Wall clock time and date at job start Mon Mar 30 2020 08:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.78741 * 2 1 4 4 C 1.54236 * 109.63295 * 239.50866 * 2 1 3 5 5 C 1.45541 * 112.41071 * 160.29092 * 4 2 1 6 6 C 1.54242 * 112.39868 * 61.94400 * 5 4 2 7 7 C 1.50474 * 108.52514 * 280.01811 * 6 5 4 8 8 C 1.54005 * 112.54837 * 94.07298 * 7 6 5 9 9 C 1.50477 * 109.62967 * 120.48500 * 2 1 3 10 10 H 1.09001 * 108.87249 * 93.18519 * 9 2 1 11 11 N 1.46906 * 108.87649 * 334.64285 * 9 2 1 12 12 C 1.46901 * 110.99789 * 153.55628 * 11 9 2 13 13 C 1.52999 * 109.46731 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46937 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47152 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47384 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00230 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00285 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99925 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00135 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46959 * 89.99944 * 20 18 16 22 22 H 1.48497 * 109.47253 * 210.00085 * 20 18 16 23 23 H 1.48510 * 109.46829 * 330.00179 * 20 18 16 24 24 H 1.08998 * 109.47303 * 299.51643 * 1 2 3 25 25 H 1.09007 * 109.47052 * 59.50840 * 1 2 3 26 26 H 1.09000 * 109.47628 * 179.51284 * 1 2 3 27 27 H 1.09001 * 109.47432 * 218.85909 * 3 2 1 28 28 H 1.08997 * 109.47338 * 338.85947 * 3 2 1 29 29 H 1.08998 * 109.47338 * 98.86231 * 3 2 1 30 30 H 1.08996 * 108.89176 * 281.04867 * 4 2 1 31 31 H 1.09003 * 108.89141 * 39.53759 * 4 2 1 32 32 H 1.09001 * 108.89517 * 182.68675 * 5 4 2 33 33 H 1.08998 * 108.89821 * 301.18820 * 5 4 2 34 34 H 1.08994 * 109.63312 * 39.73138 * 6 5 4 35 35 H 1.09003 * 109.62757 * 160.11991 * 6 5 4 36 36 H 1.09004 * 108.87543 * 214.92514 * 7 6 5 37 37 H 1.08998 * 108.87985 * 333.46993 * 7 6 5 38 38 H 1.09003 * 108.87364 * 197.51500 * 8 7 6 39 39 H 1.09000 * 108.71920 * 79.26053 * 8 7 6 40 40 H 1.00900 * 110.99880 * 277.51304 * 11 9 2 41 41 H 1.08996 * 109.47180 * 60.00172 * 12 11 9 42 42 H 1.08996 * 109.47044 * 299.99756 * 12 11 9 43 43 H 1.09005 * 109.47233 * 60.00167 * 13 12 11 44 44 H 1.08994 * 109.47514 * 300.00113 * 13 12 11 45 45 H 1.09006 * 109.46913 * 299.99932 * 14 13 12 46 46 H 1.08996 * 109.47139 * 60.00100 * 14 13 12 47 47 H 1.09004 * 109.47273 * 300.00063 * 15 14 13 48 48 H 1.09005 * 109.47342 * 59.99893 * 15 14 13 49 49 H 0.97005 * 120.00044 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0479 1.4397 0.0000 4 6 2.0482 -0.7371 -1.2518 5 6 3.4276 -0.3953 -1.5656 6 6 4.4028 -0.7942 -0.4391 7 6 4.3394 0.2518 0.6407 8 6 3.3460 -0.1136 1.7593 9 6 2.0355 -0.7190 1.2214 10 1 2.2079 -1.7652 0.9685 11 7 1.0120 -0.6472 2.2728 12 6 1.1274 -1.7823 3.1982 13 6 0.0479 -1.6726 4.2768 14 6 0.1685 -2.8544 5.2410 15 6 -0.9114 -2.7451 6.3193 16 6 -0.7931 -3.9095 7.2686 17 1 -0.0248 -4.6534 7.1177 18 6 -1.6657 -4.0252 8.3299 19 7 -2.6015 -3.1197 8.5134 20 14 -1.5194 -5.4689 9.5062 21 1 -0.6044 -5.1098 10.6193 22 1 -2.8597 -5.7988 10.0541 23 1 -0.9779 -6.6459 8.7804 24 1 -0.3634 0.5063 0.8943 25 1 -0.3633 0.5215 -0.8856 26 1 -0.3634 -1.0276 -0.0087 27 1 2.9239 1.5107 -0.6448 28 1 1.2690 2.1060 -0.3706 29 1 2.3199 1.7280 1.0154 30 1 1.9806 -1.8116 -1.0819 31 1 1.4176 -0.4756 -2.1016 32 1 3.7186 -0.9083 -2.4823 33 1 3.4967 0.6803 -1.7280 34 1 4.1129 -1.7616 -0.0292 35 1 5.4162 -0.8536 -0.8362 36 1 5.3321 0.3711 1.0749 37 1 4.0331 1.1990 0.1967 38 1 3.1102 0.7852 2.3290 39 1 3.8192 -0.8352 2.4254 40 1 1.0637 0.2302 2.7684 41 1 2.1114 -1.7704 3.6669 42 1 0.9983 -2.7142 2.6479 43 1 -0.9363 -1.6842 3.8085 44 1 0.1774 -0.7406 4.8271 45 1 0.0392 -3.7866 4.6910 46 1 1.1526 -2.8423 5.7093 47 1 -0.7826 -1.8129 6.8693 48 1 -1.8955 -2.7574 5.8507 49 1 -3.2157 -3.2012 9.2598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718949927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:52:21 Heat of formation + Delta-G solvation = -34.143213 kcal Electronic energy + Delta-G solvation = -21279.080729 eV Core-core repulsion = 18432.562678 eV Total energy + Delta-G solvation = -2846.518051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47169 -37.59069 -35.89613 -34.58021 -34.06981 -32.27448 -29.91249 -28.14424 -27.95443 -26.22653 -24.63041 -23.64374 -22.84776 -21.79604 -20.66802 -19.07822 -18.41092 -16.89123 -16.80076 -16.55777 -16.47671 -15.88730 -15.52383 -14.94230 -14.65109 -14.55690 -14.24066 -13.87788 -13.69645 -13.61880 -13.33850 -13.11198 -12.95948 -12.85089 -12.62848 -12.39894 -12.38782 -12.26241 -12.12034 -12.04903 -11.81589 -11.41453 -11.37744 -11.30244 -11.24902 -11.19270 -10.97243 -10.82654 -10.56520 -10.56065 -9.19545 -8.20771 -6.32462 1.38509 1.40439 1.51678 2.40106 3.11761 3.23844 3.65501 3.74578 4.05793 4.09191 4.15207 4.20288 4.26467 4.27587 4.38501 4.44422 4.52526 4.58936 4.62565 4.76455 4.80184 4.84146 4.91314 4.94815 4.99290 5.04499 5.10089 5.15630 5.21365 5.25693 5.27651 5.28752 5.30946 5.34831 5.35904 5.37845 5.48780 5.52019 5.54190 5.58120 5.74093 5.77088 5.82131 5.85925 6.20763 6.25210 6.53094 6.84992 7.36860 8.91168 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037742 B = 0.002938 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.694262 B = 9527.938435 C = 9806.423489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 C -0.162 4.162 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.133 4.133 8 C -0.139 4.139 9 C 0.101 3.899 10 H 0.061 0.939 11 N -0.683 5.683 12 C 0.073 3.927 13 C -0.103 4.103 14 C -0.097 4.097 15 C 0.024 3.976 16 C -0.546 4.546 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.263 1.263 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.340 0.660 41 H 0.028 0.972 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.048 0.952 47 H -0.011 1.011 48 H -0.011 1.011 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.212 8.842 -21.740 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.047 4.047 3 C -0.218 4.218 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.170 4.170 8 C -0.178 4.178 9 C -0.009 4.009 10 H 0.079 0.921 11 N -0.313 5.313 12 C -0.057 4.057 13 C -0.141 4.141 14 C -0.135 4.135 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.187 1.187 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.159 0.841 41 H 0.046 0.954 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.008 0.992 48 H 0.007 0.993 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.572 8.573 -22.012 27.244 hybrid contribution 0.362 -0.577 1.626 1.763 sum 13.934 7.997 -20.386 25.956 Atomic orbital electron populations 1.21583 0.94168 1.00729 1.00554 1.20219 0.95601 0.95517 0.93377 1.22664 1.01726 0.94770 1.02642 1.20527 0.97018 0.99537 0.97357 1.20591 0.94491 1.02422 0.98367 1.21318 0.99517 0.98615 0.95946 1.21746 0.98209 1.01128 0.95940 1.22594 0.96345 1.00258 0.98600 1.21475 0.88455 0.99224 0.91739 0.92113 1.60910 1.50103 1.05202 1.15074 1.21831 0.96425 0.94554 0.92846 1.21443 0.99083 0.97918 0.95675 1.21397 0.98535 0.97484 0.96082 1.19008 0.93757 0.95155 0.93383 1.21746 1.15435 1.09829 1.11384 0.92282 1.26029 0.94804 0.99394 0.99811 1.70105 1.19224 1.36812 1.31321 0.85428 0.77612 0.79184 0.78707 1.19647 1.20601 1.18719 0.92469 0.93555 0.94487 0.89327 0.93264 0.92367 0.93332 0.91706 0.91754 0.90397 0.93122 0.91234 0.92610 0.88864 0.91869 0.93771 0.84124 0.95408 0.91793 0.92714 0.92926 0.93320 0.93291 0.99232 0.99303 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 7.38 71.98 0.53 -1.77 16 2 C -0.05 -0.81 0.73 -52.58 -0.04 -0.85 16 3 C -0.16 -2.36 7.33 71.98 0.53 -1.84 16 4 C -0.11 -1.64 4.45 28.73 0.13 -1.52 16 5 C -0.12 -1.52 5.18 28.74 0.15 -1.38 16 6 C -0.12 -1.60 5.61 30.20 0.17 -1.43 16 7 C -0.13 -1.88 5.24 30.12 0.16 -1.72 16 8 C -0.14 -2.48 4.38 31.29 0.14 -2.34 16 9 C 0.10 2.02 1.66 44.46 0.07 2.09 16 10 H 0.06 1.37 6.24 -2.39 -0.01 1.36 16 11 N -0.68 -16.29 4.15 -493.94 -2.05 -18.34 16 12 C 0.07 2.04 5.46 86.30 0.47 2.52 16 13 C -0.10 -3.61 5.47 30.59 0.17 -3.44 16 14 C -0.10 -4.13 5.15 30.59 0.16 -3.98 16 15 C 0.02 1.33 4.97 29.84 0.15 1.47 16 16 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 19 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 20 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 24 H 0.06 1.29 7.17 -2.39 -0.02 1.27 16 25 H 0.05 0.83 8.13 -2.38 -0.02 0.81 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 1.06 3.03 -2.39 -0.01 1.05 16 28 H 0.05 0.72 7.73 -2.39 -0.02 0.70 16 29 H 0.06 0.88 5.53 -2.39 -0.01 0.87 16 30 H 0.05 0.85 7.47 -2.39 -0.02 0.84 16 31 H 0.06 0.94 7.97 -2.39 -0.02 0.92 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.84 5.52 -2.39 -0.01 0.83 16 34 H 0.05 0.83 6.98 -2.39 -0.02 0.81 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 1.15 4.08 -2.39 -0.01 1.14 16 38 H 0.06 1.11 6.50 -2.39 -0.02 1.10 16 39 H 0.04 0.89 7.84 -2.39 -0.02 0.87 16 40 H 0.34 7.78 8.21 -89.69 -0.74 7.05 16 41 H 0.03 0.77 7.68 -2.39 -0.02 0.75 16 42 H 0.06 1.85 8.04 -2.39 -0.02 1.83 16 43 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 47 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 48 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 49 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -63.88 351.48 3.89 -59.98 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.16 Total: 15.13 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 3.48 Total: -45.88 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.77 Total: -76.48 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -63.88 3.89 -59.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718949927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.840 kcal (2) G-P(sol) polarization free energy of solvation -63.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds