Wall clock time and date at job start Mon Mar 30 2020 06:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.47291 * 2 1 4 4 C 1.42894 * 114.00168 * 180.02562 * 3 2 1 5 5 C 1.53887 * 113.58729 * 149.99568 * 4 3 2 6 6 C 1.53261 * 86.88375 * 89.61020 * 5 4 3 7 7 C 1.52587 * 128.60936 * 245.03799 * 6 5 4 8 8 C 1.52459 * 128.58644 * 165.11231 * 6 5 4 9 9 H 1.09005 * 117.50784 * 225.08203 * 8 6 5 10 10 N 1.46895 * 117.51329 * 10.15084 * 8 6 5 11 11 C 1.46910 * 110.99703 * 204.84787 * 10 8 6 12 12 C 1.53003 * 109.46824 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.46838 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47119 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.53258 * 87.69140 * 25.07872 * 6 5 4 24 24 H 1.09004 * 109.47207 * 59.99959 * 1 2 3 25 25 H 1.08994 * 109.47065 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47338 * 300.00582 * 1 2 3 27 27 H 1.08998 * 109.47461 * 240.00085 * 2 1 3 28 28 H 1.09000 * 109.46895 * 119.99662 * 2 1 3 29 29 H 1.09003 * 112.88371 * 18.82737 * 4 3 2 30 30 H 1.08994 * 113.65043 * 335.10879 * 5 4 3 31 31 H 1.09003 * 113.64683 * 204.10292 * 5 4 3 32 32 H 1.09005 * 117.50749 * 134.97766 * 7 6 5 33 33 H 1.08998 * 117.57464 * 349.82355 * 7 6 5 34 34 H 1.00900 * 111.00184 * 80.89523 * 10 8 6 35 35 H 1.08998 * 109.47017 * 60.00119 * 11 10 8 36 36 H 1.09002 * 109.46670 * 299.99530 * 11 10 8 37 37 H 1.08998 * 109.46943 * 60.00420 * 12 11 10 38 38 H 1.08994 * 109.47116 * 300.00031 * 12 11 10 39 39 H 1.09004 * 109.46806 * 60.00265 * 13 12 11 40 40 H 1.09000 * 109.47828 * 300.00570 * 13 12 11 41 41 H 1.09004 * 109.47066 * 60.00422 * 14 13 12 42 42 H 1.08994 * 109.47405 * 300.00252 * 14 13 12 43 43 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 44 44 H 1.09000 * 113.64156 * 89.41941 * 23 6 5 45 45 H 1.09000 * 113.64641 * 220.41815 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9480 2.7264 -0.7059 6 6 3.8503 3.4233 0.6556 7 6 2.9403 4.5750 1.0726 8 6 4.4614 4.7507 1.0903 9 1 4.9531 4.7842 2.0626 10 7 5.0589 5.5963 0.0483 11 6 6.0798 6.4878 0.6151 12 6 6.6784 7.3503 -0.4979 13 6 7.7411 8.2792 0.0924 14 6 8.3392 9.1421 -1.0204 15 6 9.3865 10.0567 -0.4390 16 1 9.6040 10.0253 0.6184 17 6 10.0714 10.9291 -1.2581 18 7 9.8068 10.9671 -2.5458 19 14 11.3748 12.0573 -0.5387 20 1 11.4817 11.8211 0.9235 21 1 12.6832 11.7755 -1.1821 22 1 10.9963 13.4719 -0.7856 23 6 4.0029 2.0429 1.3037 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9283 0.5461 -0.3250 30 1 3.2591 3.1240 -1.4510 31 1 4.9686 2.6340 -1.0774 32 1 2.4318 4.4923 2.0332 33 1 2.3834 5.0874 0.2883 34 1 4.3504 6.1226 -0.4407 35 1 6.8675 5.8917 1.0757 36 1 5.6233 7.1307 1.3677 37 1 5.8909 7.9464 -0.9589 38 1 7.1348 6.7071 -1.2502 39 1 8.5287 7.6833 0.5538 40 1 7.2843 8.9223 0.8446 41 1 7.5514 9.7380 -1.4813 42 1 8.7960 8.4994 -1.7728 43 1 10.2884 11.5811 -3.1219 44 1 5.0388 1.7603 1.4915 45 1 3.3580 1.8928 2.1695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721168008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:58 Heat of formation + Delta-G solvation = -20.539151 kcal Electronic energy + Delta-G solvation = -19502.266091 eV Core-core repulsion = 16520.504862 eV Total energy + Delta-G solvation = -2981.761230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.08900 -37.68290 -35.94151 -34.17362 -32.70353 -31.33107 -30.62900 -27.68844 -25.92669 -24.23994 -23.20886 -22.75971 -21.48479 -21.37968 -19.93149 -18.57363 -16.85957 -16.21353 -15.99114 -15.80486 -15.42061 -15.27725 -14.47740 -14.34528 -14.05204 -13.69129 -13.24364 -12.97457 -12.76444 -12.53904 -12.31347 -12.08682 -11.91918 -11.63489 -11.62356 -11.46565 -11.33089 -11.01617 -10.70198 -10.58560 -10.45758 -10.40803 -10.18982 -9.87585 -9.68996 -9.59870 -9.21645 -8.95926 -8.30876 -8.09050 -5.95749 -3.97760 3.28893 3.33238 3.40438 3.44851 3.70473 3.97746 4.42460 4.49126 4.52377 4.58017 4.72339 4.75644 4.89628 4.92457 5.02053 5.15550 5.31507 5.39393 5.40345 5.49656 5.54069 5.57151 5.59201 5.63880 5.68567 5.75440 5.80741 5.92886 5.94428 5.99234 6.17943 6.19855 6.31636 6.54576 6.85965 7.00118 7.03963 7.10997 7.27522 7.44197 7.74008 7.89860 8.05709 8.48597 9.10045 9.65969 11.15641 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.060467 B = 0.002203 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.947607 B =12709.304741 C =12824.937523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.065 3.935 5 C -0.088 4.088 6 C -0.140 4.140 7 C -0.169 4.169 8 C 0.040 3.960 9 H 0.106 0.894 10 N -0.657 5.657 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.109 4.109 14 C 0.020 3.980 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.119 4.119 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.341 0.659 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.014 0.986 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.092 0.908 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.150 -22.112 6.655 28.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.007 3.993 5 C -0.125 4.125 6 C -0.141 4.141 7 C -0.207 4.207 8 C -0.071 4.071 9 H 0.124 0.876 10 N -0.286 5.286 11 C -0.067 4.067 12 C -0.154 4.154 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.156 4.156 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.160 0.840 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.751 -22.321 6.292 28.608 hybrid contribution 0.310 1.102 0.798 1.396 sum -16.441 -21.219 7.090 27.763 Atomic orbital electron populations 1.21741 0.93810 1.02138 1.03174 1.22515 0.95530 0.84099 0.99921 1.87923 1.19906 1.25885 1.94570 1.22980 0.81405 0.97858 0.97078 1.22574 1.01438 0.93311 0.95198 1.22287 1.04733 0.89252 0.97840 1.23320 0.93737 1.01145 1.02543 1.22389 0.92704 0.96676 0.95287 0.87634 1.60196 1.16636 1.25918 1.25884 1.22124 0.93918 0.93758 0.96918 1.21639 0.98898 0.97424 0.97411 1.21585 0.96181 0.97034 0.99884 1.19100 0.95388 0.94006 0.93189 1.21339 1.20077 1.19902 0.94438 0.92713 1.25044 0.97306 0.97402 0.94868 1.69984 1.42013 1.37807 1.03746 0.86552 0.81650 0.80616 0.79266 1.19784 1.21037 1.21053 1.23000 1.01151 0.94001 0.97474 0.91823 0.91197 0.91897 0.93416 0.93531 0.90993 0.90874 0.88223 0.88922 0.88616 0.83955 0.91223 0.95385 0.92750 0.91654 0.93444 0.93667 0.96721 0.96593 0.93124 0.88956 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.41 6.50 37.16 0.24 0.65 16 3 O -0.36 -3.72 10.28 -35.23 -0.36 -4.08 16 4 C 0.06 0.60 4.37 -25.81 -0.11 0.49 16 5 C -0.09 -0.91 7.91 -26.13 -0.21 -1.11 16 6 C -0.14 -1.49 2.96 -154.73 -0.46 -1.95 16 7 C -0.17 -1.77 10.24 -26.88 -0.28 -2.05 16 8 C 0.04 0.46 6.31 -67.93 -0.43 0.04 16 9 H 0.11 1.19 7.90 -51.93 -0.41 0.78 16 10 N -0.66 -8.55 6.76 -106.94 -0.72 -9.27 16 11 C 0.06 0.89 5.54 -3.82 -0.02 0.87 16 12 C -0.12 -2.01 5.47 -26.73 -0.15 -2.16 16 13 C -0.11 -2.28 5.15 -26.74 -0.14 -2.42 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 16 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 19 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C -0.12 -1.09 7.93 -26.14 -0.21 -1.30 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.34 4.26 8.52 -39.29 -0.33 3.92 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -31.11 368.37 -10.46 -41.57 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.72 Total: -1.00 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -1.92 Total: -23.01 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.01 Total: -36.04 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.36 Total: -4.08 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.11 -10.46 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721168008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.031 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds