08 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.56 3.03 -51.93 -0.16 0.40 16 28 H 0.05 0.40 7.73 -51.93 -0.40 0.00 16 29 H 0.06 0.52 5.53 -51.93 -0.29 0.23 16 30 H 0.06 0.54 7.47 -51.93 -0.39 0.16 16 31 H 0.06 0.49 7.97 -51.93 -0.41 0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.47 5.52 -51.93 -0.29 0.19 16 34 H 0.06 0.56 6.98 -51.93 -0.36 0.19 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.63 4.08 -51.93 -0.21 0.42 16 38 H 0.06 0.59 6.50 -51.93 -0.34 0.25 16 39 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 40 H 0.34 3.96 8.21 -39.29 -0.32 3.64 16 41 H 0.02 0.34 7.68 -51.93 -0.40 -0.06 16 42 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -29.68 351.48 -9.94 -39.62 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -9.28 Total: -1.53 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -1.23 Total: -24.90 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.29 Total: -35.55 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.68 -9.94 -39.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718949927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.367 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds